New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)23 (0.820) 23/284 0.2 100% intergenic (+9/‑768) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

TCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACG  >  NC_000913/1292898‑1293177
                                                                                                                                             |                                                                                                                                          
tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATGGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTACGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                           <  2:71588‑M2/143‑2 (MQ=255)
    aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAACCAGGAATGTAAGGAATTCAAAATTGACCTTTATTTTGTGCCGggtaa                                                                                                                                       <  1:422520‑M2/143‑6 (MQ=255)
      ttttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCTAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatg                                                                                                                                     <  2:62956‑M2/143‑8 (MQ=255)
                       aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgata                                                                                                                    <  1:436872‑M2/143‑25 (MQ=255)
                        ttGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgctaatgactccaacttattgatag                                                                                                                   <  2:269903‑M2/143‑26 (MQ=255)
                              taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGTATGTAACGAATCCAAAATTGTACTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtatt                                                                                                             <  1:157081‑M2/143‑32 (MQ=255)
                                           atttggttgtggtttgttgagGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataat                                                                                                >  2:383941‑M2/9‑99 (MQ=255)
                                               tGGGGTGGTTTGTTGAGGCAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgccc                                                                                            >  1:211014‑M2/1‑95 (MQ=255)
                                                      gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCACAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact                                                                                     <  1:395411‑M2/143‑56 (MQ=255)
                                                                   ataataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct                                                                        >  2:133335‑M2/1‑75 (MQ=255)
                                                                          agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagcccccccga                                                                 <  2:43328‑M2/143‑76 (MQ=255)
                                                                               tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                            >  1:5403‑M2/1‑63 (MQ=255)
                                                                                aagTTCTGTTGTGCCATAGCTAGCAATGTCAGGAATTCAAAATTGTTTTTTATCTTGTGCCGtgtaatgcctccatcttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                           >  2:170394‑M2/1‑62 (MQ=255)
                                                                                    tCCGTTGTGCAATTGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCTTgttaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                                       >  2:169451‑M2/1‑58 (MQ=255)
                                                                                                   ccGGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                        >  2:464566‑M2/1‑43 (MQ=255)
                                                                                                     aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcggcttccgtcc                                      <  1:87344‑M2/143‑103 (MQ=255)
                                                                                                                gAATTCAAAGTTGTTCTTTATGTTGTGCCGggtaatgactccaagttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcca                           >  2:222869‑M2/1‑30 (MQ=255)
                                                                                                                     cATAATTGTTCTTTATTTTGTGCGGggcaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgc                      >  2:439208‑M2/1‑25 (MQ=255)
                                                                                                                        tttttttcTTGATTTTTTGCGGggtaatgattccatgttattgataggtttttatgttcatataagtcccgatgactttgtcatgcaggtccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                   >  2:204823‑M2/3‑22 (MQ=255)
                                                                                                                        aaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcaaccgattttgagaacgacagcgacttacgtcccagccgtgacaggtgcgac                   <  2:161383‑M2/143‑122 (MQ=255)
                                                                                                                           tgttgtTGATGTTGGGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                >  2:165379‑M2/1‑19 (MQ=255)
                                                                                                                                    ttttGTGCCGggtattgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg       >  2:3258‑M2/1‑10 (MQ=255)
                                                                                                                                         ggcCGggtaatgactccaactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg  >  1:78980‑M2/2‑5 (MQ=255)
                                                                                                                                             |                                                                                                                                          
TCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACG  >  NC_000913/1292898‑1293177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.