Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 602,635 | A→G | 15.6% | E226G (GAG→GGG) | pheP → | phenylalanine transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 602,635 | 0 | A | G | 15.6% | 178.6 / 2.5 | 75 | E226G (GAG→GGG) | pheP | phenylalanine transporter |
Reads supporting (aligned to +/- strand): ref base A (13/48); new base G (11/2); total (25/50) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.05e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTAACCTGGTGAACGTGCGCTTATATGGCGAAACCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTCATTCTGGTAGCATCG > NC_000913/602404‑602870 | ttAACCTTGGTAACGTGCCGTTATATGGCGAAACCGGGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTAGGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCCCGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGAtt < 1:995890/239‑1 (MQ=255) tGAACGTGCGCTTATATGGCGAAACCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTAc < 2:256736/238‑1 (MQ=255) cGTGCGCTTATATGGCGAAACCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGGAATTATTTTCT‑CCCTCGGCGGTCTGGGGCGGGTTTGGGTTAGTGGC‑g > 2:281745/1‑239 (MQ=255) cgcTTATATGGCGAAACCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCCGTATCGACAACCTCTGGCGGTACGGTGGGTTCTTCGCCACCGGCTGGAAGTGGCCGGTTTTTGTC‑CGTG‑C‑GGGGATTTTTTTCT‑CCCTTTGGGGTCTGGGGGCGGTTGGGGTTTATGCC‑Gccgg > 1:158669/1‑236 (MQ=255) tttGGCGAACCCGATTTTTGTTTTGGTTTTATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTTGTGCTGGTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAgcgcg < 1:502215/237‑1 (MQ=255) cGAAACCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGGAATTTTGTTTT‑CCTTCGGCGGGCTGGGGCTTGTTGGGATTACTGCC‑CCCGAAAcgcgc‑ggt > 2:294975/1‑236 (MQ=255) gAAACCGAGTTCTGGTTTGCGTTTATTAAAGGGCGGGCAATCATCGGTATGATCGGTTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTAACGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATc < 2:416330/238‑1 (MQ=255) aaactggtttttGGTTTGGGTTGATTAAAGTTTCGGCAATCACTGGTTTGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATcc < 1:68573/227‑1 (MQ=255) aaaCCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTCTCGCACACCTCTGGCGCTACGGTGGTTTCTTTGCCCCCGGCTGGAA‑TTGGCTGATTTTTTCGCTGGCC‑GGCAATT‑TGTTTTCCCTCCGTGGGTCTGGGGCTGTTTGGGGTTA‑TGCC‑Gccggaaagcgtcgatcg > 1:120911/1‑223 (MQ=255) aaaCCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTGGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGC‑C‑GGGAAATATGTTTT‑CCTTTGGCGGGCTGGAGGTGGTTTGGGTTACTTCCGGCTG‑AGCGCGC‑GATCCg > 2:24623/1‑239 (MQ=255) aaaCCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGGA‑TGGGCTGGTTTTGTCGCTGG‑C‑GGGAATTATTTTTT‑CCTTCTGGGGGGTGGGGCGGTTTGGGGTTaacagcgctgaaatggcgggaccg > 1:787940/1‑216 (MQ=255) aaaCCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTTTGTTTT‑CCTTCGGCGGTCTTGGGCTGATTTGGGTTTCCGCC‑GCTGAAGCGCGC‑GATccc > 2:105074/1‑238 (MQ=255) aaaCCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCCCTGGCGCTACGGGGGTTTCTTCGCCACCCGCTGGAA‑TGGGCTGGTTTTTTCGCTGG‑CGGGTAATT‑TGTTTT‑CCTTTGGCGCTCTGGGGGGGATTGGGGGTACTTCC‑GCGGAAGCGCGC‑GATCCg > 1:356891/1‑239 (MQ=255) gTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGGAATTTTGTTTT‑CCTTTGGCCGGCTGGGGCTGCTTTGGGTTCACGCC‑CCGTAAACGCGC‑GATCCGGgcaaaa > 2:844673/1‑239 (MQ=255) tgtgtgttGCGTTTATTAAAGTGGTGGCAATCCGCGGTATGATCGGTTTTGGCCTGTGGCTACTGTTTTCTGGGCCCGGCGGCGAGAAAGCCAGTGTCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCTGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAg < 1:988049/232‑1 (MQ=255) tCTGGTTTGCCTTGATTAAGGTGCGGGCAATTATCGGTATGATCGGTTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAg < 2:1014170/238‑1 (MQ=255) gggTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑aaa < 2:24034/237‑1 (MQ=255) gCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑aaa < 2:620074/239‑1 (MQ=255) gCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑aaa < 2:397494/239‑1 (MQ=255) gCGTGGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCGTGTGGCTGGTGTTTGCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑aaa < 2:581435/239‑1 (MQ=255) cGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTTT‑CCTTCCGCGGTTTGGGGCTGGTTGGGATTACTGCC‑GCCGAAACGCCC‑GATCCGGGAAAAAGCATT‑CC‑caaa > 2:618514/1‑239 (MQ=255) tttaaatgtttGGCATTCGTCGGTTGGATTGGTTTTGGCCTGGGGGTGTCGTTTGCTGGTCCCGGCGGCGAGAAAGCCAGTATCGACAACCTTTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGt < 1:146332/229‑1 (MQ=255) tttAAAGTTCGGGCAATCATCGGGATGAGCGGCTTTGGCCTGTGGCTGCTGTTTTGTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGt < 1:787979/238‑1 (MQ=255) ttAAATTGCTGGCAATTATCGGTTTTATCGGTTTTGGCCTGGGGGTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTAGCGACAACCCCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTa < 1:521363/239‑1 (MQ=255) aGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATc < 2:158669/239‑1 (MQ=255) tcgggCAATCCTCGGTATGATCGGCTTTGGCCTGTGGCTGGTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAgg < 1:198279/236‑1 (MQ=255) gCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAgg < 2:815359/239‑1 (MQ=255) tGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGGCTGGAGCTGATTGGGGTTACTGCC‑GCTGAAAGGGCC‑GATCCGGAGAAAAGCATT‑CC‑CAAAACGGGAAATCacggg > 2:198279/1‑235 (MQ=255) tGGCAATCAGCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAggtg < 2:134741/239‑1 (MQ=255) gggCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAggtg < 2:317048/238‑1 (MQ=255) ggCAATCATCGGTATGATCGGCTTGGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAggtg < 2:194494/238‑1 (MQ=255) gTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGGTTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGTGCTGATTGGGGTTACTGCC‑GCTGAAGCGCGC‑GGTCCGGAAAAAAGCATT‑CC‑CAAAGCGGTAAAtacggggggggattgcac > 2:396433/1‑221 (MQ=255) tgcttgtgGCTGCTTTTTTTGGTTCTCGGGGGCGAGAAAGCCAGTGTCGCGACCCTCTGGCGCTGCGGTGGTTTCTACGCCACCGGCTGGAA‑TGGGCTGATTGTGTCGCTGG‑C‑GGTAAGTATGTTCT‑CCTTCGGCGGGCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGGGGTGTATCGCATCCTGCTGTTTTACAt < 1:515789/235‑1 (MQ=255) gtgtttttgttgtttttttCTTGGCCCGGGGGCGAGAAAGCCAGTATCGAACACCTTCGGCGCTCAGGTGGTTTCTTCGCCCCCGGCTGGAA‑TGGGCTTATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACAt < 1:586123/224‑1 (MQ=255) ggCCTGTGGCTGCTGTTTTCGGGTCCGGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTTCGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACAt < 2:483272/239‑1 (MQ=255) gtgGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTTTCGCTGG‑G‑GGTAATTTTTTTTT‑CCTTCGGCGGGCTGGGGCTGGTTGGGGTTACTGCC‑CCTGAAGCCCCC‑GGTCCGGCAAAAAACATT‑CCAAAAAGCGG‑AAATCAGGGGGGGGATCggcacccgccggtttaccaaggtt > 1:102075/1‑216 (MQ=255) tgGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGGAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTTGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAAACAGGGGGGGTATCGCATCCTGCTGTTTTACATCGGtt > 2:793891/1‑238 (MQ=255) ttcttttttttCGTCTCCGCGGCGAGAAACCCAGTATTGGTAACCTCTGCGGCGCCGGGGGTTTTCTCGCCCAGGGCTTGAA‑GGGGGGGAATTTGGCGCTGG‑G‑GGTAATTATGGTCT‑CCTTCGGGGGTCTGGATATGATTGGGATTACTGGC‑GATGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACtg < 1:615222/234‑1 (MQ=255) ctgTTTTCTGGTCGCGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACtggt < 2:195419/239‑1 (MQ=255) tttCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGGGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑CAAAGCGGTAAATCAGGGGGGGTATCGCATCCTGCTGGTTTACATCGGTTCACtggtgggt > 2:531637/1‑237 (MQ=255) cccgggggCGGGAAAGCCAGGTTCGCAAACCTTGGGCGCTACGGTGGTTTCTTCGCCACGGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTgg < 1:618514/236‑1 (MQ=255) cACGGGGGCGAGAAAGCCAGTATCGCCGTCCGCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTGTGTCGCTGG‑C‑GGTAATTACGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTgg < 1:24623/238‑1 (MQ=255) cACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTgg < 2:163456/238‑1 (MQ=255) aCGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGGAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGGAAAAAGCATTCCC‑AAAACGGGAAAACCAGGGGGGGATTCGAACCCT‑CCGGTTTACATCGGGTCACTGGGGGGTTTTCttgg > 2:19224/1‑235 (MQ=255) ggcggcGAGAAAGCCAGTTTCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGct < 2:255591/239‑1 (MQ=255) gcgAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTa < 2:970591/238‑1 (MQ=255) aaaGCCATTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCgt < 2:879170/238‑1 (MQ=255) tcaaCAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGGCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTg < 2:884946/236‑1 (MQ=255) aaCCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATc < 2:356891/239‑1 (MQ=255) gggggcTTCGGTGTTTTTTCTGCCCACGGCGGGAG‑TGGGCTGGTTTTGTCGGTGG‑C‑GGTAATTAGGTTCT‑CCTTCGGCGGTCTGGAGCGGATTGGGATTACTGCC‑GATGAAGCGCGA‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCAATGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAg < 1:268987/235‑1 (MQ=255) gggcggttgggttgttttgttgCCACCGGCTGGAA‑TGGGGCGATTTTGGCGTGGG‑C‑GGTAAGTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATGGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTTTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAg < 1:556218/218‑1 (MQ=255) tcGCCCCCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGAtt < 2:787940/239‑1 (MQ=255) gAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTgg < 2:206120/173‑1 (MQ=255) gAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAAtctc < 2:551598/238‑1 (MQ=255) cggtgttttgtgtgtg‑C‑GGTAATTACGTTCT‑CCGTCGGCGGTTCGGGTCTGATTGGGAATACCGCC‑GCTGAAGCGCGC‑GATCCGGCAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGGTTTACATCGGTTCACTGGTGGGTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCa < 1:472994/223‑1 (MQ=255) tGATTTTGTCGCTGG‑C‑GGTAATTAGGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAAc < 2:102075/239‑1 (MQ=255) gaatttGGCGGTGG‑C‑GGTAATTATGTTCT‑CCTTCCGCGGTCTGGAGCTGAATGGGATTACTGCC‑GGTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAAc < 2:447459/235‑1 (MQ=255) ttgtcccgtcggttatttATGTTTT‑CCTTCGGCGGTCTGGAGCTGTTTGGGATTCCTGTC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCGGGTGGTGTATCGCATCCTGCTGTTTTACATGGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGt < 1:820823/223‑1 (MQ=255) gTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GGTCCGGAAAAAAGCATT‑CC‑AAAAGCGGGAAATCAGGTGGTGCATCGGATCCTGCCGTTTTACATCGGTTCACTTGTGGGTTTACTGGTGCTCTAGCCGTGGGTGGAAGTGAAATCCCACCGCACCCCGTTTGTGAGGGTTTTTCATaaattcgcagccaaagggtgaa > 1:706233/1‑219 (MQ=255) cgggtaTTTTGTTCC‑CCTTCGGCGGGTTGGGGCTGGTTGGGATTACTGCC‑GGTGAAG‑GCGCGGAGGCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTTTAACCCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCTCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTgcg < 1:710678/234‑1 (MQ=255) atttttttCT‑CCTTCGGGGGTTTGGAGTTTATTGGGATTTCTGCC‑GATGAAGCGCGG‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGaa < 1:19224/233‑1 (MQ=255) tGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GCTCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGGGGTGTATCGCATCCTGCCGTTTTACATAGGTTCACTGGTGGTATGAATGGCGATCTATCCTCGGGTGGGAGGGAAATCCACTAGTAGACCGTTTGGGATGATTTTCCTTAATCTCGACAGCACAGGGGAAGCTACTgggcgagacttt > 1:803503/1‑231 (MQ=255) tccccgtccggggTCTGGAGCTTATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTc < 2:297861/228‑1 (MQ=255) ct‑cCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGGGGTGTATCGCATCCTGCTGTTTTACATCGGTTAACTGTTGGTTTTACTGGCGCTCTTTCCGGGGGGGGAAGGGAAATCCAACAGTAGCCCGTTTGTGATGCTTTTCCATAATCTCGCAACCAACGTGGTAGCTTTTCGGGTGAACtttcgca > 1:297861/1‑234 (MQ=255) t‑cCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTCAt < 2:365540/239‑1 (MQ=255) t‑cCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTAACTGGTGGCTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGGTTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTCAt > 2:860093/1‑239 (MQ=255) cTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGACAGAAGCATT‑CC‑AAAAGAGGTAAATCAGGTGGAGTATCGCATCCTGCTGTTTTACATCGGTTCCCTGGCGGTTTTGCTGGCGCTCTATCCGTGGGTCGAAGTGAAATCCAACAGTCTCACGTTTGTGAGGCTTTTCCCCAATCTCGCCCCCACCGAGGTAGCTTCAACGGTGCACTTctccatct > 1:134567/1‑232 (MQ=255) cTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGACGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGCCAGCAACGGGGTAGCTTCTGCGCTGGACTTCGTCAt > 2:973947/1‑237 (MQ=255) cTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGGTTGTGAGGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTCAt > 2:1020996/1‑237 (MQ=255) gcggTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACt < 1:923486/115‑1 (MQ=255) gcggTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACt > 2:923486/1‑115 (MQ=255) cggTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTCATTCTGGTa < 2:1024500/238‑1 (MQ=255) gTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAgg < 1:339455/75‑1 (MQ=255) gTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAgg > 2:339455/1‑75 (MQ=255) tGGAGCTGATTGGGATTACTGCC‑GGTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTCATTCTGGTAGCATCg < 2:469752/239‑1 (MQ=255) | TTAACCTGGTGAACGTGCGCTTATATGGCGAAACCGAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCACGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAA‑TGGGCTGATTTTGTCGCTGG‑C‑GGTAATTATGTTCT‑CCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCC‑GCTGAAGCGCGC‑GATCCGGAAAAAAGCATT‑CC‑AAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCGGTTCACTGGTGGTTTTACTGGCGCTCTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGTGGTAGCTTCTGCGCTGAACTTCGTCATTCTGGTAGCATCG > NC_000913/602404‑602870 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |