| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 175,537 | T→G | 21.0% | V144G (GTG→GGG) | clcA → | H(+)/Cl(‑) exchange transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 175,537 | 0 | T | G | 21.0% | 118.7 / 3.8 | 56 | V144G (GTG→GGG) | clcA | H(+)/Cl(‑) exchange transporter |
| Reads supporting (aligned to +/- strand): ref base T (9/33); new base G (12/2); total (21/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.14e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGGTACATACTGCTGATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCGGTATTTATTGG > NC_000913/175308‑175768 | cTGGTACATACTGCTGATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGGGGCATGGGGTTtggggc > 2:535860/1‑237 (MQ=255) tgtgtttaatagacagtAATTATCCGCTGCGTTTAACCGTCGCTTTTCGCTGTTCGGCGGTGCGGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGgcgc < 2:913323/223‑1 (MQ=255) cATACGTCTTATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGTTCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAgg < 2:64230/239‑1 (MQ=255) aCTGCTGATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGGGTTGGGGCGCGAAGGGcc > 2:916615/1‑239 (MQ=255) aCTGCTGATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGGTCTTTGGCGGGC‑TGGGGACACCCGGCGGAGGCTTGGGGGTGGGGCGCGAAGGGcc > 2:650312/1‑239 (MQ=255) tgctgATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGGGTTGGGgctgtctctttaac > 2:351428/1‑227 (MQ=255) tgctgATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGGATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGAAACTCGGCGGAGGCATGGGGTTGGGGGCCGAAGGGCCa > 2:948769/1‑238 (MQ=255) tgctgATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGGATTGCCGGGGAAGTTTTTTGGCGGGC‑TGGGGACACTGGGCGGGGGCATGGTGTTgggggcggcggggccc > 1:848106/1‑226 (MQ=255) tgcagATAATTTTCCGCTTCTGGTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTGCTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCaa < 2:1246492/239‑1 (MQ=255) gtcttttttgtttCCTCTTTTTTTAACCGTTGTTTTTCTCTGGTCGGAGGTGGTGGGGGTGGTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGAGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCaa < 1:535860/227‑1 (MQ=255) ctgATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCCGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTCCGCTGGTGGCGGGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACAATCGGAGGAGGCATGGGGTTGGGGCGCGAAGGGCCAAcc > 2:408845/1‑239 (MQ=255) ctgATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGGGTGTATTGCCGGGGAAGGTCTTTGGGGGGC‑TGGGGGCACCCGGGGGGGGGATTGTGTGGGGGGGGCGAGGGGCAAcc > 1:1146869/1‑239 (MQ=255) ctgATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGGGTTGGGGCGCGAAGGGCCAAcc > 2:1164853/1‑239 (MQ=255) attaTTGTCCGCTTCTTTTAACCGGCGATGTTCTGTTTTCGGGGGTGCGGGCGAGGTTTGGCTGCTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATGAACGTCCCGTTCGGTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGGGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTg < 1:857288/236‑1 (MQ=255) gCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGCAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGGGGCGGGTATTGCCGGGGAAGTTCTTTGGCGGGC‑TTGGGACACTCGGCGGTGGCATGGTGTTGGGGGGCGAAGGGCCAACCGTGCAGGTcgcgg > 2:40701/1‑236 (MQ=255) cTTTTGGTAACCGTCGGTTTGCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTGTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGTTCCGGGAAATTGGAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATcggc‑gg < 2:234975/239‑1 (MQ=255) ttCTGTTAACCGTCGCTTTACTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATcggc‑gg < 2:707199/238‑1 (MQ=255) ttCGGTTAACCATCGCTTTTCTCTGTTCGGCGGTACTGGCGATGTTTGGCAACTTTTTGGTCCGCGAATAAGCGCAGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGCAGATCAACGCCCCGTTTGCCGGGGGCGCGAATTGCAGGCGAAGTTCTCTGGGGGGCGTGGGGA‑ACGCGGCCGGGGCAAGATGTTGGGGGGCGGAGGGcgcaactggatcttattcagc > 1:913323/1‑219 (MQ=255) ttAACCGTGGCTTTTCTCGGTTCGGGGGTGGTGGCGATGTTTGGCTACTTTTGGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACAt < 2:299128/239‑1 (MQ=255) ttAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACAt < 2:964998/239‑1 (MQ=255) ttAACCGTCGCTTTTCCCTGGTCGGCGGTTCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACAt < 2:225012/239‑1 (MQ=255) aCCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTgg < 2:848106/239‑1 (MQ=255) cGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACTCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTAGCCGGGGGCGGGAATTGCCGGCGAGGGTGTTTTGCGGGC‑GTGGGGCACCGCGCGGGGGCCGGGGGTTGGGGGGCGCAGGGCGAACGGTGCAGactcgggggggcaacggcg > 1:1180130/1‑221 (MQ=255) cGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATcggc‑gggtaaatttgcc > 2:979236/1‑228 (MQ=255) tCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGGCACCCGGCGGAGGCATGGGGTTGGGGCGCGCAGGGCCAACCGTGCAGACctgc‑ggggaaactagccga > 2:947012/1‑226 (MQ=255) tCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATcggc‑ggcatccatttgcgg > 2:676825/1‑226 (MQ=255) tCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACCCGGCGGAGGCATGGTGTTGGGGGGCGAAGGGCCAACCCGGCAGATCGGC‑GGTAACAATGGCCgg > 2:672451/1‑238 (MQ=255) cGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGGGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGGCGGTGAAGTTCTTTGGCGGGC‑TGGGGGCGACCGGCGGGGGGAAGGGGTTGGGGGGGGGAGGGCCAAACGGGCAGacaggggggaaaaatagggggg > 1:619107/1‑218 (MQ=255) gttttgtactGTGCGGTGGTGCTGGAGATGTTTGGCTATTTTTTGGTGCGAAAATACGGCACGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCTCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTTTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTAt < 2:696097/231‑1 (MQ=255) tctcTGGTCGGGGGTTCTGGCGATTTTTGGCTGTTTTTTGGTGCGAAAATACGGGTCGGAAGCAGGTGGTTCGGGGAGCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGc < 2:1256568/239‑1 (MQ=255) tcgTTTGGGGGTGTTGGCGGTGTTTGGCTTCTTTTTGGGGGGCAAATACGGGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTg < 1:979236/237‑1 (MQ=255) ggTTCTGGCGATGGTTGGCTACTTTTTGGTGCGCCAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTc < 2:866044/238‑1 (MQ=255) ggTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGGCGGAAGCAGGTGGGTCGGGGATACCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTc < 2:632188/238‑1 (MQ=255) ggTGCTGGCGATGTTTGGCTACTTTTGGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTc < 2:1146869/238‑1 (MQ=255) tGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGGATGGGGGTTGATATTTTCCg > 2:626832/1‑238 (MQ=255) cTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGGAACCATGGCCGGATgggggtttgtgattttccccg > 2:205822/1‑220 (MQ=255) cTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGCGGCATGGGTTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGCGGGGAACATTGCCCG‑ATTGGGGTTGTAATTTTTCCCCTTAAAGGTGACGacagc > 2:1077834/1‑234 (MQ=255) gcgcAAATACGGGCCGGAAGCGTGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACg < 2:666179/238‑1 (MQ=255) cgcAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGt < 2:64638/177‑1 (MQ=255) aTTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGAt < 2:512399/128‑1 (MQ=255) cTGGAAGATCAACGGCCTGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTgg < 2:690211/238‑1 (MQ=255) tGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGc < 2:619107/238‑1 (MQ=255) gtaagttccacgctctgttggttgggggCGTGTATTGGCGGGGAAGTTCTTTGGCGGGA‑TGGGGACACTCGGGGGGGGCATGGGGGTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCgg < 1:205822/217‑1 (MQ=255) tCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTAtt < 2:1180130/238‑1 (MQ=255) cGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGGGTTGGGGCGCGAAGGGCCAACCGGGCAGATCGGC‑GGGAACAATTGGCGGGTGGGGGTTGTTATTTTTCGCCCGCAAGGGGACGAGGCGCGCCGTAAGCTGCTTGCGACCAGGGGCGTCGCGGGGCGGGCGTCGGCGCTTTACCGGGCGCCTgggggggggtttgtgtttt > 1:364522/1‑226 (MQ=255) tATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGc < 2:816178/184‑1 (MQ=255) tatGCCGGTGAAGTTCTTGGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGTGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCg < 2:960298/236‑1 (MQ=255) aTTGCGGGTTAAGTTCGTTGGCGGGC‑TGGGGACCCTCGGGGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCg < 2:800235/238‑1 (MQ=255) tGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAAcgcg < 2:92194/188‑1 (MQ=255) aGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCta < 2:785637/238‑1 (MQ=255) tCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACg < 2:1093283/239‑1 (MQ=255) gctggggggggggatgggTGTGGGGGGGAGAGGGACCAA‑CGTGCGAATCGGG‑GGGACCCTGGGCCGTTTGGTGGTGTACTTTTTCCGACTGAAAGTTGGCGAGGCTGGCCATGCGCTGCTGGCAACCGGTGCTGTTGCGGGGCTGGCTGCGGC‑CTTTAACGCTCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAAATTCGATTAAAGCg < 1:958145/222‑1 (MQ=255) cctgtgcggagtggttgtgtTGGGGCGGGGAGGGACAACGGTGAGGATCGGC‑GTGACGATTGGCCGTATGGGGTTTGAGTGTTTCCGGCTGAACGGGGACCAACCCCGTCATACGCTGTGGGCAACAGGTGCTGCTGCGGGGATGGCTGCGGC‑CGTTAACGCGCCGTTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCg < 1:408845/222‑1 (MQ=255) acTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCg < 2:364522/238‑1 (MQ=255) acTCGGCGGAGGCAGTGTGTTGGGGCGCTAAGGGCCAACCTTTCAGATCGGC‑GGTAACATTGGCCGTATGGTTCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCg < 2:87624/238‑1 (MQ=255) tCGGCGGAGGCATGGGGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCGGta < 2:139140/239‑1 (MQ=255) ggggCATGGTGTTGGGGGGAGAAGGGCCAACCGTGGAGGACGGG‑GATAACATGTGCCGGTTGGTGTTTGATATTTGCCGCCTGAAAGGTGACGAAGCCCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCGGtatttat < 1:916615/236‑1 (MQ=255) ggagtgtgtGGGGGGGGGAGGGGCCAACCGTGCGGAGGGGC‑GGTAACATTGGCCGTATGTTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCGGTATTTATTgg < 1:1164853/233‑1 (MQ=255) | CTGGTACATACTGCTGATAATTATCCGCTTCTGTTAACCGTCGCTTTTCTCTGTTCGGCGGTGCTGGCGATGTTTGGCTACTTTTTGGTGCGCAAATACGCGCCGGAAGCAGGTGGTTCGGGGATCCCGGAAATTGAAGGGGCGCTGGAAGATCAACGTCCCGTTCGCTGGTGGCGTGTATTGCCGGTGAAGTTCTTTGGCGGGC‑TGGGGACACTCGGCGGAGGCATGGTGTTGGGGCGCGAAGGGCCAACCGTGCAGATCGGC‑GGTAACATTGGCCGTATGGTGCTTGATATTTTCCGCCTGAAAGGTGACGAAGCTCGCCATACGCTGCTGGCAACCGGTGCTGCTGCGGGGCTGGCTGCGGC‑CTTTAACGCGCCGCTGGCGGGTATTTTGTTTATTATCGAAGAGATGCGTCCGCAGTTTCGCTATACGTTAATTTCGATTAAAGCGGTATTTATTGG > NC_000913/175308‑175768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |