New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1698341 =	87 (0.900)	3 (0.030)	3/412	NT	3.5%	coding (840/1029 nt)	malI	transcriptional repressor of Mal regulon
	?	NC_000913	1698398 =	82 (0.890)					coding (783/1029 nt)	malI	transcriptional repressor of Mal regulon

CGGGTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTC‑AAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1698583‑1698341 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttgagcaaACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATC  >  NC_000913/1698398‑1698629                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              gtgggttgggttttTTGTGCTACTTGACTAAAAGTTGGCCCGCCGTTTCATGGCGATTGGGTGTGGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCACTTTTACGTCATAACACGACCATCAGTGCCGTGTTTTGCTATAACGAAACTAAGGCGATGGGGGCATGGTTTGGTTTGCTC‑AAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTT                                                                                                                                                                                                                                                <  1:63569/223‑1    GTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTC‑AAAGCAGGGCGGCAAAGCGGGGAAAGCGGCGCCGATCGTTACTTTGAGCA                                                                                                                                                                                                                                           >  2:179740/1‑239    GTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTC‑AAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCA                                                                                                                                                                                                                                           >  2:767050/1‑239     TTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGTGAGCACATCCAGCCAGCAGCAAGCCGCGGAAGCTATCACGGCGCGTTTACGTCATAACCCGACCAACAGTGCCGTGGTTTGCTTTACAGCAACTTTTTAGTTGGGGGCATGGTTTGGTTTCTTC‑AAAGCAGTGCGGCAAAGCGGGGAAAGAGGAGTAGATGGTTACTTTGAGCAA                                                                                                                                                                                                                                          >  1:223985/1‑239              ATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACAATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCAGGGTTTGG‑TTGTTCAAAAGAAGGGCGGCAAAGCGGGGAAAGGGGGGTGGAACGATATTTTaggaaaagggtttgg                                                                                                                                                                                                                                 >  1:1175888/1‑224                                                                                                                                                                                    GTTTGGTTTGCCC‑AAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAAACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCA                                                                                                                     <  2:50745/181‑1                                                                                                                                                                                                              CAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAAACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCG                                                                                                                                                             >  1:1180644/1‑116                                                                                                                                                                                                              CAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAAACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCG                                                                                                                                                             <  2:1180644/116‑1                                                                                                                                                                                                                                 tgccctccttcttttgGCAAACCAAACCAGGGCCCCATCTCAATTGTTTCGTTAAAGCAAACCCTGGCACTGAGGGGCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCC               <  1:331974/223‑1                                                                                                                                                                                                                                              gGAGCAAACAAAACATGGCCCCCAGCGCAATAGTTTCGTTATAGCAAACCCCGGCCCTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACACCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATC  <  1:112035/238‑1                                                                                                                                                                                                                                              TGAGAAAACCAAACCATGCCCTCAATGCAATGGTTGCGGTATAGCAAACCACGGCACTGGTTGTGGGGTTAAGAAGTAAAATCGCCGTGATAGCTGCCGGTGATTGCTGCGGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCAAAATAGCCCCCAACCCGGTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGAgc  <  1:1068300/239‑3                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGGGTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTC‑AAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1698583‑1698341 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttgagcaaACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATC  >  NC_000913/1698398‑1698629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.