| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,050,039 | A→C | 3.8% | T69T (ACA→ACC) S5R (AGC→CGC) |
insA → insB1 → |
IS1 repressor TnpA IS1 transposase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,050,039 | 0 | A | C | 3.8% | 192.9 / 4.1 | 105 | T69T (ACA→ACC) S5R (AGC→CGC) | insA insB1 | IS1 repressor TnpA IS1 transposase B |
| Reads supporting (aligned to +/- strand): ref base A (64/37); new base C (2/2); total (66/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.41e-01 | |||||||||||
Only 100 of 107 total aligned reads displayed.
TTAGTGTATGATGGTGTTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGAC > NC_000913/1049801‑1050271 | ttAGTGTATGATGGTGTTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACa > 2:1152629/1‑239 (MQ=31) gtttATGGTGGTTTTTTTGAGGTT‑GTCCAGTGGCTTCTGGTTCCAACAGCTGTCCCCCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCGCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACCGcc < 2:333932/236‑1 (MQ=1) tgtATGATGGTGTTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGcc > 2:1078384/1‑238 (MQ=32) gtttttgttgttttttttTGGTTCCTCCCGTGGGTTTTGTTTCTATCGGCGTTCCCTCCGTTCCAGCGACGGGC‑GGGTGGGGAGATAACGGAAGAATCACTGCCCGACA‑TCAGCGCTTTCTC‑TGTTGCCCCTGGCGTAAAACAAGGCAACTGCATGTCACTTACACCGCTTCTCACCCCGGTACGCTCCCGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATCCCGGGCAgccgcc < 1:358428/227‑1 (MQ=0) tgatgGTGTTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCAt > 2:224971/1‑239 (MQ=32) gtgtTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGTGATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCCCATTATgg > 2:871484/1‑239 (MQ=17) tgtTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATggg > 2:84815/1‑239 (MQ=32) tgtTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGAACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATggg > 2:87333/1‑239 (MQ=17) ttttgggTT‑CCCCGGTTGCTTTTTTTTTTACGACCTGCCCCTCCTGTTCAGCTACGGGGGGGGTGTTCCG‑TAACGGCAAAACCACCGTGGGAAC‑GCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAAACTGGCAACTGCAGGTCACCTACCCCGCTTCGCAACCCGGTACGCGCCAGAAAATCAGTGATATGGCCAGGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGtt < 1:942063/234‑1 (MQ=0) tccttccctggtgCTTTTTTTTTTACCTGCTGACCCTCTTGTTCAGCTACCGACGGGGTGGTGCG‑TAACGGAAAAAGCACTTCCGGACA‑TCAGCGCTATCTC‑TGCTCCCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCCCATTATGGGCGTTGGCCt < 1:104589/227‑1 (MQ=11) tCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCACCCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTcc > 2:72573/1‑238 (MQ=14) tttCTGTCACCTGTCCCCCCTTTTTAGCTATTGGTGGGTTGTGGCG‑TCACGGCAAAAGCACTGCTGGACA‑TCAGCTCTATCTC‑TGCCCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGTCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCAt < 1:495789/239‑1 (MQ=11) tttCAATCAGCTGTCCCTCCTTTTCAGCTACCGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCAt < 2:419339/239‑1 (MQ=14) aTCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCTTCAACACG‑ATTTTCCGCCATTTaaa > 2:1015223/1‑239 (MQ=14) aTCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGCGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGATCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTTCCAACCCGGACCGCACCAGAAACTCTATGATATCGCCCTGAATGGCATTG‑GATGCCGGGCAACAGCCCGCATTATTGGCGTTGGCCTCAAACCG‑ATTTTCCGCCATTTaaa > 1:651571/1‑239 (MQ=11) cTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATggg > 2:102655/1‑201 (MQ=31) cTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATAGGCTTG‑GCGGCCGGGCAACAGCCCCCATTTAGGGCGTGGGCCTCAAAACGCATTTTCC‑CCATGTaaaaaaac > 1:1290544/1‑237 (MQ=11) cTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAAAGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACACCTTCTCAACCCGGTACGCACCAGAAAACAATTGCAATGACCCGTAATGGCGTTG‑GATTCCGGGCCACAGACAGCATTAGTGGCATTGGCCTCAACCAG‑ATTTTCGCCCATTTaaaaaaac > 1:1198788/1‑237 (MQ=11) tCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTTTGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAg > 2:493760/1‑239 (MQ=14) tCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCa > 2:232029/1‑238 (MQ=31) tCCCTCCTGTTCAGCTACTGACGGGGGGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTACCTGCAGTAAAACATGGCACCTGCAGTTCACTTACAGCGCTTCTCAACCCGGCACGCACCAGAAAATAACTGATCTGGCCAGGCATGGCGATGAGTCACCGGTCAAGA‑CCCGCATTATGGGCGTTGACCACAACATA‑GTTTTCCGCCAGTAAAAAAACtaaa > 1:752894/1‑236 (MQ=11) ctcttttccgctcttggcGGGGGGGTCGG‑AAACGGCAAAAGAATTGCCGGACA‑TAGGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCCCTTACCCCGTTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACCGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCg < 1:1153783/222‑1 (MQ=1) cccttttccacttcgggcGGGGGGGGGCC‑TACAGGCAAAAACCCTGCCGGACA‑TCAGCGCCATCCC‑TCCCCTCCCTGCCCTAAAACATGGCAACTGCAGTTCCCTTTCACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCg < 1:1078384/222‑1 (MQ=11) cctGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCCCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGc < 2:524703/239‑1 (MQ=14) ctttttgactgcttgtggggTTGTGCG‑TAACGGGAAAAGCA‑TGCCCGGCACCCAGCTCTATCTC‑GGCCCTTCTGGCCGTAAAACATGGCAACTGCAGTTCACTTACTCCGCTTCTCAACCCGTTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTT‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCa < 1:1200677/223‑1 (MQ=11) cttgtcacctatgggcGGGGTGGGGCT‑CAAAGGAAATAGCCCTGCCGGACA‑TCTGCGCTACACC‑TGCCCGCACTGCCGTAAAACATGGCAACTTCAGTTCACTTACACCGCTTCCCATCCCGGTCCGCTGCAGAAAATCATTGATATGGCCCTGATTGGCGTTG‑GATGCCGGGAAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCa < 1:927600/224‑1 (MQ=11) tCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATCGGCGTTGGCCTCAACACG‑CTTTTCCGCCATTTAAGAAACTAAGGCCGCAGCCg > 2:935889/1‑239 (MQ=9) tgctggggTGGTGCT‑TAACGGAAAAACCACTTGCGGCAA‑TCA‑CCCTTTCCCTTTCTCTCTCCGGCGTAAAAAATGGCAACTGCAGGTCAATTCCCCCGTTTCTCACCCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCTGTAACCTc < 1:1238295/235‑1 (MQ=11) tGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTc < 2:915634/239‑1 (MQ=31) gACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCCTTATGGGCGTTGGCCTCACAACG‑ATTTTCCGCCATTTAAAAACCTCAGGCCGCAGTCGGTAACCTc > 2:582292/1‑238 (MQ=9) gttgaggggggggagaaCGGAAAAAGCCTTGCCGGAAA‑TCCGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTc < 2:800258/223‑1 (MQ=11) ggggTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGATTCTCAACCCGGTACGCACCAGAAAATCATTGTTATGGCCATGAATGGCGTTG‑GTTGCCGGGAAACAGCCCCACTTATGGGCGATGGCTTCAAAACG‑ATTTTCGCCCATTTAAAAAACCAAGGCCGCatagggaaaccacgggc > 1:271491/1‑223 (MQ=11) ggtggtGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTCAAACATGGCAACTGCAGTTCACTCACACCGCTTCTCAACCCGGTCCGCACCAGAAAATCATTGATATGGCCATGACTGGCGTTG‑GATGCCGGGCAACACACCCCATATCGGGCGTTGGCCCCAATCCG‑ATTTTACGCCCTTTAACAACCCCCGGCCCCAGCCGGAACCCCcgccgtt > 1:327011/1‑235 (MQ=11) ggtggtGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACCTGGCCACCGCAGGTCCCTTCCACCCCTTCTCAACCCGGTACGAACCAGAACATCATTTCTATGGCCCTGAATCGCGTTG‑GCACCCGGCCAGCAACCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCCCCATTTAAGAAAACCAGGcgccatgcgatgcaccgcgcgtc > 1:986826/1‑217 (MQ=11) ggtgCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAAAACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATAc > 2:411322/1‑238 (MQ=14) cG‑TAACGGCAAAAGGCCTGCCGGACA‑TCAGCGTTATCCT‑TGCTCGCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGcc < 2:1191751/238‑1 (MQ=9) aaaGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGAc > 2:1166081/1‑238 (MQ=31) tGCCGGCCA‑TCAGCGCTATCTC‑TGCCCCCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACCCCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGt < 2:651571/239‑1 (MQ=9) cactCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTgcg < 2:935931/235‑1 (MQ=14) ggcctttttctgtcccccccTGCCAGAAAACATGGCAATTGCAGTTAGCGTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGaaa < 1:232029/220‑1 (MQ=11) gcgcTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGCCGTCCTCGTCTGCCCGGAAAt > 2:471585/1‑239 (MQ=14) gcTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGaaa < 2:323873/236‑1 (MQ=31) aTCCC‑TGCTCCCCCTGCCTTTAAACATGGCAACTGCAGTTCACTTACACCGCGTCTCAACCCGGTACGCACCAGAAAATCAGTTATATGGCCATGAATGGCGGTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACg < 2:692998/239‑1 (MQ=11) tctc‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGGATTCGTATGAGCGGAAATGGACGa > 2:1175300/1‑239 (MQ=9) tttcgttctcccccccGTAAAACAGGGCAATTGAAGTTCACTTACACCGCTTCTCAACCCGGTACGCACAAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACGCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGaa < 1:493760/225‑1 (MQ=11) ttcttatccccTGGCGTAAAACATGGCAACTGCAGTTCTATTACACCGCTTCCAAACCAGGTTGTCACCAGAAAATCATTGATTGGGCCAGGAAATGCCGTG‑TATCGCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAAc < 1:224971/229‑1 (MQ=11) tcctccccTGCCGTAAAACTGGGCAACTGCAGTCCACTTCCACCGTGTCTCACCCCGGTCCGCACCAGAATATCATTGATAGGGCCATGAATTGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATGTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGt < 1:582292/232‑1 (MQ=11) gccctccctcgcgaaaaaactGGCAACTGCAGTTACCCTCCACCGCTTCCCAACCCGGTCCGCACCAGAAAATCCGTGATATGGCCATGAATGGCCGTG‑GATGCCGGGCAACAGCCAGAATTATGGGCGTTGGCCTCAACACG‑ATTTTACGCCATTGAAAAAACTCAGGCCGCAGGCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGt < 1:471585/219‑1 (MQ=11) gCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACCGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCCCATCCAGCCGGGAAGTGAAGCCAACGCCTggcgggaaaagggcccgat > 1:1221835/1‑219 (MQ=1) ctctCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCTGGCACTGACGTCATCGCCTGCGCGGGCAGGGACGAACAggg > 2:693651/1‑237 (MQ=9) ccgttccGTAAAACCTTGCAAATGCCGTTCACTGACACCGTTGCTCAACCCGGTACGCACCAGAAAGTCAGTTAGATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCGTAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCTCAGTCGGTAGCCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGa < 1:1015223/234‑1 (MQ=11) cACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACCAAGGCCGCAGGCGGTAACCTCGCGACTACAGCTGGGCAGTGACGCAATCGTCTGCGCGGAAAGGGACGAACAGGGGGGa > 1:1098730/1‑239 (MQ=11) aCTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACaaggggaaa > 1:353639/1‑231 (MQ=14) ccccaacaCATGGCAGCGTCACTTTACTTCAGCCGCTTCCCACGCCGGTACGCGCCAGAAATTCATTGGTATGGTCATTAATGTCGTTG‑GATGCCGGGCACCAGCCCGCATTATTGGAGTTTGCCTTAACACG‑ATTTTCCGCGCTTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACCGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGCAGAACAGTGGGGATACGt < 1:748004/232‑1 (MQ=11) ccGTAAAACATTGCAACTTGAGTTCACTTACACCGCTTCTCAACCCGGTACGCCCCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGt < 1:984807/239‑1 (MQ=9) cGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGGACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGAAGTCGGTAACCTCACGCCTACATCCGGGCAGTGACCGCATCGTCTGCGCCGAAACGGGAGGACAGTTGGGAAACggc > 1:374772/1‑237 (MQ=11) tGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTTCGCGGAAATGGACGAACAGTGGGGATACGTCCGGGCTaa > 2:1019198/1‑238 (MQ=14) tGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGCCAGTGACGTCCTCGCCTGCGCGCAAATGGACGAACAGTGGGGATACCTCGGGGCTaa > 2:368590/1‑238 (MQ=9) ggCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTg > 1:403022/1‑185 (MQ=31) ggCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTg < 2:403022/185‑1 (MQ=31) ggCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGa < 1:803733/210‑1 (MQ=31) ggCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGa > 2:803733/1‑210 (MQ=31) aCTGCGGTTCCCTTTCACCGCTTTCCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATcgcg < 2:271491/239‑1 (MQ=9) cggctCACCTACAGCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGATG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCAGCCATTTAAAATACTCAGCCCGCAGTCTGTACCCTCGCGCATACAGCCGGGAGGTGCCGCTATCGTCTGGCAGGGAATGGACCCACAGCGGGGATACGCCggggtcgaaactgcccc > 1:586877/5‑225 (MQ=11) gTTCACTTACACCGATTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGGAATGGACGACCAGAGGGGGAACTGAGGGGCGAAATCGCGCCAgc > 2:1219605/1‑238 (MQ=11) cACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGAAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAAAGGACGAAAAGGGGGGGTACGTCGGGGCCAAAATGCGCCacaccgg > 1:61638/1‑233 (MQ=11) aCTTACCCCGCTTCCCAACCCGGTACGCAACAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAAt < 2:1026099/225‑1 (MQ=14) aCTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACg < 2:1034581/198‑1 (MQ=31) cTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCACCAGCCCGCATTATGGGCGTTGGCCTCAACGCG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCgctggc < 2:103059/239‑1 (MQ=14) ccGCTTTCCAACCCGGTACGCCCCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGtttt < 2:1290544/239‑1 (MQ=14) ccGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGtttt > 2:308010/1‑239 (MQ=31) cTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACCGCCCGCATTATGGGCGTTGGCCTCAACCCG‑CTTTTCCGCCATTTAAAAAACTCCGGCCGCAGTCGGTAACCCCGCACAACCAGCGCGTCAGTGACGTCATCGGCTGCGCGGACAAGAACGGACAGCGGGGGAAGGTCGGGGCTGAAAcgaccaaaccgtgggagtattaag > 1:293564/1‑217 (MQ=1) cTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGGTACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTAc > 2:1082391/1‑238 (MQ=14) cTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCGGTTTTAcg > 2:423877/1‑239 (MQ=14) cTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCACACCTGGCTGttttctg > 2:46514/1‑236 (MQ=9) cTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATAGCGCCACGGCTGGCTGTTTTaag > 2:493793/1‑237 (MQ=14) tctcAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGAATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGAGGGGATACGTCGGGGCTAAATCGCGCCCGCGCTGGCTGTTTTAcgcg > 2:918839/1‑239 (MQ=14) aaCCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATg > 2:1196023/1‑239 (MQ=31) ccGGTCCCCCCCAAAAAATCATTGTTAATGCCATGAAGGGGTTGG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTACCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACa < 1:1196023/239‑1 (MQ=11) ggTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCCTCGTCTGCGCGGAAATGGAGCAACAGTCGGGGGACGTCGGGGCCAAATCGCGCCAACGCCTGCTGTTTTaaccgaaggaaagg > 1:1215208/1‑226 (MQ=11) ggTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATGTTCTGCGCGGAAATGGACGAACAGAGGGGATACGTCGGGGCTAAATCGCGCCCGCGCTGGCTGttttcaccggatgactg > 2:850160/1‑225 (MQ=11) aCCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GAGGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCATCTGCGCGGCAATGAACGAACAGTGGGGATACGTCGTGGGTAAATCGCCCCAGCCCTGGCCGGTTTAAGCGATTAACAGGCCCCGGa > 1:860274/1‑239 (MQ=11) ttGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGCCTGCGCGGAAATGGACGACCAGTCGGGATACGTCGGGGCTAAATCGCGCCCGCGCTGGCTGTTTTACGCGTATGACAGGCCCCGGAAGCC‑Ggttgtt > 2:130274/1‑238 (MQ=9) ttGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGGCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGGATGGACGGCTCCGG‑AGACAGgttgtt > 2:1301743/1‑238 (MQ=11) gATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTgcg < 2:860274/239‑1 (MQ=31) tatGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCa < 2:877384/239‑1 (MQ=31) gCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGAAAGGCTCCGGAAGAC‑GGTTGTTGCGCACGTa > 2:381552/1‑239 (MQ=14) gCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCACGCCTGGCTGTTTTAAGCGTATGACAGGGCCCGGAAAAG‑GGttgttgggacggaa > 1:537031/1‑231 (MQ=11) aTGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTACGCGTCTGACAGGCTCCGGAAGAC‑GGTTGTTGCGGCAGTATTc > 2:138432/1‑239 (MQ=9) gAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGCAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCACGCATTCgg > 2:971885/1‑239 (MQ=14) gggTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCACGTATTCGGTGaa < 2:327011/236‑1 (MQ=14) gCGTTG‑GATGCCGGGCAACAGGCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCACGTATTCGGTGaa < 2:1101049/238‑1 (MQ=14) gCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTCAATCGCGCCAGCGCTGGCTGTTTTACTGGTATGACAGGCTCCGGAAAAC‑GGTGGTTGCGCACGGATTCGGTGaa > 2:557941/1‑238 (MQ=9) gCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCCGCGCTGGCCGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCCCGTATTCGGTGaa > 2:606065/1‑238 (MQ=14) cGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAGAAC‑GGTTGTTGGGCCCGAATTCGGGGAAc > 2:383133/1‑238 (MQ=9) cGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGGGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTCGGACAGGCCCCGGAAGAC‑GGTTGTTGCGCACGTATTCGGTGAAc > 2:1251040/1‑238 (MQ=9) gaagCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGCCAGGCTCCGGAAGAC‑GGTTGTTGCGCACGGATTCGGGGAACGCACTa > 2:665975/4‑239 (MQ=9) gCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCACGTATTCGGTGAACGCACTATgg < 2:537031/239‑1 (MQ=31) cGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGCACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGACTGACAGGCTCCGGCAGCC‑GGTGGTTCCGCACGAATTCGGTGAACGCACTATTGc > 2:792622/1‑238 (MQ=11) ggCAACAGCCCGCATTATGGGCGGTGGCCTCATCACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTAGCGCATACAGCAGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGACCATGCGGGACACGGCGGGGCTAAATCGAGACAACGCTGGCGTGTTTAGTCGATTGAAAGGCACAGGCAGAC‑GCGTGATGGCCACGTTTTTGGTGAACGGACTaagccgga > 1:220319/1‑232 (MQ=2) | TTAGTGTATGATGGTGTTTTTGAGGTT‑CTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG‑TAACGGCAAAAGCACTGCCGGACA‑TCAGCGCTATCTC‑TGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG‑GATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACG‑ATTTTCCGCCATTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC‑GGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGAC > NC_000913/1049801‑1050271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |