| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,511,394 | T→C | 19.6% | intergenic (+69/+72) | ypeC → / ← mntH | DUF2502 family putative periplasmic protein/manganese/divalent cation transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,511,394 | 0 | T | C | 19.6% | 131.1 / 5.4 | 71 | intergenic (+69/+72) | ypeC/mntH | DUF2502 family putative periplasmic protein/manganese/divalent cation transporter |
| Reads supporting (aligned to +/- strand): ref base T (36/18); new base C (12/4); total (49/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCA > NC_000913/2511165‑2511631 | aTCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAAccc > 2:428326/1‑237 (MQ=255) tggaaatgatgggggggaaaaaacCCGTTGGTGCGTTCTAGAAAATGGCTCCCGCCGTGGCTGGGATAAGCGTAAAGCGTAGGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGGGACGATCATCGGGGAAAAGGCC‑GGGGT‑CA‑GGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAAcgcg < 2:674833/220‑1 (MQ=255) tCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CC‑TGGGACCCGCCC‑TTAAA‑CG‑CG‑CCCCCCAATGGGGCACAATGCCCGATACGACGCTAGGGCGACTTATCAGGCCTACAAACAGGCACCTTaaagag > 1:316537/1‑235 (MQ=255) aGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGG‑CA‑TGGGGCCCGCCA‑TTAAA‑CG‑CA‑CCCGCCAAAGGCGCACAATGCCTGAGGCGACGCCAGTGGGTCTTATACGGCCCACAAACCCGCCCTTAAACGCGTAgggggggaa > 1:242963/1‑236 (MQ=255) gTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑GCCGCCACTGGCGCACAATGCCGGATCCGACCCTAGGCGGCCTTATACGGCCTACAAACCGGCCCTTTAACCCGAAgccgccgaaa > 1:155803/1‑230 (MQ=255) cgcAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCCCAATGCCTGATGCGCCGCCAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACCCGTAGGGCGGGTAAGACg > 2:482409/1‑239 (MQ=255) cgcAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCCCTTTAACGCGTAGGGCGGATAAGGCg > 2:209638/1‑239 (MQ=255) cgcAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGAGTCTTATCAGGCCTCCAAACCGGCCCTTTAACGCGAAGGGCGGATAAGGCg > 2:378887/1‑239 (MQ=255) cgcAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CA‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGCCTTATCAGGCCTACAAACCGGCCCTTTAACGCGCAGGGCGGTTAAgggt > 2:610745/1‑237 (MQ=255) gTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCGGATGCGACGCTAGTGCGTCTTATCAGGCCTCAAACCCGGCTCTTTAAAGCGTCGGCCGGGTAAGGCGTTTAcgccg > 2:40209/1‑238 (MQ=255) gTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGTGCACAATGCCTGATGCGACCCTAGTGCGCCTTATCAGGCCTCCAAACCGGCCCTTTACCCCGAAGGGCGGGTAAGGGGGTTAcccccaaccccccaa > 1:462250/1‑228 (MQ=255) gTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGCCGCGATCGTGACGATCATCCCGGAAACGGCC‑GGGGC‑CA‑TGGGCACCGCCA‑TTCAC‑CG‑CG‑CCCGCCAATGGGCCACAATGCCTGATGCGACCCTAGTGCGTCTTATCAGGCCTCCAAACCCGCCCTTTAACGCCACGGTCGGGTAAGACGTTTaacctcccacccccaa > 1:269676/1‑224 (MQ=255) gCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGCCGCAAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGCGGGGCGGGTAAGGCGTTTACGCCGCATCCGCCAATAGTGCCACAt > 2:609112/1‑238 (MQ=255) accaccGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGGGCACAATGCCTGATGCGACGCCATTGCTGTTTATCAGGCCTCACAACCGGCCCTTTAACCCGTAGGGGCGCTAAGGGGTTTACCCCCCATCCCCCAAAAggccccaaaggcc > 1:825457/1‑227 (MQ=255) caccGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCCCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGGGCCAGATGCGAc > 2:893825/1‑238 (MQ=255) gcgtaaagcgtaTGAGCGTGGCTATCGTGAAGGCTGCCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGCGGAAAATGCCTGATGCGACGCTCGTGCGTCTCATCAGGCCTACAAACCGGCCCTTTAAGCCGTAGGGCGGATAAGGCGTTTACGCCGCACCCGCCCAAAGTGCCAGATGCGCCGCGCATTCAAcaccaaa > 1:159602/1‑232 (MQ=255) cgtaaagcgtaTGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACCCCGCATCCGCCAATAGTGCCAGATGGGACGCGCATTCAACTACAATcc > 2:828757/1‑239 (MQ=255) aagcgtaTGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGCTAAGGCGTTTACGCCGCATCCGCCAATAGGGCCAGATGCGACGCTCATTCAACTACAATCCCAg > 2:593546/1‑238 (MQ=255) aTGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCCCATTCAACTAAAATCCCAGCGCCGt > 2:255429/1‑238 (MQ=255) aTGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCCCTTTAACGCGGAGGGCGGATAAGGCGTTTACGCCGCATCCCCCAATAGTCCCAGATGAGCCGCTCATTCCACCACAACCCCaagcccgg > 1:783812/1‑231 (MQ=255) tGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGAGCCGTCCccacca > 2:515783/1‑239 (MQ=255) tGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCCCTTTAACGCGTAGGGCGGATAAGGCGGTTACGCCGCATCCGCCAATAGTGCCCGATGCGGCGCCCATTCAACTACAACCCCAGCCCCGTCCccccca > 1:535204/1‑239 (MQ=255) cgtcTATCGTGAAGGCTGGCACGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGAGTAGGACGGATAAGGCGTTTACGCCGAACCCGCCAATAGAGCCAGAGGCGCCGCTCATTCACTAACAAACCCAACCCCGCccccccaa > 1:966568/4‑235 (MQ=255) tttcggggagtgggcgccccgcGTGACGATACGTGCGGAAAGGGCC‑GGGGTGCT‑TGGCCCCCGCCA‑TGAAG‑CG‑CG‑CACGCAAATGGGGCACAGTGCCTGATGCGACGCTAGTGCGTCCTACCGGGCCTACAACCCGGCCCTTTAACGCGTAGGGCGGATAAGCCGTTTCCGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACcaaca < 1:669973/218‑1 (MQ=255) tCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTa > 2:69291/1‑141 (MQ=255) aaGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCCCCACAAACCAGata > 2:789051/1‑239 (MQ=255) ggCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGAAGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCAACCACCATTCAACTACAATACCAGCGCCGTCCCCACCAACAACCAgcaatc > 2:476239/1‑234 (MQ=255) cggctgtgtcgtaccagatcgctggAAAAGGGC‑GGGGG‑CG‑TGGGGCCCCGCA‑TTAAA‑CGCCG‑TCGACCAATGGAGCCAAATCCCTGATGGGCCGGTAGGGCGTCTTACCAGGCCTACAAACCGCCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAg < 1:255429/216‑1 (MQ=255) gcgcGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGAt > 2:598316/1‑144 (MQ=255) gcgcGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGCAATTCAgc > 2:352024/1‑238 (MQ=255) aTCGAGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGGGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACACCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTTAACTACAACCCCAGCCCCGACCCCACAACAAACCAGaaatcaaaaccaaag > 1:964733/1‑228 (MQ=255) tCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCACCAACCAGCTATTCAGCGCCCCg > 2:83015/1‑238 (MQ=255) gccactccggggaaaGGTC‑GGGGG‑GG‑TGGGCGCCCCCAGTTAAACCG‑GG‑TCCCCCAATGGAGCAATAGGCCTCAAGCGAGGCTTGTGGGTTTTATCAGGCCAACAAACCGGCTTTTTAACGCGGAGGGCGAAAAAGGCGTTTACGCCGCCTCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGc < 1:721545/227‑1 (MQ=255) gcgcagcgggAAAGGGGG‑GGGGT‑CAGGGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGcac < 2:94301/231‑1 (MQ=255) cccgccgctGAAAAGGCCGGGGGT‑CG‑TGGCCCCCCCCT‑TTAAC‑CC‑CC‑TCCCCAAAGGGAGCCAAATGCCTGGTGCGCCGCTATGGCGGCTTATCAGGCCTACAAACCGGCCTGTAAAGGCTTAGGGCGGATAAGGCGTTCACCCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGcac < 1:378887/234‑1 (MQ=255) ccggggAAAGGGCG‑GGGGT‑TC‑TGGGCCCCCCCC‑TTAAA‑AC‑CGCCCCCCCAATGGAGCAAAATGCCTGATGCGGCGCTAGGGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACcaca < 1:893825/235‑1 (MQ=255) gcggcaagagggcgggtgagaggggCCCCGCCA‑ATAAC‑CG‑CG‑TCAGGCAATGGAGCCAAACGCCGGGAGCGACGGTAGTGCGTATGACCAGGCCTAAAACCCGGCCCTTTAACGCGTAGGGCGGATAAGGCGTTTCCGCCGCATCCGCCAATAGGGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACcaca < 1:482409/216‑1 (MQ=255) ggtccacggccACCGCCT‑ATAAG‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCTTCTTAACAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCctgtc < 2:316537/228‑1 (MQ=255) ccGACA‑TTAAA‑CG‑GG‑TCCGCCAATGGATCACAATGCCGGAGTCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGtt < 2:640357/239‑1 (MQ=255) cGCCA‑TTAAA‑CG‑CT‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTCTCAGGCCTACAAACCGGCTCTTTAACGCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCTACGCTCATTCAACTCCAATCCCAGCGCCGCCCCCCCCAACACCCCAACATTCACCCCCCCAGCCAGCCCCCCAATAACCCACCCTGTCGGTTTTCCCCGttt > 1:486632/1‑239 (MQ=255) cA‑TTAAA‑CG‑CG‑GCCGACAATGGAGCAAAATGCCTGATGGGACGTTAGTGCGTCTTATCAGGCCTAAAAACCGGCTCTTTAACGGGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCt < 2:783812/239‑1 (MQ=255) cg‑cg‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCATATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGCCGGTTTTACCCGGTTGCTGTTcccc > 2:699762/1‑239 (MQ=255) cg‑cg‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGc > 2:871534/1‑210 (MQ=255) g‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAg > 2:1003611/1‑238 (MQ=255) g‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATACTCAGCGCCACCCCCAGCCCCACAAACACCCAGCATCGCTCTTTTACCAGTTTGCTGTTCACCaa > 1:824403/1‑237 (MQ=39) tCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATAtt < 2:356409/174‑1 (MQ=255) tCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATAtt > 1:356409/1‑174 (MQ=255) tGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTCCAATCCCAGCGCCGTCCCCACCACCAACCAGATATTCAGCGCCCCGACCAGCCCCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTTGTCACCAAATCGCCCacaaaatt > 1:934013/1‑227 (MQ=255) tGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGGTTTACGCGTTTGCTGTTCACCAGATCGCCCATACACtt > 2:938677/1‑234 (MQ=255) tGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGCCTGTTTTACGCGTTTGCTGTTCACCAAATctgtcccttataaacat > 2:483688/1‑222 (MQ=255) tGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGAGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGAGTTTGCTGTTCACCAAATAGCCCATCACCTTgacga > 1:583513/1‑235 (MQ=255) tGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGt > 2:917029/1‑239 (MQ=255) ccggtcctggttggctttacccggCCAACAACCCGGTCATTTAACGGGTAGGGGGGACAGGGCTTTCTCCCAGCCCCCGCCAATGGGGCCAAATGCGGCTATCATTCAACAACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGGGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCGCCAGATCGCCCATCAACTTGCTGTCACTGGTg < 1:515783/217‑1 (MQ=255) cGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAACACCACAATCCCCCAGCCTGTCTGTTTTCCGCGTTTTGTGTTCACCATAACGCCCATCAACTTCCTGTCACTGGTGaaaa > 1:643085/1‑239 (MQ=255) tAGTGCGTCTTAACAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCGGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATca < 2:462250/239‑1 (MQ=255) tAGGGCGTTTTAACAGGCCTAAAAACCGGCTCTGTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATc < 2:825457/238‑1 (MQ=255) aGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCACACCCACGACCAGCACCCCAATCACCCAACCTGCCTGTTTTACGCTTTTGCTGTTCACCAATACCCCCCTCAACTTTCTCTCACTGGGAaaaaccc > 1:565038/1‑235 (MQ=255) tCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGCCTGTTTTACGCGTTGGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCACCAGTgg > 2:962074/1‑239 (MQ=255) tagcAGGCCAAAAAACCGGCTCTTTAACGCGTAGGGCGGATAGGGCTTTTCCGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAAc < 2:484773/236‑1 (MQ=255) tATCAGGCCTACAACCCGGCTCTTTAACGCGTAGGGGGGATAAGGCGTTTACCCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAAc < 2:416271/239‑1 (MQ=255) tATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCt > 1:460700/1‑185 (MQ=255) tATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCt < 2:460700/185‑1 (MQ=255) tATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCCCTGGTGAAAATc > 1:876885/1‑228 (MQ=255) tATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATc < 2:876885/228‑1 (MQ=255) tCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACTCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAAAACGCCCAACACCCTGCCTGCACCGGTGAAAATCAGCCCTGGaaac > 1:411001/1‑236 (MQ=255) cAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGGGGAACCAGCGCCaga > 2:830883/1‑238 (MQ=255) aCCGGCTCTTTAACGTGTAGGGCGGATAAGGCGTTTCGTCCGCACCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACcaa < 1:183977/105‑1 (MQ=255) cGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATGGCCCCTCAACTTCCTGTCACTGGTGCAAATCACCAGGGGAACCAgacccaagacgata > 1:613611/1‑226 (MQ=255) cGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAAt < 2:120468/211‑1 (MQ=255) cGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAAt > 1:120468/1‑211 (MQ=255) ggCTCTTTAACGCGTAGGGCGGATAGGGCGTTGACGCCGCATCCGACAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATAc < 2:159602/239‑1 (MQ=255) tctTAAACGCGGAGGGCGGATAAGGCGTTGACGCCGCCACCGCCAATAGGGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCa < 2:934013/238‑1 (MQ=255) | ATCGCAATTATGAGTGGCGCAAAAACCGTTGGTGGCGTCATGATAATGGCTACCACCGTGGCTGGGATAAGCGTAAAGCGTATGAGCGTGGCTATCGTGAAGGCTGGCGCGATCGTGACGATCATCGCGGAAAAGGCC‑GGGGT‑CA‑TGGGCACCGCCA‑TTAAA‑CG‑CG‑TCCGCCAATGGAGCACAATGCCTGATGCGACGCTAGTGCGTCTTATCAGGCCTACAAACCGGCTCTTTAACGCGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAATAGTGCCAGATGCGACGCTCATTCAACTACAATCCCAGCGCCGTCCCCACCAACAACCAGATATTCAGCGCCACGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCA > NC_000913/2511165‑2511631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |