| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 278,652 | G→T | 6.1% | L51M (CTG→ATG) | afuC ← | CP4‑6 prophage, putative ferric transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 278,652 | 0 | G | T | 6.1% | 204.4 / 4.5 | 71 | L51M (CTG→ATG) | afuC | CP4‑6 prophage, putative ferric transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (39/26); new base T (2/2); total (43/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.72e-01 | |||||||||||
TCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTACGTGATTCACCGATCAGCCAGTCAAAGAT > NC_000913/278423‑278876 | tCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCCTACAGCTATCG‑CGCTGCTGACTAGAGCGATGGGTGACGTCTTCGCCATCAATCAAAATTTGCCCTTCGCTCGGTTTTTCCACCCCGGCAACCCAGCGCaaaaa > 1:668012/1‑238 (MQ=255)tCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAAt > 2:34858/1‑239 (MQ=255) cactcccAGCGTCTCTTTTACTCGTGCTTTCATCCTGGCGCGCGGTACGCCGAGCATTTTCAGTCCATAGCCGACAATCGCTCCCAGCGACAGATGCGGGAACAGGGCATAGGACTGAAACAACATACAGATGTCG‑CGCTGCTGAATAGAGCGGTGGGTGACGTCTTCGCCACCAATGAAAAGTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGc < 1:4998/234‑1 (MQ=255) cGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCCTACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCgg > 2:365950/1‑239 (MQ=255) ctTTGACGCGGGCTTTAAGCGCTACGCGCCGAAGGCCGAGCATTTTCAGGTCATAACCGTCATTCTCACCCCGCGACCGATGCGGGAACACGGCATAGGACTGAAACACCATACAGATATCG‑CGTTGCTGAATACAGCGTTGGGTGACGCCTTCGCCACAACAGAATTGATGCCCTTGCGTGGGCTTTTCCGTCCTGGCTAACAGGCGAAAAAAAGGGTGTTTGCCGCAGTC‑GACggga > 1:845906/1‑238 (MQ=255) ggCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCACACTAGTGGTTTTGCCGCAGCCGGCCGGGCCGagcagc > 2:577003/1‑238 (MQ=255) ctGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGCGAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTg > 1:989463/1‑238 (MQ=255) cgcgcgGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAAAAGGGGTTTTGCCGCAGCCGGACGGGCCGAGCCGCGTCACCATTTGccc > 2:422910/1‑238 (MQ=255) cgcgcgGTACGCCGAGCA‑TTTCAGGCCATAACCGACATTCTCTCCCAGCAACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTGTTTCCAGCCAGGCAACAAGCCGCAAAATAGTGGTTTTGCCGCAGCCGGCCGGGCCGaccaggccccccattgtcc > 1:805537/1‑222 (MQ=255) gCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTTCCGACGCCGGACGGGCCGAGCAGGGTCACCATTTGCCCCTGCGGGATgt > 2:480369/1‑238 (MQ=255) gCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAgg > 2:178905/1‑239 (MQ=255) tttCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGAc < 2:842812/193‑1 (MQ=255) tttCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGAc > 1:842812/1‑193 (MQ=255) tacggCCAAAACCCACCTCCTCTCCCAGCAAAATATGGGGGAACAGGGCATAGGACTGAAACCCCATACAGATAGCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCATGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGata < 1:877246/236‑1 (MQ=255) tCAGGCCATAACCTACATCCCCCCCCAGCGAAATAGGCGGGAACAGGGCATAGGACTGAAACACCATCCAGATAGCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGata < 1:786723/239‑1 (MQ=255) ggCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCATGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGGGCAGCGTCACCATTTGCCCCTGCGGGATGGGGAGGTTGATATTg > 2:877246/1‑239 (MQ=255) ggCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCATGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGata > 2:470621/1‑236 (MQ=255) ggCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCATGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGata < 1:470621/236‑1 (MQ=255) gCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGCTAtttt > 2:745621/1‑237 (MQ=255) gttagatgtgtataaggaacagACATTTGCGGGAAAAGGGCATAGGTCTTAAACCCCATACAGTTATCG‑CGCTGTTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt < 1:203730/218‑1 (MQ=255) gtcATATGCGGGAACAGGGCATGGGACTGAAACACCATTAAGTTTGCG‑GGCTTCTGAATAGAGGGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCg < 1:422910/237‑1 (MQ=255) gACATATGCGGGAACAGGGCATAGGACTGAAACGCCATACAGATATCG‑CGCTGCGGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCaaa < 2:625990/236‑1 (MQ=255) aaCAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGGGAGGTTGATATTGTCGATTACCGGATTAcctgactcttttacacatctccg > 2:203730/1‑217 (MQ=255) aGGGCATAGGACTGAAACCCCATACAGATATCG‑CGCTGCTGGATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTgcg < 2:552521/239‑1 (MQ=255) ggCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTgcgcg > 2:728385/1‑238 (MQ=255) ggCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGGGCa > 2:467910/1‑239 (MQ=255) ggCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCa > 2:479573/1‑239 (MQ=255) cATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCGTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGAt < 2:112240/199‑1 (MQ=255) gAAACCCCATACAGA‑GTCGCCGCGGGTTAATAGAGCGATGGGTTACGGCTTCGCCATCAATGAAAATTTGCCCTGCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATTGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGaaa < 1:365950/239‑1 (MQ=255) aaaCACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTTCGGGATGAGTCGGGTGAGATTGTCGCTAACGCACTTATGGCCAAATCCCTTTGGCGCGTTGTCCAGTTCAACTAAAt > 1:146546/1‑239 (MQ=255) cctccgcatttCG‑CGCTGCTGAATTGAGGGATGGGTTACGTCTCCGCCATCAATGAAAATTGGCCCTTCGCTCGGTTTTTCCAGCCTGGCAACCAGGCGCAAAATAGTGGTTTTGGCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCt < 1:471932/229‑1 (MQ=255) cATACAGTTATCG‑CGTTTTTGAATAGGGCTATGGGTTACCTCTTCCCCATCAATGAAAATTTGCCCTTCCCTCGGTTGTCCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGGGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCt < 1:178905/239‑1 (MQ=255) cATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTATTGACGTTGCGCAGTTCAACGAAAtttt > 2:667821/1‑236 (MQ=255) cATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAAtttt > 2:988052/1‑236 (MQ=255) tttttaaaagggaagttgcggAATGGGGGGATGGGTGACGTCTTCCCCATCAATGAAAATTTGCCCTTCGCTGGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCt < 1:855883/223‑1 (MQ=255) tACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTTGGCAGTTCAACGAAATTTTTCTGa > 2:362612/1‑239 (MQ=255) tACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGAATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGa > 2:545665/1‑239 (MQ=255) aCAGATATCG‑CGTGGTGGAATAGGGCGATGGGTGACGTCTTCGCCATAAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAg < 1:362612/239‑1 (MQ=255) atatCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTctt > 2:720010/1‑237 (MQ=255) tCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTTTGGGTCATAGt > 2:225324/1‑239 (MQ=255) g‑cgcTGCTGAATAGAGCGATGGGTGACGTCTTAGCAATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCCAGCGCAAAATAGAGGTTTTGCAGCAGCCGGACGGGCCGCGCAGGGTCACCATTTACCCCTGCGGGATGTGGAGGTCTATACTGTCGATTACCGTTTTACCGCCAGCGCGTGTAGGGACGTTGCGCCGCTCGAGCTAAATTTTCTGATGCAGAGTgc > 1:615946/1‑239 (MQ=255) cgcTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTgc > 2:840779/1‑238 (MQ=255) cgcTGCTGAATAGAGCGATGGGAGACGTCTTCGCCATCAATGACAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGGGGTTTTGCCGCAGCCGGACGGGCCGAGCAGAGTCACCATTTGCCCCTTCGGGATGGGGCGGTTGGTATTGTGGATTACCGTATTACTGCCAAATTGTTTAGTGACGTTGAGCTGTTCAACCAAAatttttttggtcacagggc > 1:676476/1‑224 (MQ=255) tcttctgAATAGAGCGATGGGTGACGTCTTCGCCATAAATGAAAATTTGCCCTGCGCCCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGAAGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTgcgc < 1:577003/235‑1 (MQ=255) gctgctGAATAGAGCGAGGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTgcg < 2:805537/238‑1 (MQ=255) agCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAACTAGTGGTTTTGCCGCAGCCGGACGGGCCGATCAGCGTCACCATTTGCCCCTGCGGGCTTGTGAGGTTGATATTTTCGATTCCCGCTTTACTGCCAAATCGTTTAGTGACGTTGCCCAGTTAACCGAATTTTTTCTGAGTCATAGTGCGATCCATTAca > 1:253427/1‑235 (MQ=255) agCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAgg > 2:855883/1‑222 (MQ=255) agCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGG‑TTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTAt > 1:751036/1‑164 (MQ=255) agCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCCCGG‑TTGTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTAt < 2:751036/164‑1 (MQ=255) cGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCCCCCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGCTATTGTCGGTTACCGTATTACTGCCAAATCGTTTAGTGACGTTTCGCAGTTCAACGAAATTTTTCTGCGTccacatgcgcccccttacccccgg > 1:675673/1‑216 (MQ=255) cGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGCGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGAATTACTGCCAAATCGTTTAGTGCGGTTGCGCAGTTCAACGAAATTTTTCTGAGCAATAGTGCGTTCCATTACGCCTgg > 2:453770/1‑239 (MQ=255) tGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGTTGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGATTCATAGTGGGCTCCATTACGCTTGGttt > 2:788967/1‑239 (MQ=255) tGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGCCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGCAACCATTTGCCCCTGCGGGATGGTGAGGTTGGACTTGGCGATTACCGAATTACTGCCAAATCGTTTAGGGACGTTGGGCAGGTCAACGAAATTTTTCCGAGTCATAGAGCGCACCTTTActcacgggtt > 1:632896/1‑230 (MQ=255) gTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTg > 2:238574/1‑239 (MQ=255) aCGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTCCCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCCACGAAATTTTTCTGAGTCATAGGGCGCCCCATTAGGCCTGGTTTTTGGCt > 2:932662/1‑239 (MQ=255) aCGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTATTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGTTCCATTACGCCTGGTTTTTGGCt > 2:873084/1‑239 (MQ=255) ttcccttCAATGAAAATTTGCCCTTGCCCCGGTTTTCCCAGCCCGGCAACCAGGCGCAAAATAGGGGTTTGGCCGCTGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGaa < 1:728385/233‑1 (MQ=255) cGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGGCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTCCTGCCAAATCGTTTAGGGACGTTGCGCAGTTAAACGAAATTTTTCTGAGGCATAGTGGGGTCCATAACCCCTGGTTTTTTGCTTTTGAAc > 1:755791/1‑239 (MQ=255) cataaggtaaaaTTTGCCCTTCGGCCGGTTTTCCCCGCCCGGCAACCAGGCGAATAATATGGGTTTTGCCGCAGCCGGAGGGGCCGAGCGGGGTCACCATTTGCCCCTGCTGGATGGTGAGGTTGATATTGTCGATTACCGTAGTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACggg < 1:667821/231‑1 (MQ=255) caacAATGAAAATTTGCCCTTCGCTCGGTTTTCCCCGCCCGGCAACCAGGCGCAAAATGGTGGTTTTGCCGCAGCCGGAAGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACggg < 1:614957/236‑1 (MQ=255) tCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAg > 2:902991/1‑239 (MQ=255) tGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTAc > 2:691674/1‑239 (MQ=255) gAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCTCCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTACg < 2:989463/239‑1 (MQ=255) aaTTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCt < 1:452908/182‑1 (MQ=255) aaTTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCt > 2:452908/1‑182 (MQ=255) tttGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCTTTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAAttttt > 1:906257/1‑178 (MQ=255) tttGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCTTTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAAttttt < 2:906257/178‑1 (MQ=255) ttgtcccTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGTGCCGAGCAGCGTCCCCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTACGTGAtt < 2:435589/235‑1 (MQ=255) ttGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTACGTGATTc < 1:720010/239‑1 (MQ=255) ccgCCCGGCAACCAGGGGCAAAATAGTGTTTTTGCCGCGGCCGGACGGGCCGGGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTACGTGATTCACCGATCAGCCAGTCAAAGAt < 1:231084/237‑1 (MQ=255) cAACCAGGCGCAAAAGAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCCCCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTACGTGATTCACCGATCAGCCAGTCa < 2:703853/226‑1 (MQ=255) | TCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGACATATGCGGGAACAGGGCATAGGACTGAAACACCATACAGATATCG‑CGCTGCTGAATAGAGCGATGGGTGACGTCTTCGCCATCAATGAAAATTTGCCCTTCGCTCGGTTTTTCCAGCCCGGCAACCAGGCGCAAAATAGTGGTTTTGCCGCAGCCGGACGGGCCGAGCAGCGTCACCATTTGCCCCTGCGGGATGGTGAGGTTGATATTGTCGATTACCGTATTACTGCCAAATCGTTTAGTGACGTTGCGCAGTTCAACGAAATTTTTCTGAGTCATAGTGCGCTCCATTACGCCTGGTTTTTGGCTTTTGAACGGGAGGTACGTGATTCACCGATCAGCCAGTCAAAGAT > NC_000913/278423‑278876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |