| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,065,172 | G→A | 11.6% | G198G (GGC→GGT) | yihO ← | putative sulphoquinovose importer |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,065,172 | 0 | G | A | 11.6% | 157.4 / 2.0 | 75 | G198G (GGC→GGT) | yihO | putative sulphoquinovose importer |
| Reads supporting (aligned to +/- strand): ref base G (30/32); new base A (7/2); total (39/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTAATATCATTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATC > NC_000913/4064954‑4065394 | ttaaataatatcacgcaaTACGGGGTGTAAAGAACCTAAACCACAAATTTGACAATAAAGGCCGCCAGGGTAAACAAGTTAACAATGCATAAAACCAGCAATGGCGGATTCCGAAATGCCGTGAAAAATGATTTGAGAATCCTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATCCTCTTTGAAGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATg < 1:248376/211‑1 (MQ=255)ttAATATCATCCAACACATACTGGGTGTAAAAGACCGTAATCGCCAGTTTGATATAAAATGCCGCCAGGTTACAAAAATTAGCAATGCAAAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATg < 2:701239/228‑1 (MQ=255) ttCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCTCGCAAAATGATTTGAGAATACTGGCTTTATGTCAGCTTGGCTTTGT‑TACACATTAATGCCTTTTGACG‑CTTTGTAGG‑CCAGCAATCTTAAAAA‑AAAACAGCCAATTGAGGACaaaa > 1:26838/1‑228 (MQ=255) ttCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCGTTAGC‑ACACC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATa > 2:652447/1‑228 (MQ=255) cacattccTGGGTTTAAAAGACCTGAACCGCAATTTTAATATAAAATGCCGCCAGGGTAAACAAGTTAGCAAGGCATAAAACAAGAAATGGCGGATGCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTg < 1:24096/221‑1 (MQ=255) cacaTACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGGTTCCAAA‑TAATGCTCTTTGACGCCTCTTGAGC‑CCGGC‑ATCTTAAAAATAAAACCACCAATGGCGAACATAAATGc > 1:522166/1‑228 (MQ=255) gggTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAgg > 2:485269/1‑228 (MQ=255) taaaaggcccTGAAACGCCAGGTTGATAGTAAATGCCGACAGGGTAAACAAGTTAGCAATGCAAAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTGGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATa < 2:193512/220‑1 (MQ=255) tAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTTAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATACTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCCTAAAAATAAAGCCGCCAATGGAGAACATAAGGACCGCACAGGCCTaa > 2:11677/1‑228 (MQ=255) cTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTAGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCCCTTTGACGCTCCTGTAGA‑ACAGC‑ATCATCAAAATAAAACCGCCAATGCGTACCATAAGTACCACACAGCCAAAACCAAcaga > 1:314696/1‑225 (MQ=255) aaTCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATAACGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGCCGTTGTGACCACA‑TAATGCTCTTTGACGCCTCTTTAGC‑CAAGC‑ATCAATAAAATAAACCCGCCAATGGAGAACATAAATGCCTCACAgaaacaaacaaaagatag > 1:311860/1‑211 (MQ=255) tttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGga > 2:56205/1‑183 (MQ=255) ttaaaaTGCCGCGAGGTGAACCATTTTAGCAACGAAAAAACCAAGCAAGGGATGTTCCCGAAATGTCGCGAAAATTGATTTGATCATACTGGTTTGAGGCCCGATTGGCGTTGTACCCACA‑TAATGCTCTGTGACGCCGCTGTAGC‑ACGGA‑ATGAAAAAAATAAAGCCGCCAATGGAGAACAGAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGa < 1:11677/225‑1 (MQ=255) atTAAATGCCGCCAGGGTTAACAAGTTAGAAAGGCATAAAACCAGCAATGGCGGATCCCGAAATATCGCACAAAATGATTTGAGAATACTGGCTTTATGTGCGGTTGGGGTTGTGACCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ACCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGa < 2:331562/228‑1 (MQ=255) ccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGGCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTTACGCCTCTGTAGG‑CCAGC‑ATCCTAACACTAAAACCGCCAATGGGGAACATAAGTGCCGCACAGCCATAACAGAAGGTTGCACAAGAAAAAAGCGAcgccaaacaaa > 1:331562/1‑218 (MQ=255) ccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACCTGCTTTATGCCCGGTTGGCGTTGTGACCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAACCGCCAATGGAGAACATAAGGGCCGAACAGCCATAACCGACGCTTACATCGGAAAAAAGCAAcggaaaacgaa > 1:445207/1‑218 (MQ=255) ggtaacaaaGTTAGAAATTCATAAAACCATCAATGGCGGTTTCCGAAATGTCGGGCAAAATGATTTGAGAATACTGGTTTTATGTCCGGTTGGCGTTGGGTCCACA‑TAATGCTCTTTGACGCCTCTGAAGC‑ACAGC‑ATCATAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATaaa < 1:652447/221‑1 (MQ=255) acaATTTAGAAATGCATAAAACCAGCATTGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCa < 2:522166/228‑1 (MQ=255) acaAGTTAGAAATGCTTTAAACCAGCAAGGGCTGTTTCCGAAGTTTCGAGGAAAATGATTTGAGAATCCGGGCCTTATGTCCGGTTGGAGTTGTGACCAAA‑AAATGCCCTTTGGCGCCTCTGTAGC‑ACAGC‑ATCAAAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCa < 1:217449/228‑1 (MQ=255) aataagagtaaggCATAAAACCGACAATGGCGAGTTCCGAAATGTCGCGAAAAATGATTGTAAAAGACAGGCTTTAGGTCCGGTTGGCTTTGTGTCAGCA‑TAATGCTTTTTGACGCCCCTGAAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCa < 2:163547/215‑1 (MQ=255) ttAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCCCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGAATGGAAAGGAGTAAAGGCCACggg > 2:430861/1‑226 (MQ=255) aGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTAc > 2:546369/1‑227 (MQ=255) tGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGACCATAAGTGCCGCACAGGACTAACCGACGGTTCAGTCAGAAAAAAGCGACTGCAAAGGAAAAAAACCCACGGGAAAAAtaa > 1:605594/1‑226 (MQ=255) tGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATAATGGCTTTATGTCCAGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGTAGAACATAAGTGCCGCACAGGCAAAACCAACGACGCAGTAGGAAAAAAGCAATTGCACCGAAAAAAACACCACGGAAAAAACCa > 1:302770/1‑228 (MQ=255) tGCATAAAACCAGAAATGGCGGATTCCGAAATATCGCGCAAAATGATTTAAGAATACTGGCTTTATGGCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAAGCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGTAAAAAACGAACGCAACGGAATAAACGCACCGGTAAAAAACa > 2:660740/1‑228 (MQ=255) gCATAAAACCAGAAAGGGGGGATTCCGAAATAGCGCGAAAAATGATTTGAGAATACTGGTTTTATGCCCGGTTGGAGTTGTGCCCACA‑TAATGCTCTTTGACGCCTCTGGAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCaa < 2:314696/228‑1 (MQ=255) cATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑CCAGC‑ATCATCAAACTAAAGCCGCCAATGGAGACCATACGGACCGGACAGGCATAACCGACGGATGAGTCCGGAAAAAGCGACTGCAACGCAATAAACACCCCGGGAAAAACCAAt > 1:38197/1‑228 (MQ=255) cATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAAt > 2:222383/1‑228 (MQ=255) gCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTTGCTTTATGTCCGGTTGGCGTTGTGTCCAAA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAACCGCCAATGGAGAACCTAAGTGCCCGACAGGCCTAAACGACGCCTGAGTCAGAAAAAAGAGACTGAAACGGAATAAACCCCACGGTACAAAACacgtatcttataa > 1:163547/1‑216 (MQ=255) gCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAACAATAAAGCCGCCATTGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAACGACTGCAACGAAATAAACACCAAGGTGCAAATCCATAAcccgaagg > 1:549320/1‑223 (MQ=255) ttCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCaccacc > 2:421968/1‑227 (MQ=255) cgcgCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTCGC‑ACCGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAACAGCGACTGCAACGGAATAAACGCCACGGTACAAAACAATACCCCTATGGTAGCACCCCCCTGGCgtgagt > 2:695573/1‑222 (MQ=255) cgcgCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAATCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGCCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAAAAGCCCAATGGTTACACACACCTGCAGGTAAg > 1:443082/1‑227 (MQ=255) aTTTGAAAATGCTGGCTTTATGTCCGGTTGGGGTTGTGTCCACA‑AAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTgcg < 2:490876/228‑1 (MQ=255) ttGAAAATTCTGGTTTTATCTGCGTGTGGCGTTGTACACAAA‑GTATCCTATTAGGCCCCTATGAAGCAACAGC‑AT‑AAAAAAAAAAAGCTGCCAATGGAGAAAATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCCCCACCCTGGCGGTAAGCCGCGAGCTgcgcg < 1:490468/228‑1 (MQ=255) cccGGTTGGCGTGGTGTACACA‑TAATGCCCTTTGACGCCTCTGTAGC‑CAAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACAAAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGt < 2:605594/227‑1 (MQ=255) cGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGCCGGAAAGCCGCAAGCTCCCGGGGCCCAATCGGGGTTTTGGTaa > 1:109074/1‑228 (MQ=255) cGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACAAACCTGGCGGTAAGCCGCGACCTGCCGGCCCTCATTCGGGTTTTTGGTaa > 2:598562/1‑228 (MQ=255) cGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTCGAGTCAGAAAAAAGCGCCTGCACCGGAATAAAAGCCCCGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGCAAGCCGCGAGCTGACCGCACTCCTTCGGGGTTTTGGGaa > 1:419815/1‑228 (MQ=255) cGGGTGGCGTTGGCACAAAA‑TAATGCTTGTTGGAGCCTCTGGAGC‑ACAGC‑AACAAAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCAAAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTaa < 1:485269/228‑1 (MQ=255) gTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAAt > 2:347518/1‑227 (MQ=255) caca‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCAAAGGCATAACCAACGGTTGAGACAGACAAAAGCGACTGCAACGGATTAAAAGCCACAGACAAAATCAAAAACCCTATGGGTGAACAACCCAGGAGGAAAGCGCCAACCAGCACCCCCCCATCCGGGGTTTGGGTAATTGCCAGGACCATAGc > 1:45562/1‑228 (MQ=255) aaaaataatgcatggagACGCCCTTGTACC‑ACAGA‑AACAAAAAAATAAGGCCGCCAATGGAAAAAATAAGGGCCGAACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAAGCAATAGCCCTATGGTTGCTCCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCg < 1:678992/212‑1 (MQ=255) aca‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCTCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGatcat < 2:45562/224‑1 (MQ=255) gCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACg > 2:284876/1‑125 (MQ=255) ttttggcggCCGCTGAAGC‑AAAGC‑AAAAAAAAAAAAAAGCGGCCAAGGGAAAACAAAAGTGCCGGACAGGCAAAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAg < 1:347518/220‑1 (MQ=255) tctTGGACGCCTCTGTAGA‑ACAGC‑ATAATAAAAATAAAGCCTCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCGCCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAg < 2:311860/228‑1 (MQ=255) ctTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGAAATTGCCGGGATCATCGCACCATACGac > 2:114976/1‑226 (MQ=255) tttGGCGCCTTGTTAGC‑ACATA‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 2:445207/228‑1 (MQ=255) tttGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGGCCGCGCTCCTTCGGGCTTTTGGTAATTGCCGGGATCATCGCACCATACGAGc > 2:678992/1‑227 (MQ=255) ttggACGCCTCTGTAGC‑ACAGC‑ATCATAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 2:109074/225‑1 (MQ=255) aagagagagctagagc‑acagc‑acAAAAAAAAGAAAGCCGCCAAGGGAAAACAAAAGGGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 1:170891/214‑1 (MQ=255) ggACGCCTCTGAAGC‑ACAGA‑ATAATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 2:594253/225‑1 (MQ=255) gACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGAGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGACAGCCGCGACCACCACCCGCTCATTCGGGTTTTTGGTAATTGCCGGGGTCATCCCCCCCAACGAGCAGtt > 1:594253/1‑228 (MQ=255) ctcagtagacaaGC‑AACAAAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatca < 2:26838/217‑1 (MQ=255) tttttgacgcccaaattaaaaaaaaaaCCCCGCAAATGGAAAAGATAAGTGCCGCACAGGCATACCCGACGGTTGAGTCAGAAACAAGCGACTGCAACGGAATAAACGCCACGGTACAACTCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGTGATTACCCCACCATTCGAGCATTtcatca < 1:430861/209‑1 (MQ=255) ctGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatcaa > 2:421347/1‑226 (MQ=255) ctGTAGC‑AAAGC‑AGCAAAAAAATAAGGCCGCCAATGGAGAACATAAGTGCCGCACAGGCAGAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGa < 2:555650/228‑1 (MQ=255) cgtgtgagccatgaaaaaaaaaaaaaaGGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGTTTGAGTCAGAAAAACGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatca < 1:222383/209‑1 (MQ=255) tgtgtgccagaaaacaaaaaaaaaaAGCCGCCAAAGGAAAACACAAGGTCCGCACAGGCATAACCGACGGTGGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATCCGAGCAGTTCATCAGa < 1:452606/211‑1 (MQ=255) caGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGGAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGa > 2:494195/1‑228 (MQ=255) ccagaacatAAAAAAAAATCCGCCAATGGAGAACATAAGTTCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGa < 2:167684/222‑1 (MQ=255) aGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCACCGGAATAAACGCCACGGTACAAATCAATAGCCCTATCGTTGCACCACCCCGGCGGTAAGCCGCGAGCTGAGCCCGCTCATTCGGGTTTTGGGTATTTGCCGGGGTCATCGCCCCATACGACCAGTGCCTCAg > 1:555650/1‑218 (MQ=255) c‑atcatAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGGGCAGTTCATCAGACGGTATGAAAg > 2:294824/1‑228 (MQ=255) c‑atcatAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGc > 2:170891/1‑206 (MQ=255) tAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCAGCGCGCCGTCATTCGGGGATTCGGTAATTGCCGGGATCATCGCACCATCCCAGCAGTTCATCAGCCTGTCTGAAAGTCCaa > 1:167684/1‑228 (MQ=255) tAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGGTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCCCATTCGGGTTTTTGGTAATTGCCGGGATCCTCGCACCAAAAGCGCAGTTTATCAGACTGAATGAAAAGCCaa > 1:88319/1‑228 (MQ=255) tAAAAATAAAGCCGCCAATGGAGAAAATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGAGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACACAGGCGGTAAGCCGCGAGCCACGCGCGCTCCTTCGGGTTTTTGGGAATTGCCGGGATCATCGCACCATACGCACAGTTCATACAACTGGATGCAAGTCCaa > 1:162900/1‑228 (MQ=255) tAAAAAAAAGACCGCCAATGGAAAAAAGAAGGGCCGCACAGGCATAACCGCCGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATCAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCTCCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:294824/228‑1 (MQ=255) aaaaaaaaaAGCCGACAAAGGAGAACATAAGGGGCGCCCAGGCATAACCGACGGTTGAGTCAAAAAAAAGCGACGGCCACGGAATAAACGGCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:421968/227‑1 (MQ=255) aaaaaaTAAAGCCGGCAATGGAAAAAAAAAGTGCCGCACAGGCATAACCGTCGGGTGAGACAGAAAAAAGCGACTGCAACGGAATTAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:598562/227‑1 (MQ=255) aaaaaaaaGCCGACAATGGAAAACAAAAGGGCCGCACAGGGCTAACCGACGGTTGAGTCAGAAAAACGCGACTGCAACGGAATAAACGCCAAGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:146193/226‑1 (MQ=255) aaaaaaaaACCGCCAATGGAAAACAACAGGGCCACACAGGCATAACCGACGGTTGAGTCCGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTTTGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:695573/226‑1 (MQ=255) aaaaTAAAGCCGGCAATGGACAACATAAGTGCCCGACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCGCCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 2:302770/226‑1 (MQ=255) caaGCCGCCAAGGGTGAACATAAGTCCCGCACAGTCATAACCGACGGTTGAGTCAGAAAAAGGCGACTGCAACGGAATTAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAAcatc < 2:666998/225‑1 (MQ=255) | TTAATATCATTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATC > NC_000913/4064954‑4065394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |