| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,565,350 | T→C | 15.6% | intergenic (+20/+129) | yffS → / ← eutA | CPZ‑55 prophage, uncharacterized protein/reactivating factor for ethanolamine ammonia lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,565,350 | 0 | T | C | 15.6% | 155.0 / 2.3 | 70 | intergenic (+20/+129) | yffS/eutA | CPZ‑55 prophage, uncharacterized protein/reactivating factor for ethanolamine ammonia lyase |
| Reads supporting (aligned to +/- strand): ref base T (32/24); new base C (3/9); total (35/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.85e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCG > NC_000913/2565125‑2565568 | tGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGACACCAGATCGGCAAAGTCAAGAAAGGGGACAAGC‑TGATACCTTTGCTTCCCAACTGGATTGTTAAGCTGGAGGACAAATAAACCAGCCTTCAACCCCCtctc > 2:669577/1‑227 (MQ=255) gCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGAAAAGGCAAGAAAAGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGCAGAAAAAACAAGCCTTCAACCCCAACCCAccaaacaaaga > 1:28575/1‑224 (MQ=255) ggAAGCCAAACAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGccc < 2:76965/228‑1 (MQ=255) gacggTTTTATCGAATGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCt < 2:281447/224‑1 (MQ=255) cgcgTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGGACAGGAAATCGAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGGGACAACC‑TGATAACTTTGCTTCCCAACTGAATTGATGAGAATGGCGACGGAAAAACCAGCCTCTACCCCCCTCCACACAAACAACCACCGGCCCCCTCACCGGGGTTTTGcca > 1:182705/1‑226 (MQ=255) cgcgTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGGAAACGGCAACCAGATCGGCAAAGGAAAGAAAGGAGACAAGC‑TGATAACTTTGCTTCCCAACTGAATTGATAAGCTGGAAAACGACAAAACCACGCTTACAACCCAACCCATAAACAAAAACCAGGCCCCACACCCCGGTTTTTGcaa > 1:269055/1‑226 (MQ=255) cgcgTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGAAAAGA‑TGATAACTTTGCTTCCCAACTGAATTGATAAGCTGGGCGACGAATAAACCAGCCTTTAACCCCATATCCTCAATCAACTCCCGTCCCCGCTGCCGGGGTTTTGcct > 1:47028/1‑226 (MQ=255) cgTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGGGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAAGCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTAt > 2:230638/1‑227 (MQ=255) ttATCGACTGATTGAACAGGGCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGcac < 2:203067/227‑1 (MQ=255) aTCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCAGGCCCCGCCGCCGGGCCTTCGCTATGcacaa > 2:450456/1‑225 (MQ=255) tGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGCTTGATAAGCTGGGAGACCAATAAACCAGCCTTCTACCCCATCTCCTCAATCACAGCCCGACCCCGCTGCCAGGTTCTTGCAATGCACCACCATAAc > 2:321740/1‑228 (MQ=255) tggacAGGCCAAAGGGAAGGGATTGATTAGCGGTGAACAAGAAATAAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCa < 1:669724/224‑1 (MQ=255) tGAGCAGGCAAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCa < 2:28575/228‑1 (MQ=255) gCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGGAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAACCCAGCCTTCAACCCCCTCTCATCAATCAAAGCCCGGCCCCGCTTCCGGGTTTTTGCAATGCACCCCAATTACCCCACCCgggt > 1:396588/1‑226 (MQ=255) ccAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACACCAATTACCCCAACCGGATa > 2:218879/1‑228 (MQ=255) ccAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCCCTCCCGGGTTTTTCCTATGCACCAAAATAACCCCCACCGGaaa > 1:140370/1‑226 (MQ=255) aaggtgaggGGATTGAATAGGCTTGAAAAGGAAAGCAAAACAAAGAAAGACCAAAACGGCAACCAGATCGACAAAGGCAATAAAGGTTACATGT‑TGATAACTGTGCTTCCCAACTGGATTGATAAGCTGGGAGGCGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATaca < 1:618443/223‑1 (MQ=255) gagGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCCCAATTACCCCAACCGGATACACAGCCgg > 2:253438/1‑228 (MQ=255) tgattAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCCCAATTACCCCAACCGGATACACCCCCGGCTACa > 2:188024/1‑227 (MQ=255) tattAGAGGTTAACAGGAAATCAAAAACAAGAAACACGAAAAGGGCAAACAGATCGGCAAAGGAAAGAAGGGGGACAAGC‑TTACAACATTGCTTCCCAACTGGATTGATAAGCTGGGCGACGAATAAACCAGCCTTCATCCCCATCTCAACAATCAACGCCCCGCCCCGCCGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAAt < 1:321740/227‑1 (MQ=255) gattAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACACTTACCCCAACCGGACACACAACCGGATACaa > 2:676601/1‑227 (MQ=255) attAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGATGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATAAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATAACCCCAACCCGCAACACAGCCGGATACAAt > 1:297549/1‑227 (MQ=255) cGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGCCGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCCCAATTACCCCACCCGGATACACAGCCGGATACAATTcccc > 2:345454/1‑225 (MQ=255) cGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCCACCGGATACACAGCCGGATACAATTccacc > 2:148447/1‑228 (MQ=255) cGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAAt < 2:165634/222‑1 (MQ=255) cGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAAt > 1:165634/1‑222 (MQ=255) cGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTccacc > 2:553859/1‑228 (MQ=255) cGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTccac > 2:637204/1‑227 (MQ=255) cGTTGAACAAGAAGAAAAACAAAAGAAAAACGAAAAAGGCAACCAGGTCGGAAAAGGAAAGAAAGGTGAAAAGC‑TGATAACTTTGCTGCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTccac < 1:12854/227‑1 (MQ=255) cGTTGAAAAAGAAATCAAACAAAAGAAAGGCGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTGCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTccac < 1:72033/227‑1 (MQ=255) taaaCAGGAAATCAAACAAAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAg < 2:105038/225‑1 (MQ=255) tGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAg < 2:30033/227‑1 (MQ=255) aaCAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCCCCAGcac > 2:619757/1‑228 (MQ=255) gAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGGTTTTGCTATGCACCCCAATTACCCCAACCGGATACACAACCGGATACAAATCCACCAGcacccaac > 1:111316/1‑226 (MQ=255) gaaagaCGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGAGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACAAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCACCCACCCAGCGCAAc > 2:243831/1‑227 (MQ=255) aaataCCAAAACGGTCACCATATCGTGAAAGGCAAGAATGGGGACAGCC‑GAAAAACTTTGCTTCCCAACCGGATTGTGAAGCTGGGAGACGAATAAGCCATCCTTCAACCCCATCTCAACAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCg < 1:275117/228‑1 (MQ=255) aaagaGGAAAACGGCAACCAGATCGGCAAAGGGAAGAAAGGTGACAAGC‑CGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCg < 2:269055/228‑1 (MQ=255) aaagaCGAAAACGGAAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCg < 2:253512/228‑1 (MQ=255) aaaagcGAAAACGGCAACCAGAACGGCAAAGGGAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCg < 2:182705/223‑1 (MQ=255) agccaaaaaCGGCAACCAGATAGGGAAGGGAAGAAAAGGTGACGAGG‑TGATAACTTTGCTATCACACTGTAATGCAAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAAACAACGCCTGGCCCCGCTGGCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCg < 1:692869/221‑1 (MQ=255) gaagAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGAACAGC‑TGATAACTTTGCTTCCCAACGGGATTGATAAGCTGGGAGACGAATAACCCAGCCTTCAACCCCATCCCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTCCCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTg < 2:140370/225‑1 (MQ=255) aaaaCGGCAACCAGATCGGAAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACACCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACaa > 2:502356/1‑189 (MQ=255) aaaccggatacAGATCGGCAAAAGGAAGAAAGGGGACAAGA‑TGAAAACTTTGCTTCCCAACTGGATTGAGAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCCCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGaa < 1:188024/218‑1 (MQ=255) aaccgtaaCCAGTGCGGCAAAGGCAAAAAAGGTGACAAGCTTGAT‑ACTTTGCTTCCAGACTTGACTGACAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCCAGCCACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGc < 1:129111/218‑1 (MQ=255) ggCAACCAGATCGGAAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATa < 2:459510/226‑1 (MQ=255) cgcaacctcgccGGCAAAGGGAAGAAAGGTGACAAGC‑TGATAACGCTGCTTCCCAACTGGATTGATAAGCCGGGAGCCGAATAAACCAGCCTTCAACCCCATCCCATCAAGCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATa < 1:669577/215‑1 (MQ=255) aacccaaTCGGCAAAGGCAAGAAAGAGTACAAGC‑AGATAACTTTGCTTCCCACCTGGATTGATAAGCGGGGAGACGAACAAACCAGCCTTCAACCCCATCACACCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTCCCCCAACCGGATCCACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCa < 1:218879/222‑1 (MQ=255) aaCCAGAACGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCa < 2:297549/228‑1 (MQ=255) cccaagcGGCAAAGGCAAGAAAGGGGACAAGC‑TGATAACTTTGCCTCCCAACTGGATTGATAAGCTGGGAAACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCa < 1:539490/220‑1 (MQ=255) aggtCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCGCCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCa < 2:47028/225‑1 (MQ=255) gCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCCACCCCATCTCATCAATCAACGCCAGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATAACCCCCACCGACTACACAGCCGCATACAATTCCACCAGCACCCACCCACCCAGCGCCCCCCCTAGCGAAAACCCCATCCAGGAAGGaaaga > 1:346089/1‑225 (MQ=255) gACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTCCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCAACCAAGCGCCACCGCTGGCGCATACAGCATTAAGGAAGGATATGCGCGTGAtttt > 2:465206/1‑226 (MQ=255) cgATAACTTTCCTTCCCCACTGGATTAGTAAACTGGGAGACGAAAAACCCAGCCTTCAACCCCACCACATCAACCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTtcaccgtcac < 1:553859/227‑1 (MQ=255) aTAACTTTGCTTCCCAACTGCATTGATAAGCTGGGAGACGAATAACCCAGCCTTCCACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATCCACCACAATTACCCCAACCGGTTCCACAACCGGCACCAATTCCACCAGCACCCAGCCCCCCAGCACCCACGCTGACACAAACCGCATTCCGCACAGAAAACCGAGTCCTTtccccgtcacc > 1:504182/1‑227 (MQ=255) tGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGATTACCGCATTCAGGAAGGAAATGCGAGGGATTTCACCGTCCCCGGCACAAc > 2:576468/1‑228 (MQ=255) tGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCCATGCACCACAATTACCCCAACCGGATACACACCCGGCTACAATTCCACCAGCACCAAGCCACCCAGCGCAACCGCCGGCGAAAACCCCATCCACAAAGCAAATACGACAGATTtcaccgtcaaccgacaaac > 1:229128/1‑218 (MQ=255) tGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCCGCCGGGTTTTTGCTATGCACCCCAATTACCCCAACCGGCTACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCCAATACCCCACTCACAACAGCAACGCGCGAGACTTCACCGCCACCGGCACAAc > 1:3426/1‑228 (MQ=255) ccaccggcttattAAGCTGCGAGACGGATTACCCCGCCTTTAACCCCATCCACACCATCAACGCCCCGCCCCGCTGCCGGGTTCTTGCTATCCACCCCAATGACCCCAACCGGAGACCCAGCCGGATACAATTCCAACAGCACCCAGCCACCAAGCGTCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg < 1:293624/216‑1 (MQ=255) gATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCCAGTGATTTCACCGTCACCGGCACAACCGGTCCGCCcaaa > 2:540746/1‑228 (MQ=255) gaaaaGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCCCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCCCCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAagag < 2:500791/225‑1 (MQ=255) ttagcgcggggggcGAATAAACCGCCCTTCAACCCCACCCCAGCAAACAACGCCCAGGCCCGAGGCGGAGGTTTTTCTATGCACCACACTTACCCCACCCGGAGACACAGCCGGAGACAATTCCACCAGCACCCATCCACCCAGCGCCACCGCTGGCGAATACCTCAGTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAgg < 1:219374/215‑1 (MQ=255) tcggAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCACCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGAATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCCCCACCGCTGGCGAATACCGCATTCAGCAAGCAAATGCGCGAGATTTCACCGTCCCCCGCCCCACCGATCAGCCAAAAAGAggatga > 1:265269/3‑222 (MQ=255) cggggGACCAATAAACCAGCCCTCACCCCCACCCCACACATCCACCCCCGGCCCCCCTGCCGGGGTTTTTCTATGCCCCACAATTCCCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCCCCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTAcc < 1:676601/227‑1 (MQ=255) gggAGACGAATAAACCAGCCTTCAACCCCCTCCCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCCCAATTCCCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAagag < 2:265269/220‑1 (MQ=255) gCCTTCAACCCCATCTCCTCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGCTTTCCCCGTCCCCGGCCCAACCCCACCGCCAAAAAGAGGCGGACCCATGTCGAAAACGTcccc > 1:458035/1‑228 (MQ=255) ccTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAAGCGTACCAATGTCGCTCTAGCcaccc > 1:149178/1‑228 (MQ=255) ccccccATCTCACCAACCACCCCCGGGCCCCGCGGCCGGGTTTTTGCTATGCCCCCCAATTCCCCCAACCGGATACACCGCCGGATACAATTCCACCAGCACCCAGCCCCCCAGCGCCTCCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCcgcgcg < 1:576468/226‑1 (MQ=255) acccccAACCCACCAAACAACCCCCGGCCCCGCTGCCGGGTTTTTGCCATGCACCACACTCACCCCAACCGGATCCACGGCCGGATACAAGCCCAACAGCACCCAGCCACCCAGCGCCCCCGCTGGCGAATACCGCAGTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCcgcg < 1:243831/224‑1 (MQ=255) aaCCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCCGGCGAATACCGCATCACGGAAGGAAATCCGAGGGATGTCCCCGCCACAGGCCCACCCCTCCAGCCAAAAAAAAGCGAACAAAAGTCAAAAAAATCCcacgcacg > 1:324898/1‑228 (MQ=255) cATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACCAtt > 1:421596/1‑87 (MQ=255) aTCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTc < 2:421596/87‑1 (MQ=255) | TGGATAACGACGGCAACCGGAAGCCAATCAGTAACGGCGCGTTTTATCGACTGATTGAGCAGGCCAAAGGGAGAGGATTGATTAGCGTTGAACAGGAAATCAAACACAAGAAAGACGAAAACGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGC‑TGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCG > NC_000913/2565125‑2565568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |