New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288917 =NA (NA)7 (0.090) 4/410 NT 10.3% intergenic (‑5/+146) yejO/insH1 pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator
?NC_000913 = 3560228 61 (0.780)pseudogene (224/606 nt) glpR pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon

AGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT  >  NC_000913/2288700‑2289150
                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          
aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATGTGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATTTCTTTTTCCAGTACAAAACCCTAAACCGTTCCCCCCTACTCAACACTTGATTGCAAAGTCATGGGGGAATATAAAGAACGttcctttataacaac                                                                                                                                                                                                                        >  2:957641/1‑224 (MQ=255)
aGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTTAACCAGCTGGATATCTTTTTTCAGGACAACACCCTCAACTTTCTCACCATCCTCACCAGTTGATTCCAATGTAATGAGTGAAATAAAAGAAGGTGCGAAAAAACGGGGa                                                                                                                                                                                                                       >  1:511166/1‑239 (MQ=255)
 gTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTCCACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCACTGGGTATCTTTTTCCAGGACAACACCATCCACTGTCTCACCATACTCAAAAGTTTATGCCAATGATCTTGGTGACTTTAAGGAAAGTGCGATTCAACggggga                                                                                                                                                                                                                      >  2:748066/1‑237 (MQ=255)
  tATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTTAACCAGCTGGATATCTTTTTCCCGGGCAACACCATCAACTGTCTCACCAAACTCAAACGTTTATGCCATATCTATGGGGGGAATTaaggactgtcccttttacaccacacc                                                                                                                                                                                                                     >  2:983799/1‑218 (MQ=255)
            cgcCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCGCTGGGTATTTTTTTTCCGGACCACACCATCCACTGTCTCACCCTACTCAAAAGTTTATGCCAATTCTTTGGGGGGATTTAAGGAAAGGGCGAAAAAAAGGGGAAAATATTTTCgg                                                                                                                                                                                                           >  1:642238/1‑239 (MQ=255)
                      ttCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                                                                                                                 <  2:642238/239‑1 (MQ=255)
                           tGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAAAACCATCAAATGGTTCACCATACTCACCAGTTGATGGCAAAGCTATGGGTGAATTTAAGGAAGGGGGGAATAAGAGGGGAAATTCTTTTCGGCTGGCTCAGtacat                                                                                                                                                                                             >  2:1397/1‑234 (MQ=255)
                                       cTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCTGGATATCTTTTTCCAGGACAACACCATCAAATGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGGATATAAGGAAGGTGCGAATAAGCGGGGGAATTTTTTTCTGCTGGCTCCGCCATTTCCTTTCTTCATg                                                                                                                                                                               >  2:192310/1‑239 (MQ=255)
                                          cGTTAATTTCAGTATTATTACTTACACAAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGCTTTTCGTATTATTGGCGGTCACCTAAACCAGCTGGGTATCTTTTTTTTGGACAACACCATCACACGTATCACCATACTCCAAAATTGATGCCAATGCTCTGGGTAATATAAGGAAGGGTCGAATAAGCGGGGAAATTCTTCTCGGCTACACCCGGCATTTCATTTTTTGATGtttt                                                                                                                                                                           >  2:847211/1‑238 (MQ=255)
                                                      tattatTACTTACACCAAATTCTTTTATATCCTGTTCTCCGGCAGGAGTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACAGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAg                                                                                                                                                                                                                             <  1:306928/179‑1 (MQ=255)
                                                                 tcttctaaTTTTTTTTTTTGTTGTTCGTCGCCACGATTAATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCAGCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTTACTCAGTCATTTCATTGCTTCATGTTTGAGCCGAGTTTTTCTCCCGTtaa                                                                                                                                                     <  1:495703/233‑1 (MQ=37)
                                                                   acCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCACTGGATATCTTTTTTCATGACAACACCATCAACTGTCTCCCCATACTCAACAGTTTATGCCAATGCTATTGGGGAAAATAAGGAAAGGTCGACTAAACGGGGGAATTCTTTCCGGCGGGCTCGCTCATTTCTTTTTTTTCATTTTTATGCGGTTTTTTTTTCCGTaaaaa                                                                                                                                                   >  1:215260/1‑237 (MQ=255)
                                                                      atgtgtataaaggacaggTTCTCCGGCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc                                                                                                                                                 <  2:561757/221‑1 (MQ=255)
                                                                       aaTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATAAACCAGCTGGGTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCCTACTCCACAGTTGATGCCCATTCTTTGGGGGGATATAAGGGAGGTGCGAATAAGCCGGGAAATTCTTTCCGGCCGCACCCCTTACTTCTCTTTTTTATGTTTTTGCCGAATTTTTTTCCCGTTAATGCCtt                                                                                                                                               >  1:441318/1‑239 (MQ=255)
                                                                        aTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAAATGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTTTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTTTCCCGTAAATGCCTTg                                                                                                                                              >  2:742117/1‑239 (MQ=255)
                                                                          tCTTTTTTTTTCGGTTCTCCGGCAGGTTTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCATTTTCCAGGACAACACCATCAACTGTCTCAACATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                                                                                                                            <  1:748066/239‑1 (MQ=37)
                                                                            ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc                                                                                                                                                 <  2:399049/232‑1 (MQ=255)
                                                                                      tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTTCAGGACAACACCATCCACTGTCTCACCATAACCAACAGTTGATTCCAATGCTATGGGTGAATATAAGGAAGGGGCGAAAAAACGGGGGAAATCTTCTCGGCCGGACCAATCATTTTATTTCTTTCCGTTTGAGCCCATTTTTTTTCCCCGAAATGCCTTTAAACAGcc                                                                                                                                      >  1:399049/1‑233 (MQ=255)
                                                                                                  ggATTGATTTTCGTATTATTGGCGGTTCCCTAAACCCGCCGGGTATCTTTTTTCAGGGCAACCCCATCCACTGTCTCACCATACTCAAAAATTGATTCCAAAGCCATTGGTGAATTTAAGGGAGGTGCGAAAAAAAGGGGAACTTTTTCTCGGCTGGCCTAGCCATTTCCTTTTTTCATGTTTGTGCCGGTTTTTTTTCCCCTAAAATCCTTTCATCAcccccttctcttttacaaatt                                                                                                                    >  1:561757/1‑221 (MQ=255)
                                                                                                             cGTATTATTGGCGGTCCCATAAACCAGCTGGATATTTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGGAATTCTTTTCGGCTGACTCAGTCATTTCATTTTTTCATGTTTTAGCCGATTTTTTTTCCCGTTAAATCCTTTAATTAACCTATTTTTACCGTTTTTTTGCCCTTTAAgg                                                                                                         >  2:177670/1‑239 (MQ=255)
                                                                                                                      ggCGGGCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATccc                                                                                                <  2:960644/239‑1 (MQ=255)
                                                                                                                             ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGGCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTCGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGtttt                                                                                         <  2:880400/239‑1 (MQ=255)
                                                                                                                                     cAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgaga                                                                                 >  2:217908/1‑239 (MQ=255)
                                                                                                                                       gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgaga                                                                                 >  2:237308/1‑237 (MQ=255)
                                                                                                                                       gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                                  <  2:247525/236‑1 (MQ=255)
                                                                                                                                       gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgaa                                                                                  >  1:247525/1‑235 (MQ=255)
                                                                                                                                       gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTATCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTTGCCATTTAAGGAGTTATCCCCAGTTTTTAGTgaga                                                                                 >  2:770950/1‑237 (MQ=255)
                                                                                                                                       gCTGGATATCTTTTTACAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGTGAATATAAGGTAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGCCATTTAATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAACTCACTTCAATCAGCCTCTTTAGACCGTTTCTTGGCCATTTAAGGCGTTTTCCCCAGtttttgtggagat                                                                                >  1:228460/1‑230 (MQ=18)
                                                                                                                                        cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                                                                                                                     >  2:920661/1‑89 (MQ=255)
                                                                                                                                        cTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg                                                                                                                                                                                                                                     <  1:920661/89‑1 (MQ=255)
                                                                                                                                              atCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                                        <  2:552591/239‑1 (MQ=255)
                                                                                                                                                ttttttCGAGGACAACCCCCTCAACTGTCTCACCAAACTCAACTGTTGATGCCAATGCTATGGGTGAATATAAGGAATGGGCGAATAAGCGGGGAAATTCTTCGCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACt                                                                      <  1:192310/238‑1 (MQ=17)
                                                                                                                                                     tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 <  2:215260/239‑1 (MQ=255)
                                                                                                                                                     tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 <  2:511166/239‑1 (MQ=255)
                                                                                                                                                     tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAAATCTCTCCCACTGACGt                                                                 >  1:61315/1‑239 (MQ=255)
                                                                                                                                                          gACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCAt                                                            >  2:261069/1‑239 (MQ=255)
                                                                                                                                                               cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                                                                                                                        >  2:260273/1‑158 (MQ=255)
                                                                                                                                                               cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                                                                                                                        <  1:260273/158‑1 (MQ=255)
                                                                                                                                                               cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGt                                                       <  2:441318/239‑1 (MQ=255)
                                                                                                                                                               cacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAATGAGATCTCTCCCACTGACGTATCATTTgg                                                        >  1:424003/1‑238 (MQ=255)
                                                                                                                                                                    tCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGATTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGc                                                   >  2:264785/1‑238 (MQ=255)
                                                                                                                                                                        ctttcccACCATTCCAAAAAGTTGAGGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGaa                                              <  1:742117/233‑1 (MQ=255)
                                                                                                                                                                          ttttcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                                  <  1:194399/198‑1 (MQ=255)
                                                                                                                                                                          gTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                                  >  2:194399/1‑201 (MQ=255)
                                                                                                                                                                           tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                                        <  2:923003/210‑1 (MQ=255)
                                                                                                                                                                           tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                                        >  1:923003/1‑210 (MQ=255)
                                                                                                                                                                                    tgcgaaCTGTTGGTGCCAATTGTGTGGGTGAATTTAAGGAAGGTTGTAATAAGCGGGGTAATTCTTCTCGGCTTCCTCATTCATTTCATTTCTTCCTGTTTGAGCCGATTTTTTCGCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTTGTCCGCCCGAAACAGGTTGGCCa                                  <  1:217908/235‑1 (MQ=11)
                                                                                                                                                                                          cAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTg                                                                     >  1:665909/1‑198 (MQ=255)
                                                                                                                                                                                          cAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTg                                                                     <  2:665909/198‑1 (MQ=255)
                                                                                                                                                                                            ttttggtccAATTGTATGGGTGAATATAAGGAAGGTGGGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAAt                          <  1:177670/232‑1 (MQ=255)
                                                                                                                                                                                             ttGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGCGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATa                         >  2:396053/1‑239 (MQ=255)
                                                                                                                                                                                                       tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                                                                                                                      <  2:384713/104‑1 (MQ=255)
                                                                                                                                                                                                       tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                                                                                                                      >  1:384713/1‑104 (MQ=255)
                                                                                                                                                                                                            tGGGTGAATATAAGGAAGGTGCGGATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 <  1:332325/184‑1 (MQ=25)
                                                                                                                                                                                                            tGGGTGAATATAAGGAAGGTGCGGATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                 >  2:332325/1‑184 (MQ=25)
                                                                                                                                                                                                            tGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGt          >  2:538218/1‑239 (MQ=34)
                                                                                                                                                                                                                  aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGt    >  2:942444/1‑239 (MQ=31)
                                                                                                                                                                                                                  aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAAAATCGCCAGTTGGTTaaggt    >  1:442345/1‑235 (MQ=14)
                                                                                                                                                                                                                  aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCAAGTTTTTAGTGAGATCTCTCCCACTTACGAATCATTTGGTCCGCCCGAAACAGGTTGGCCACCGGAAAAAAAATCCCACGTTGGGTATGGt    >  1:522394/1‑239 (MQ=11)
                                                                                                                                                                                                                    tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGCGATTTCTCCCCCTGACGTTTCCTTTGGTCCGCCCGACACCGGTTGGCCACCGTGAATAACATCGCCCGTTGGTGATCGttt  >  1:214903/1‑239 (MQ=11)
                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          
AGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTT  >  NC_000913/2288700‑2289150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.