| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 458799 | 3 (0.110) | 27 (1.000) | 26/276 | 0.1 | 90.3% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
ATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGC > NC_000913/458663‑458938 | aTGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACTATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagc < 1:442470‑M1/143‑7 (MQ=255) gtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaatacaacaacccttaagttagcgcttatGGGGAAACATCCCCATATACt < 2:392289‑M1/21‑1 (MQ=255) gCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataaacgct > 1:80243‑M1/1‑134 (MQ=255) cAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCATTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 1:393853‑M1/1‑133 (MQ=255) tccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGAc < 2:345200‑M1/24‑1 (MQ=255) tccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGAc > 1:416193‑M1/120‑143 (MQ=255) ttcttcgggcttaccaatatgagccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtacatcgacgtctgttaagtgagcgattatGGCGAAACATCACCATATACTGACgtatc < 2:78562‑M1/29‑3 (MQ=255) tcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACAt > 1:345200‑M1/114‑143 (MQ=255) tcttcgggcttaccaatacgggccagaatggctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACAt > 1:414190‑M1/114‑143 (MQ=255) gAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaag < 1:238711‑M1/143‑18 (MQ=255) aGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTACTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagagctaacttaaggg > 2:184516‑M1/1‑124 (MQ=255) ggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAAt > 1:283734‑M1/108‑143 (MQ=255) cAACAGGCATCTGGTGAATAATTAACCATTCCAATACAATTAGGTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttga < 1:124864‑M1/143‑24 (MQ=255) gcttacgaatgtcgtccagaattgctgcccagttatcgtgagagtaattcatcggcccgttaaatcatttcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATa > 2:93215‑M1/107‑143 (MQ=255) aagaggtagctggtgattaATTAACCATTCCCATACAACTAGTTCACCACAGAGGGGGGATTTTATCGCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCatatgcgctaacttaagggttgaa < 2:33391‑M1/134‑25 (MQ=255) caatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGGAACATCCCCATATACTGACGTACATGTTAATAGATGGc < 1:42285‑M1/43‑1 (MQ=255) caatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGCTGGc < 2:303363‑M1/43‑1 (MQ=255) cATCTGGTGAATAATTAACCATTCCAATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatct < 1:336134‑M1/143‑31 (MQ=255) cTGGAGAATAATTAACCATTACCATACAAAAAAAAAAAAAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaa < 2:39906‑M1/143‑34 (MQ=255) gggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAg < 2:474962‑M1/49‑1 (MQ=255) ccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaaccattaagtgagcgcttatGGGGAAACATCCACATATACTGGCAAATATgtgaatagatgggatgaaacaa < 2:77054‑M1/52‑11 (MQ=255) aataatTAACCATTCCCATACAATTAGTCAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGACACATCCCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:293102‑M1/143‑40 (MQ=255) aatTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgac > 1:419611‑M1/1‑101 (MQ=255) ttAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgc < 1:175341‑M1/143‑45 (MQ=255) ttgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCACATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCgt > 1:277456‑M1/86‑143 (MQ=255) tgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATCGATGGCGTGAAGCACAGCCGTCTCa < 1:277044‑M1/62‑1 (MQ=255) aTTCCCATACCATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt < 1:89502‑M1/143‑51 (MQ=255) aTTACCATACAATTAGTTATCCAAAAAGGGGGGATTGTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt < 2:322463‑M1/143‑51 (MQ=255) ctattAGTTAACCAAAAAGGGGGGATTTTATCGCCCCTTTAATTGTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtta < 1:137275‑M1/141‑60 (MQ=255) aaTTAGTTAACCAAAAAGGGGGGCTTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctgactttagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa > 1:110065‑M1/1‑83 (MQ=255) taattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaaa > 1:392289‑M1/63‑143 (MQ=255) attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGCCGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAAtt < 1:147681‑M1/83‑1 (MQ=255) cAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctc > 2:362678‑M1/1‑72 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTaaa > 1:170034‑M1/58‑143 (MQ=255) agagtggggcttttCTCTCCCCTTGAATTTTTCCTCTCTTCTCTGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcg < 2:277222‑M1/138‑75 (MQ=255) cacgttaagtgctatcagtcgtaataccacaagacttaagttagcgcttatGGGGAAACATGCCCATATGCTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAaga > 2:64043‑M1/52‑143 (MQ=255) gggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtccctcgttaagacgatgcctcgcgttcttc > 1:80138‑M1/1‑63 (MQ=255) cgttaaatcataccaggcgtaataccaccacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagaga > 1:366266‑M1/50‑143 (MQ=255) gttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACtaagaggg < 1:82760‑M1/95‑3 (MQ=255) tttATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattg < 1:325591‑M1/143‑86 (MQ=255) tcatatcaggcgtaataccacaacccttaagttagcgcttatGAGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGctct > 1:129138‑M1/43‑143 (MQ=255) aTCTCCGCTTTAATTTGTCCTCTAGTCGCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgt < 1:418250‑M1/143‑89 (MQ=255) ccccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaaattaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgctgcctcgcgctcttcaattgcgtattg > 1:408988‑M1/1‑51 (MQ=255) taataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAg < 1:343381‑M1/113‑1 (MQ=255) aataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGTTGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGc > 1:471366‑M1/30‑143 (MQ=255) cacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCt < 2:172786‑M1/119‑1 (MQ=255) aacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGaa > 1:452366‑M1/22‑143 (MQ=255) tctcGGCGTCGAGTGTGGGGGCAACATCCCatacgcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtc < 2:163524‑M1/143‑114 (MQ=255) gttagctcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGaa > 1:474962‑M1/13‑143 (MQ=255) agcgcttatGGGGAACCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTGATCTGGTGATATGACGGGAAGGAAGCTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATc > 2:344440‑M1/10‑143 (MQ=255) tGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgagttttgtaggctgtcagggatactgtcccacgaatg > 2:28895‑M1/1‑21 (MQ=255) gAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaacaatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttattcaattgcgttttgtaggctgtgagggatactgtgcaacggctgg > 2:294020‑M1/1‑20 (MQ=255) gcttatGGGTAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATcccc > 2:399213‑M1/7‑143 (MQ=255) cttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCg > 1:400728‑M1/6‑143 (MQ=255) atGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCGTCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCGTTGAAATCCCCGTAt < 2:399260‑M1/141‑1 (MQ=255) ggggAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggttgtcagggatactgtcccacgaatggccacctg > 1:440488‑M1/1‑13 (MQ=255) gctcgccATATACTGGCGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGTCGCTgc < 2:412997/138‑1 (MQ=255) cATCCCatatgcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgttccacgaatggccacctgtaagctc < 2:302784‑M1/143‑138 (MQ=255) aTCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTgcg > 1:290026/1‑143 (MQ=255) tCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccc > 1:24761‑M1/1‑4 (MQ=255) tCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctcca > 1:469255‑M1/1‑4 (MQ=255) tCCCCCTATACTGACGTATATGTTAATAGATGGTGTGAAGGATAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTgcgc < 2:96742/143‑1 (MQ=255) | ATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTATTGCCGCTGCGC > NC_000913/458663‑458938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |