Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp 100% [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 73 [0] [1] 74 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)69 (1.360) 48/388 NT 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

TTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGA  >  NC_000913/3815713‑3816164
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                 
agatcgcgcctggtatgaaacaggccggcgttgaagaaatagggggttttgcgcccggattacagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagccaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                                                                                                                   <  2:331870‑M2/1‑1 (MQ=255)
agatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                                                                                                                   <  2:262278‑M2/1‑1 (MQ=255)
      cgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacccctgcttgctaagcgcaacttcaataaactggcgctgatatagtttcatgccttcgctcctcatcttacttttctccagacaaaaaaacggcgcctcctcagtccccttacaaatcagttttccagagcgcccttctgcCGCcccc                                                                                                                                                                                                                             >  1:503312‑M2/222‑228 (MQ=255)
      cgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcctcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagccccgccttctgcCGTcccc                                                                                                                                                                                                                             >  2:534440‑M2/222‑228 (MQ=255)
      cgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcataagtcgccttaaaaatcagattgccagcgccgccttctgcCGTcccc                                                                                                                                                                                                                             >  2:288109‑M2/222‑228 (MQ=255)
        cccggttataaacaacccggcgttgaaaaaataggggcctttgcgcccggatgtcagcttaaactcgccaaactttaacaccttcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacgtttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                           <  1:616977‑M2/9‑1 (MQ=255)
        cccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCATg                                                                                                                                                                                                                           <  2:327965‑M2/9‑1 (MQ=255)
         ccggtagtaaacagcccggcgttgaagaaagaggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                           <  2:533500‑M2/9‑1 (MQ=255)
         ccgggattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaactcctgcttgctaagcgcaaattcaataaacgggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                           <  2:503312‑M2/9‑1 (MQ=255)
            gtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccaccgccgccttctgcCGTCCCCTGCAc                                                                                                                                                                                                                        >  2:440302‑M2/216‑227 (MQ=255)
                     agcccggcgttgaagaaatagggtcttttgcgcccggatttcagcgtaaactcgccaaactttaacaccttcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                                                                                                              <  2:247588‑M2/22‑1 (MQ=255)
                       cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctccttatcttacttttctaacgacaaaaaaaaggcgattcatcagtcgccttaaaaatcagtttgcaagcgcagccttctgcGGTCCCCTGCACTTCAATGATgcg                                                                                                                                                                                                            >  2:694031‑M2/205‑228 (MQ=255)
                       cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagtcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                                                                                                             >  1:20788‑M2/205‑227 (MQ=255)
                       cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttcaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                                                                                                             >  2:606634‑M2/205‑227 (MQ=255)
                       cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                                                                                                              >  1:562748‑M2/205‑210 (MQ=255)
                       cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                                                                                                             >  2:91224‑M2/205‑227 (MQ=255)
                       cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccgtcgctcctcatcttacttttctccagacaaaaaaaaggcgactcatcagtcgccttaaaattcaatttcccagcccccccttctgccttttccttatacaaaactaacc                                                                                                                                                                                                             >  1:671926‑M2/205‑205 (MQ=255)
                        ccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                                                                                                                                                             <  2:562748‑M2/7‑1 (MQ=255)
                                 aacaaatgggggcttttgcccccggatttcagcgtaaacccgccaaactttaaccccttctttctaagcccaaattcaataaactgggactgatatgggttcatgccttcgctccttatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                                                                                                                  <  1:694031‑M2/34‑1 (MQ=255)
                                   gaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                                                                                                                <  2:7044‑M2/36‑1 (MQ=255)
                                     aataggggcttttgcgcccggatttcaggggaaactcgccaaactgtaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                                                                                                              <  2:337887‑M2/38‑1 (MQ=255)
                                     aataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                                                                                                              <  2:20788‑M2/38‑1 (MQ=255)
                                      ataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagtcgactcatcagtcgccttaaaaatccgtttgccagagccgccttctgcCGTCCCCTGCACTTCAATAATGCACCCGTCTTCGGtcat                                                                                                                                                                                             >  1:531228‑M2/190‑228 (MQ=255)
                                      ataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                                                                                                                                                             >  2:599561‑M2/190‑228 (MQ=255)
                                         ggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                                                                                                                                                           >  2:527080‑M2/187‑227 (MQ=255)
                                          gggcttttgcgcccggatttcagcgtaaactcgccaaactttaactcctgcttgctaagcgcaaattcaataaactggccctgatatggtttcatgccttcgcttctcatcttacttttctacagacaaaaaaaaggcgacgcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                                                                                                                                                         <  2:167274‑M2/43‑1 (MQ=255)
                                          gggcttttgcgcccggatttcagcgtaaactcgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                                                                                                                                                         <  2:418877‑M2/43‑1 (MQ=255)
                                           ggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaacaaaggcgactcattactcgccttaaaaatcaatttgccagccccgcattccgcCTACCCTCGCCCTCCAAACATGCCcccgtctccggcctccccac                                                                                                                                                                                        >  1:258908‑M2/185‑219 (MQ=255)
                                             gtttttcccccggtttttaaagtaaactccccaaacttttactcctgcttgctaagcgcaaaatcaataaactggcgctgatatggtttcaagccttcgctcctcatcttacctttctacaaccaaaaaaaaggcggctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                                                                                                                                                      <  1:393250‑M2/46‑1 (MQ=255)
                                                        cgatttcaactgaaactccccaaactttaacccctgcttactaagccgaaagtcaataaactggcgctgatatggtttctggcctccgctcctcatcttacttttctccagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                                                                                                                                                           <  1:436542‑M2/57‑1 (MQ=255)
                                                                   taaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag                                                                                                                                                                <  1:252129‑M2/68‑1 (MQ=255)
                                                                         cgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcacgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                                                                                                          <  2:510466‑M2/74‑1 (MQ=255)
                                                                           ccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgcctcatcagtcgccttaaaaatcagtttgccagcaccgccttctgcCGTCCCCTGCACTTCAATGATTGACCCGTCTtcggccatcactccgttcaggtccgctctcgcggccgaactttac                                                                                                                                                        >  1:262157‑M2/153‑206 (MQ=255)
                                                                             aaactttacctcctgcttgctaagcgcaaattcaataacctggcgctgatatggtttcagtccttcgcccctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                                                                                                      <  1:599561‑M2/78‑1 (MQ=255)
                                                                             aaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                                                                                                      <  2:262157‑M2/78‑1 (MQ=255)
                                                                               actttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGCCGGTCTCTGCGGCAGAGCCTTCAACg                                                                                                                                                     >  2:70831‑M2/149‑227 (MQ=255)
                                                                                    aacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                                                                                                               >  1:147511‑M2/144‑180 (MQ=255)
                                                                                    aacacctgcttgctaagcccaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                                                                                                               <  2:275995‑M2/85‑1 (MQ=255)
                                                                                     acccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                                                                                                              <  2:147511‑M2/38‑1 (MQ=255)
                                                                                           gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggctactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATAATGCGCCCGTCTTCGGACATCACCACGTTCATTGCGGTCCCTTAGGCCGAGTCTTCAACGTATTCCAGAACg                                                                                                                                         >  1:671698‑M2/137‑227 (MQ=255)
                                                                                           gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaacaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                                                                                                             >  1:381703‑M2/137‑159 (MQ=255)
                                                                                            cttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcg                                                                                                                                                                                                            <  2:381703‑M2/24‑1 (MQ=255)
                                                                                                     cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagccgactcatcagtcgccttaaaaatcagtttgccagcgccaccttctgcAGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGATCATCACTACGTTCCTGTCGGTCTATGCGGCAGAGTCTTCAACGCATTCCAGATCACAAACCGCtt                                                                                                                               >  2:170975‑M2/127‑227 (MQ=255)
                                                                                                      gcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                                                                                                                                                  >  2:207451‑M2/126‑191 (MQ=255)
                                                                                                                       gcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTATTCTGTCATCACTCCGTTCATGTCGGTCTCTGCGGCCGAGTCTTCACCGTATTCCAGCTCGCAAACCCCTTCGCCGTTCACAATTCcgc                                                                                                             >  2:312805‑M2/109‑226 (MQ=255)
                                                                                                                        cgctgatatggtttcatgccttcgctcctcatcttacttttctaccgacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCCATGATACTCCCGTCTTCGGTCATCACTACGTTCATTTCGTCCTCTTCGGCAGAGTCTTCACCTTATTCCAAATCCCAAACCCCCTCGCCCGTGACAAGTCCAAc                                                                                                            >  1:674822‑M2/108‑227 (MQ=255)
                                                                                                                        cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTCCGGCAGAGCATTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACa                                                                                                           >  2:216204‑M2/108‑228 (MQ=255)
                                                                                                                                tgttttcctgccttcgcccctcatcttacttttctgcagaaaaaaaaaaggcgactcagcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGc                                                                                                   <  1:527080‑M2/129‑1 (MQ=255)
                                                                                                                                     tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccaccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGACTTCGGTCATCACTACGTTCATCTCCGCCTCTGCAGCCGAGGCTTCAACGCAATCCACATCCCAAACCGCCTAGCCTGTCACAATTCCGACAgcaactggcgacc                                                                                              >  1:264923‑M2/95‑222 (MQ=255)
                                                                                                                                       atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCGCAAACCGCTTCTCCGTTCACAATTCCGACAGAAACTTCGGCTAc                                                                                             >  2:559743‑M2/93‑227 (MQ=255)
                                                                                                                                            ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGACCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGCATTACACGTATTCCAGAGCGCAAACCGCTTCGCAATTCACAATCCCACCAGATACTGCGGCTACCAtcca                                                                                       >  2:400254‑M2/88‑227 (MQ=255)
                                                                                                                                                 cccccactttacttttcgcacgacaaaaaaaaggcgcttcctccgtccccttaaaaatcagtttgccagcgccgcctcacgcCGTCCCCGGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCa                                                                                  <  1:288109‑M2/146‑1 (MQ=255)
                                                                                                                                                    tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGc                                                                                                                            >  2:73903‑M2/80‑183 (MQ=255)
                                                                                                                                                     catcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTGCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGcc                                                                                                                           <  1:73903‑M2/105‑1 (MQ=255)
                                                                                                                                                             ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGTTACAATCCCTTTCATCGGATTGGttt                                                                     >  2:585873‑M2/71‑228 (MQ=255)
                                                                                                                                                                tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCTTCGGATTGGTTTTCa                                                                  >  2:262724‑M2/68‑228 (MQ=255)
                                                                                                                                                                       acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGTCTCTGCGGCCGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCAACAAACTGCGGCCCCCATCCCTTTCCTCGGATTTGTTTTTCGCTTGc                                                            >  1:183982‑M2/61‑227 (MQ=255)
                                                                                                                                                                                 ggggtcccaccactctccttaaaaatcagtttgccagccccgccctctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACCACGTTCATTTCGGTCTCGGCGGCAAAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCAGCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  1:606634‑M2/178‑1 (MQ=255)
                                                                                                                                                                                   cgactcatcatgccccttaaaaatcagtttgcacggcccgccttctgcCGTCACCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACATAAACTTCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  2:674822‑M2/178‑1 (MQ=255)
                                                                                                                                                                                   ccgctcagcagtcgccttaaaaagtagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  2:689226‑M2/178‑1 (MQ=255)
                                                                                                                                                                                     actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCTCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTATTCCAGATCCCAACCCGATTCCCCGTTCACAATTCCGACAGAACCTCAGCCTACAATCCCTTTAACCGCATTGGTTTTTCGCTTGCCGACttacaccacc                                              >  1:250060‑M2/47‑225 (MQ=255)
                                                                                                                                                                                     actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCAGAGTCTTCAACGCATTCCAGATCGCAAACAGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTAATCGGATTGGTTTTCAGCTTGCCGTTTTCAACCAGCt                                             >  2:62955‑M2/47‑228 (MQ=255)
                                                                                                                                                                                     actcatcagtcgccttaaaaatcagcttgccagcgccgccttctgcCGTCACCTGCACTTCAATGAAGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTCCGCCGTTCACCATTCCGACAGAAACTGAGGCTACCACCCATTTCATCGGCTTGGGTTTCAGCTTGCCGTTttcccccaac                                              >  1:164482‑M2/47‑225 (MQ=255)
                                                                                                                                                                                           ccgtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAAGGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTa                                       <  2:701458‑M2/188‑1 (MQ=255)
                                                                                                                                                                                               cgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTGCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAgc                                     <  2:183982‑M2/190‑1 (MQ=255)
                                                                                                                                                                                                 ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTTGTTTTCAGCTTACCGTTTTCCAACAGCTTCTGtagcgac                                  >  2:342176‑M2/35‑225 (MQ=255)
                                                                                                                                                                                                 acttaaaaatcaggttgcccgcggcgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTATTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCa                                  <  2:602502‑M2/193‑1 (MQ=255)
                                                                                                                                                                                                   ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTACGGCAACCATCCCTTTCACGGAGTTGGTttcacacttaccgttttccccccctctcttatccccctt                                >  1:104070‑M2/33‑210 (MQ=255)
                                                                                                                                                                                                             ttttgccagcgccgcctcctgcCCTCCCCTGCACTTCAAGGCTGCGCCCGTCTTCGGTCATCACTACCTTCATGTCGGTCTCGGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCa                     <  1:262724‑M2/206‑1 (MQ=255)
                                                                                                                                                                                                              tttgcccgcgccgcctgctgcCGTCCCCGGCCCTTCAATGATGCGCACGTCTTCGGTCATCACGACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCAc                    <  2:437682‑M2/207‑1 (MQ=255)
                                                                                                                                                                                                              tttgccagcgccgccttctgcCGTCCACTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTTTGCGGCAGAGTCTTCAACGTATTCCAGCTCCCAAACCTCTTCCCCGTTCCCAATTCCGCCAGACACTGAGGCTACCATCCCTTTCATCGGGTTGGCTTTCAGCTTCCCGTTTCTCACCACCTTCTTTACAGCATTTACCAGGCCAc                    >  1:192302‑M2/22‑227 (MQ=255)
                                                                                                                                                                                                               ttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCAACACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGcc                      <  2:192302‑M2/205‑1 (MQ=255)
                                                                                                                                                                                                                   ccctcccGCCTTCGGACGTCCCCTCCCCTTCAATGGTCCGCCCTACTACGGGCATCACTACCGTCATGTCGGTTCCTGCGGCAGAGTCTTCAACATATTCCAGATCGTAAACCGCTTCGCCGGTCACAATTCCAACGCAAACTGCGGCTCCCAGCCCTGTCATCGGATTGGTTTTCAGCGTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAgg               <  1:31100/222‑1 (MQ=255)
                                                                                                                                                                                                                                cgcCGTCCCCTGCCCTTCAAGGAGGCGCCCGTCTGCGGGCATCACTAAGTTCAAGGCGGGCTCTGGGGCAGAGTCTTCAACGGATGCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATGGGTTTGCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGa  <  1:70831‑M2/225‑1 (MQ=255)
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                 
TTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGA  >  NC_000913/3815713‑3816164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: