| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,606,903 | A→G | 26.7% | S267P (TCC→CCC) | rsmC ← | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,606,903 | 0 | A | G | 26.7% | 94.4 / 7.1 | 58 | S267P (TCC→CCC) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (9/32); new base G (14/3); total (23/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.16e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACGTC > NC_000913/4606665‑4607132 | gaTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCCTCGTGGAACGGCGGGTTGga > 2:69892/1‑239 (MQ=255) aatttAACCTTTCTTCCCCGGGGGGGGTCTAAGGGCGGGATCCCCCTTGAAGCGGCCTGTTGGCGCGATCCCTTCGTGGAAGCCAAATGTCTCATCCAGCCCGGCCGGATAAGGCAGGAAGGCGGTCGCTAAAAGTCGCAGCTGGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 1:195090/235‑1 (MQ=255) cTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTTCAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCCGGCTGGTTTTCCTCCCAACGGGGAACGGGGGCGTGGGgatgtgcctt > 1:898359/1‑233 (MQ=255) tcttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCGCCATCCCGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGgatgagtcaatca > 2:59990/1‑231 (MQ=255) cttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGACCGGCGGGTTGGGGAGTAT‑Catattca > 2:608157/1‑236 (MQ=255) cccgctgtggggTCATAATGGCGCGATCCCCCTTGAAGCCCCCTGTTTGCCCGACCACTTCGGGGAAGCCAAATGCCTCATCCAGCCCGTCCGGATAAGGCAGGAAGGCGTCCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCaaaa < 1:967400/230‑1 (MQ=255) tttAATGGCGCGTTACCCCTTTAAGCGCCCGTTTTGCGGGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCTTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCAcc < 1:98782/236‑1 (MQ=255) taTAATGGGGCGATACTCCTTGAAGCGCCCTGTTTGCGCGGTCCCTTCGGGGAAGCCAAAGGTCTAACCCAGCACGTCCGGATAAGGCAGGAAGGCGGTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCAcc < 1:370407/237‑1 (MQ=255) aTAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCAACGGGGAACGGCGGGGTGGGGGAGATACTTATCaaaaaaacattcacccc > 1:168104/1‑226 (MQ=255) cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGAGTTTGCGCCCCATCCAGGCTGGTTTGCATCCCCTCGGGGAACGCCGGGGTGGGGGTGAT‑CAGATCaaaaacacacttcccccccggaaag > 1:987714/1‑218 (MQ=255) accccTTGAAGCCCCCTGTTTGCGCGATCGCTTCGGGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTg < 2:999406/236‑1 (MQ=255) ccccTTGAAGCGCCCTGTTTGCGCGATCACTTCGGGGAAGCCAAATGTCTCATCCAGCCCGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGc < 2:898080/237‑1 (MQ=255) tggaccgcctcttttGCGCCATCCCTTCGTGGAACCCAAATTTCTCATCCAGCACGCCCGGATATGGATGGAAGGCGTTCGCGACAATTCCCAGCTCGCCGGCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCGCCTCGGAAAAG‑ACGTTGC‑TGGCa < 1:377598/227‑1 (MQ=255) aaGCGCCCTGTTTGCGGGTTCACTTCGGGGAACGCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATGCGCAGCTCGCCGCCGCTATTAAGATGACGCCCCGCACCGCGAATCAGGGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCaaa < 1:220485/239‑1 (MQ=255) cccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCAACCCATCGTGGAACGGCGGGTTGGAGATGAT‑CACATCACAAC‑GG‑CCTTTCACCCCGGGAAAG‑ACGGTGT‑TGGCcaaaaac > 2:953450/1‑234 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCCCCGCGAATCAGCGTTTGCCCCGCATCCAGGCTGGTTTGCATCCCATCGTGGACCGGCGGGTGTGGGATGAT‑TATTTCAACAA‑GACCCTTCCCCCCCGGaaaaaaggtgccgggaaaaacat > 1:1016778/1‑219 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGAT‑CCTATCCAAAA‑GA‑CCTTTCCCCCCGGGAAAG‑ACGTTGC‑TGGCAAAAAATTc > 2:254971/1‑239 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGCTGGAGATGAT‑CATTTCAAAAC‑GA‑CACTTTACCCCGGGAAAA‑ACGATGC‑TGGCAAAGACCTc > 2:495453/1‑239 (MQ=255) tttttgggggttaccttgggggcaGCCAAAGGTCTCATCCAGCACTTCCGGATAAGGCGGGAAGGCGTTCGCTCCGATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑c < 1:528439/216‑1 (MQ=255) tttttGGGCGATTCCTTTGGGAAGGCAAAATGTTTCAGCCAGCACGCCCGGAAAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑c < 1:648191/237‑1 (MQ=255) aTCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATTAT‑CATTTCACAAC‑GA‑CCTTTTCCCCCGGAAAAA‑ACGTTGC‑TGGGAAAGACTTAC‑CCTTCC‑acac > 2:388093/1‑238 (MQ=255) cACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag > 2:416620/1‑169 (MQ=255) cACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 1:416620/169‑1 (MQ=255) tggTGGAAGCCAAATTTCCAATCCACGCCGTCCGGATAAGGAAGGAAGGGGTTCGCTGCAATTCGCAGTCCCCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGc < 2:748183/237‑1 (MQ=255) tGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGCTTGCATCCCATCGTGGAACGGCGGGGTGGGGCGGTT‑ACTATCAAAAC‑CA‑CCCTTCACCCCCGACACA‑ACGCTGCGTGGCAAA‑ACCTCACCCCTCA‑AAACCCTTGGcgc > 1:956637/1‑237 (MQ=255) aaaTGTCTCAGCCAGCACGGCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTg < 2:701680/239‑1 (MQ=255) aaTGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGGTGAT‑CATACCAAAAA‑CA‑CCCTTCTACTCGGAAAAG‑AAGTTGA‑TGGGAAAGACTTCA‑ACCTCA‑ACAACggcgaccgccccagtagg > 1:844909/1‑222 (MQ=255) tcATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGTGTGGGCGTGAA‑CCTATTAAAAA‑AACCCTTCCACCCCGAAAAAG‑A‑GTGTC‑GCGCACAAACCTCA‑CCCTCC‑ACACCCATGGCGGCaaaggggggcgggcg > 1:864438/1‑226 (MQ=255) tCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCt < 2:980437/172‑1 (MQ=255) gcccGTCCGGATAAGGCAGGAATGCGTTCGCTACAATTCCGATCCAGCCGCCGCTATTAAGATGCCCCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCt < 2:671176/236‑1 (MQ=255) cACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGAT‑TCTATCAAAAC‑GC‑CCTTTCACCTCGGGAAAG‑ACGTTGC‑TGGCAAAAACTTCA‑CCTTCA‑AAACCCTTGGGCGCAAAGGATGCGCGGCTGGGTTCt > 2:114369/1‑238 (MQ=255) ttcggaaagggcgaggaGGCGGTCGCAACAATTCGTACGCCGCCGCCGCTATTAAGATGACGTACCGCCCCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCAATCGAGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGGTGC‑TGGCAAAGACTTCA‑CCTGCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgc < 1:608157/223‑1 (MQ=255) ccGGATAAGGCAGGAAGGCTTTCCCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgcc < 2:168104/239‑1 (MQ=255) aGGCAGGAAGGGGTTCGCTACAATTCGAAGCCCCCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCa‑g < 2:924349/239‑1 (MQ=255) ggCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGAT‑CGATTCAAAACACA‑CTTTCCACCT‑GGAAAAGAAGGTTGC‑T‑GCGAAAACTTCC‑CCTTCC‑ACACCACTGGCCGCCAGAGTGGGGCgggtggccatcaccccccgggcaag > 1:306598/1‑221 (MQ=255) gAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGGTGC‑TGGCAAAGACTTCA‑CCTTCA‑AAACCGTTGGCCGCAAGTGTTGCGCGGCTGGGTTTTACCGCCCGGGCC‑GAGACa > 2:207327/1‑238 (MQ=255) ggCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGAGGAT‑CCTCTCAAAAA‑GA‑CCCTTCAACCCCGAAAAA‑AAGTTGG‑TGGCAAAGACTTCA‑ACTCCA‑AAACCCTTGTCCGCACAGGATTCGCGGCGGGGTTCTCCCCCCcgggggacgaccaccc > 1:668236/1‑227 (MQ=255) cggtCGCTACAATTCGCAGCCCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGca < 2:440127/235‑1 (MQ=255) cGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTc < 2:713659/172‑1 (MQ=255) cGTTCCCTAAAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGca < 2:956637/238‑1 (MQ=255) ttCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGCAAAG‑ACGTTGC‑TGGGAAAGACTTCC‑ACCTCA‑ACACCATTGGCCGCAAGGGTTTGCCGGCTGGCCTCTACCCCCGGGGCA‑GAGACaacccgaaa > 1:826954/1‑231 (MQ=255) gCTACAATTCGCCGCTGCCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGt < 2:826954/239‑1 (MQ=255) tcccgccccgcccCCCGAAGCACGGTTGGCGCCGCAGCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATAACAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGCCTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAgg < 1:114369/235‑1 (MQ=255) aCGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGAGATGAT‑CATATCAAAAA‑GA‑CCTTTCACCCCGGAAAAG‑ACGTTGC‑TGGCCAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGGGTTGCGCGGCGGGCTTCTACCGCCCGGGCA‑AAGAAACCGCCC‑AAAGGGAGACGAAGTTTTGGCGAATGGCGGGCGAAGGCaa > 1:225453/1‑239 (MQ=255) cgAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGATGAT‑CATATCCAAAC‑GA‑CCTTTCACCTCCGGAAAG‑ACGTTGC‑TTGCAAAGAATTCA‑CCTTCACCCCCCTTTGCCCGCAAGGGTT‑TGCGGCTGGCTTCTAACCACCGGGCA‑GGGGCAACGCAC‑AAGGGGGAGCGAGATTTTGGCGAACAGCGGGCaaaaaacaccgaaaaaaaccc > 1:596915/1‑221 (MQ=255) gAACCAGGGTTGGCGCCGCATCCGGGCTGGTTTGCACCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGcc < 2:987714/238‑1 (MQ=255) ggTTTGCGCCTCAACCGGGCTGGGTTGCCTCCCATCGTGGACCGGGGGGTGGGGGATGGA‑CATATCAAAAC‑GG‑CCTTTCCCCTGGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTCCA‑ACACCGTGGGCCGCAAGTGTTGCGCGGCTGGCTTCTCCCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCcac < 1:897351/238‑1 (MQ=255) cGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAA‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑AAACCGTTGGCCGCAAGGGTTGCGCGGCTGGCTTCTACCGCCCGGGCA‑GAGACATCGCAC‑AAGGGGGGACGAATTTTCGGCGAATGGCGCGCCAAGGCAACTTAAAgaaacccccgccccc > 2:756928/1‑225 (MQ=255) tgccccgctCCGGGGTGGTTTGCATCCAAGCGTGGAAGGGGGGGTTGGGGATGAT‑AAAATCAAAAC‑GA‑CCTTTCCCCTCGGAAAAG‑ACGTGGC‑GGGCAAAGCCTTCC‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATTGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg < 1:388093/231‑1 (MQ=255) gcgcCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑TG‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg < 2:306598/239‑1 (MQ=255) gcATCCAGGCTGGTTTGCATCCCATCGTGGAACGGGGGGTTGGAGATGAT‑CAGATCAAAAC‑GA‑CCTTGCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTGC‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATc < 2:919470/239‑1 (MQ=255) aaccAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATc < 2:5702/235‑1 (MQ=255) aTCCGGGCTGGTTTGCACCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCa < 2:596915/239‑1 (MQ=255) cttgTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATACCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACtt < 2:646286/235‑1 (MQ=255) gTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑AAGGTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGGTGCGCGGCTGGCTTCTCCCGCCGGGGCAGGAGAC‑TCGCCCAAAGGGGAG‑CGAAATTTCGGCGACAGGGCCGCAAACGGAACCGAAAACAGCCCCGCCCCCCAccccgacaccacccccttac > 1:602453/1‑221 (MQ=255) ttGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACCCCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCt < 2:579132/238‑1 (MQ=255) ccATCGTGGAACGGGGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGtgtg < 2:1016778/239‑1 (MQ=255) catgggggAAGGGGGGGTTGGGAATGAA‑CATATCAAAAC‑GG‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCC‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 2:429674/233‑1 (MQ=255) cATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 2:225453/239‑1 (MQ=255) cggGTTGGAGATGAT‑CATAGCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAACACTTCA‑CCTACA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTGTCGTGTGCGGAGTTAACGTc < 2:237373/238‑1 (MQ=255) ggTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCa‑g < 2:25323/120‑1 (MQ=255) ggTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCa‑g > 1:25323/1‑120 (MQ=255) | GATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGAT‑CATATCAAAAC‑GA‑CCTTTCACCTCGGAAAAG‑ACGTTGC‑TGGCAAAGACTTCA‑CCTTCA‑ACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCA‑GAGACATCGCAC‑AAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACGTC > NC_000913/4606665‑4607132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |