New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288917 =	NA (NA)	7 (0.090)	4/410	NT	10.3%	intergenic (‑5/+146)	yejO/insH1	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator
	?	NC_000913	= 3560228	61 (0.780)					pseudogene (224/606 nt)	glpR	pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon

AGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT  >  NC_000913/2288700‑2289150                                                                                                                                                                                                                          |                                                                                                                                                                                                                                           aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATGTGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATTTCTTTTTCCAGTACAAAACCCTAAACCGTTCCCCCCTACTCAACACTTGATTGCAAAGTCATGGGGGAATATAAAGAACGttcctttataacaac                                                                                                                                                                                                                        >  2:957641/1‑224 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTTAACCAGCTGGATATCTTTTTTCAGGACAACACCCTCAACTTTCTCACCATCCTCACCAGTTGATTCCAATGTAATGAGTGAAATAAAAGAAGGTGCGAAAAAACGGGGa                                                                                                                                                                                                                       >  1:511166/1‑239 (MQ=255)  gTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTCCACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCACTGGGTATCTTTTTCCAGGACAACACCATCCACTGTCTCACCATACTCAAAAGTTTATGCCAATGATCTTGGTGACTTTAAGGAAAGTGCGATTCAACggggga                                                                                                                                                                                                                      >  2:748066/1‑237 (MQ=255)   tATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTTAACCAGCTGGATATCTTTTTCCCGGGCAACACCATCAACTGTCTCACCAAACTCAAACGTTTATGCCATATCTATGGGGGGAATTaaggactgtcccttttacaccacacc                                                                                                                                                                                                                     >  2:983799/1‑218 (MQ=255)             cgcCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCGCTGGGTATTTTTTTTCCGGACCACACCATCCACTGTCTCACCCTACTCAAAAGTTTATGCCAATTCTTTGGGGGGATTTAAGGAAAGGGCGAAAAAAAGGGGAAAATATTTTCgg                                                                                                                                                                                                           >  1:642238/1‑239 (MQ=255)                       ttCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                                                                                                                 <  2:642238/239‑1 (MQ=255)                            tGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAAAACCATCAAATGGTTCACCATACTCACCAGTTGATGGCAAAGCTATGGGTGAATTTAAGGAAGGGGGGAATAAGAGGGGAAATTCTTTTCGGCTGGCTCAGtacat                                                                                                                                                                                             >  2:1397/1‑234 (MQ=255)                                        cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCTGGATATCTTTTTCCAGGACAACACCATCAAATGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGGATATAAGGAAGGTGCGAATAAGCGGGGGAATTTTTTTCTGCTGGCTCCGCCATTTC‑CTTTCTTCATg                                                                                                                                                                               >  2:192310/1‑239 (MQ=255)                                           cGTTAATTTCAGTATTATTACTTACACAAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGCTTTTCGTATTATTGGCGGTCACCTAAACCAGCTGGGTATCTTTTTTTTGGACAACACCATCACACGTATCACCATACTCCAAAATTGATGCCAATGCTCTGGGT‑AATATAAGGAAGGGTCGAATAAGCGGGGAAATTCTTCTCGGCTACACCCGGCATTTC‑ATTTTTTGATGtttt                                                                                                                                                                           >  2:847211/1‑238 (MQ=255)                                                       tattatTACTTACACCAAATTCTTTTATATCCTGTTCTCCGGCAGGAGTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACAGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAg                                                                                                                                                                                                                             <  1:306928/179‑1 (MQ=255)                                                                  tcttctaaTTTTTTTTTTTGTTGTTCGTCGCCACGATTAATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCAGCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTTACTCAGTCATTTC‑ATTGCTTCATGTTTGAGCCGAGTTTTTCTCCCGTtaa                                                                                                                                                     <  1:495703/233‑1 (MQ=37)                                                                    acCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCACTGGATATCTTTTTTCATGACAACACCATCAACTGTCTCCCCATACTCAACAGTTTATGCCAATGCTATTGGGGAAAATAAGGAAAGGTCGACTAAACGGGGGAATTCTTTCCGGCGGGCTCGCTCATTTCTTTTTTTTCAT‑TTTTATGCGGTTTTTTTTTCCGTaaaaa                                                                                                                                                   >  1:215260/1‑237 (MQ=255)                                                                       atgtgtataaaggacaggTTCTCCGGCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc                                                                                                                                                 <  2:561757/221‑1 (MQ=255)                                                                        aaTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATAAACCAGCTGGGTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCCTACTCCACAGTTGATGCCCATTCTTTGGGGGGATATAAGGGAGGTGCGAATAAGCCGGGAAATTCTTTCCGGCCGCACCCCTTACTTC‑TCTTTTTTATGTTTTTGCCGAATTTTTTTCCCGTTAATGCCtt                                                                                                                                               >  1:441318/1‑239 (MQ=255)                                                                         aTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAAATGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTTTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTTAGCCGATTTTTTTTCCCGTAAATGCCTTg                                                                                                                                              >  2:742117/1‑239 (MQ=255)                                                                           tCTTTTTTTTTCGGTTCTCCGGCAGGTTTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCATTTTCCAGGACAACACCATCAACTGTCTCAACATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                                                                                                                            <  1:748066/239‑1 (MQ=37)                                                                             ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc                                                                                                                                                 <  2:399049/232‑1 (MQ=255)                                                                                       tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTTCAGGACAACACCATCCACTGTCTCACCATAACCAACAGTTGATTCCAATGCTATGGGTGAATATAAGGAAGGGGCGAAAAAACGGGGGAAATCTTCTCGGCCGGACCAATCATTTT‑ATTTCTTTCCGTTTGAGCCCATTTTTTTTCCCCGAAATGCCTTTAAACAGcc                                                                                                                                      >  1:399049/1‑233 (MQ=255)                                                                                                   ggATTGATTTTCGTATTATTGGCGGTTCCCTAAACCCGCCGGGTATCTTTTTTCAGGGCAACCCCATCCACTGTCTCACCATACTCAAAAATTGATTCCAAAGCCATTGGTGAATTTAAGGGAGGTGCGAAAAAAAGGGGAACTTTTTCTCGGCTGGCCTAGCCATTTC‑CTTTTTTCATGTTTGTGCCGGTTTTTTTTCCCCTAAAATCCTTTCATCAcccccttctcttttacaaatt                                                                                                                    >  1:561757/1‑221 (MQ=255)                                                                                                              cGTATTATTGGCGGTCCCATAAACCAGCTGGATATTTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGGAATTCTTTTCGGCTGACTCAGTCATTTC‑ATTTTTTCATGTTTTAGCCGATTTTTTTTCCCGTTAAATCCTTTAATTAACCTATTTTTACCGTTTTTTTGCCCTTTAAgg                                                                                                         >  2:177670/1‑239 (MQ=255)                                                                                                                       ggCGGGCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATccc                                                                                                <  2:960644/239‑1 (MQ=255)                                                                                                                              ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGGCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTCGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGtttt                                                                                         <  2:880400/239‑1 (MQ=255)                                                                                                                                      cAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgaga                                                                                 >  2:217908/1‑239 (MQ=255)                                                                                                                                        gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgaga                                                                                 >  2:237308/1‑237 (MQ=255)                                                                                                                                        gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                                  <  2:247525/236‑1 (MQ=255)                                                                                                                                        gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgaa                                                                                  >  1:247525/1‑235 (MQ=255)                                                                                                                                        gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTATCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTTGCCATTTAAGGAGTTATCCCCAGTTTTTAGTgaga                                                                                 >  2:770950/1‑237 (MQ=255)                                                                                                                                        gCTGGATATCTTTTTACAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGTGAATATAAGGTAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGCCATTTA‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAACTCACTTCAATCAGCCTCTTTAGACCGTTTCTTGGCCATTTAAGGCGTTTTCCCCAGtttttgtggagat                                                                                >  1:228460/1‑230 (MQ=18)                                                                                                                                         cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                                                                                                                     >  2:920661/1‑89 (MQ=255)                                                                                                                                         cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                                                                                                                     <  1:920661/89‑1 (MQ=255)                                                                                                                                               atCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                                        <  2:552591/239‑1 (MQ=255)                                                                                                                                                 ttttttCGAGGACAACCCCCTCAACTGTCTCACCAAACTCAACTGTTGATGCCAATGCTATGGGTGAATATAAGGAATGGGCGAATAAGCGGGGAAATTCTTCGCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACt                                                                      <  1:192310/238‑1 (MQ=17)                                                                                                                                                      tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 <  2:215260/239‑1 (MQ=255)                                                                                                                                                      tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 <  2:511166/239‑1 (MQ=255)                                                                                                                                                      tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAAATCTCTCCCACTGACGt                                                                 >  1:61315/1‑239 (MQ=255)                                                                                                                                                           gACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCAt                                                            >  2:261069/1‑239 (MQ=255)                                                                                                                                                                cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                                                                                                                        >  2:260273/1‑158 (MQ=255)                                                                                                                                                                cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                                                                                                                        <  1:260273/158‑1 (MQ=255)                                                                                                                                                                cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGt                                                       <  2:441318/239‑1 (MQ=255)                                                                                                                                                                cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAATGAGATCTCTCCCACTGACGTATCATTTgg                                                        >  1:424003/1‑238 (MQ=255)                                                                                                                                                                     tCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGATTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGc                                                   >  2:264785/1‑238 (MQ=255)                                                                                                                                                                         ctttcccACCATTCCAAAAAGTTGAGGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGaa                                              <  1:742117/233‑1 (MQ=255)                                                                                                                                                                           ttttcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                                  <  1:194399/198‑1 (MQ=255)                                                                                                                                                                           gTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                                  >  2:194399/1‑201 (MQ=255)                                                                                                                                                                            tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                                        <  2:923003/210‑1 (MQ=255)                                                                                                                                                                            tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                                        >  1:923003/1‑210 (MQ=255)                                                                                                                                                                                     tgcgaaCTGTTGGTGCCAATTGTGTGGGTGAATTTAAGGAAGGTTGTAATAAGCGGGGTAATTCTTCTCGGCTTCCTCATTCATTTC‑ATTTCTTCCTGTTTGAGCCGATTTTTTCGCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTTGTCCGCCCGAAACAGGTTGGCCa                                  <  1:217908/235‑1 (MQ=11)                                                                                                                                                                                           cAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTg                                                                     >  1:665909/1‑198 (MQ=255)                                                                                                                                                                                           cAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTg                                                                     <  2:665909/198‑1 (MQ=255)                                                                                                                                                                                             ttttggtccAATTGTATGGGTGAATATAAGGAAGGTGGGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAAt                          <  1:177670/232‑1 (MQ=255)                                                                                                                                                                                              ttGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGCGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATa                         >  2:396053/1‑239 (MQ=255)                                                                                                                                                                                                        tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                                                                                                                      <  2:384713/104‑1 (MQ=255)                                                                                                                                                                                                        tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                                                                                                                      >  1:384713/1‑104 (MQ=255)                                                                                                                                                                                                             tGGGTGAATATAAGGAAGGTGCGGATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 <  1:332325/184‑1 (MQ=25)                                                                                                                                                                                                             tGGGTGAATATAAGGAAGGTGCGGATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 >  2:332325/1‑184 (MQ=25)                                                                                                                                                                                                             tGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGt          >  2:538218/1‑239 (MQ=34)                                                                                                                                                                                                                   aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGt    >  2:942444/1‑239 (MQ=31)                                                                                                                                                                                                                   aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAAAATCGCCAGTTGGTTaaggt    >  1:442345/1‑235 (MQ=14)                                                                                                                                                                                                                   aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCAAGTTTTTAGTGAGATCTCTCCCACTTACGAATCATTTGGTCCGCCCGAAACAGGTTGGCCACCGGAAAAAAAATCCCACGTTGGGTATGGt    >  1:522394/1‑239 (MQ=11)                                                                                                                                                                                                                     tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGCGATTTCTCCCCCTGACGTTTCCTTTGGTCCGCCCGACACCGGTTGGCCACCGTGAATAACATCGCCCGTTGGTGATCGttt  >  1:214903/1‑239 (MQ=11)                                                                                                                                                                                                                          |                                                                                                                                                                                                                                           AGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC‑ATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT  >  NC_000913/2288700‑2289150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.