| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,274,347 | T→G | 29.8% | G57G (GGT→GGG) | yejB → | microcin C ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,274,347 | 0 | T | G | 29.8% | 91.6 / 18.1 | 73 | G57G (GGT→GGG) | yejB | microcin C ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (12/37); new base G (21/3); total (33/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.62e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
GATACCTGGTGGTATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGT > NC_000913/2274111‑2274580 | gATACCGGGTGGTATGACGGCAATAAAGCGGCCAACCTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGgtgt < 2:1232426/239‑1 (MQ=255) ttcccTGGTGGTTTGACGTCAATAAAGCGGCCAAACGGCCGTCCGCCAGCAAAAAGGGAGAGTAGATGGGCGTTTACCTGATTCCCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGtt < 1:334957/236‑1 (MQ=255) ctccttggtggTAACCCGACTATAAGGCGGCAAAACTGCCTGCCGCCGGCAAACGGGGAGAGTAGATGGGTGCTTCCCGGATTCGCCTTGTGTTGCTGGGGATCCCAACATTAGGGGGGATTATCCCCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGtt < 1:422122/234‑1 (MQ=255) tggtggTATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCCGGCGGGG‑AAGGGGtttggt > 2:1169391/1‑234 (MQ=255) tATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGTTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGCG‑CAGGTGTTccggacgccca > 2:460102/1‑229 (MQ=255) tATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGG‑AAGGGGTTCGTgccagc > 2:1020012/1‑237 (MQ=255) tATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGCGGGGG‑CAGGGGTTACTgcccgcc > 2:209327/1‑238 (MQ=255) tATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGCCGACAAGGCCATCG‑CCGCCATTGAGGTTGCTAATGCCGGGGGATTACCCGGCACAGGCGGGG‑GAGGGGTTCGTgccgtcc > 1:580067/1‑234 (MQ=255) ttgtgagaaatacacggcccAACCTGCCCGGCGTCAGCAAAAAGGGGGAGGGGATGGGTGCTTACCTGATCCGCCGTTCGTTGTTGGCTGTCCAAATATTCTGGGCTATTAGCACCATCAAATTTTACAGCGGTAAAATTGCGC‑CGGGCGGTCTGCTCGACCAGGCCTGCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTgccagcca < 1:74938/220‑1 (MQ=255) aTGGCGTCAAAAAAGCGCACAAGCGCCCTGCCGCCGGAAAAGAGGGAGAGTCAATGGGCGCTTCCCTGATTCCCCTTCTGTTGCGGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCACCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCAt < 1:946722/239‑1 (MQ=255) cGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGCGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATAG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGG‑AAGGGGTTCGTGCCAGCCAtcggc > 2:45371/1‑235 (MQ=255) gTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTT‑AAGGGGTTCGTGCCAGCCATGCGCa > 2:584185/1‑239 (MQ=255) aTAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCAGCCATGCGCCAACg > 2:1169437/1‑239 (MQ=255) aggggCCAAACTGCGGGCCGGCAGCAAACAGGGAGGTTAAATGGGCGTTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGgtg < 2:94425/236‑1 (MQ=255) aGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGG‑AAGGGGTTCGTgttgtctcttttaaccacttcc > 2:735514/1‑218 (MQ=255) cGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGCCGGTG‑AAGGGGTTCGTGGCGGCCATGGCCAAACGGgggtg > 2:1245350/1‑238 (MQ=255) cGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGACCGGTCGACAAGGCC‑TCGTCCCCCATGGAGTTTGTTAATGCCGGGGCATACCCCGGGCCAGCCGGTG‑AAGAGGTTCGGaccaaccaaacagaaagggagggg > 1:582549/1‑223 (MQ=255) cGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CGGGCGGTCCGGTCGACCAGGCCATCC‑CCGCCATTGGTTTTGGTAGTGCCGGAGTATTACCCGGCGCAGGGGGTG‑AAAGGGGTCGTTCAACCCATGGGAAAACggagggc > 1:1104920/1‑234 (MQ=255) gTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCCGCCATGCGCAAACGGGGGTCgcgcaaataagc > 2:829707/1‑227 (MQ=255) agCCAGCAAAAAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGAc < 2:752061/237‑1 (MQ=255) agTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGGATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCAGCCATGCGCCAACGGGGGTCGGCCATATCAGCGACAGCAAT‑T‑ACCCGGGCgg > 2:661967/1‑238 (MQ=255) aGATGGGCTCTTCCCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGAcg < 2:1264007/238‑1 (MQ=255) cgcTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGGGACAAGAAT‑T‑ACCGtccgtctcttataaaca > 2:1277659/1‑223 (MQ=255) cTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGa > 2:1059464/1‑238 (MQ=255) cTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCAGCCATGGGCCAACGGGGTTCGGCAATATCAGCGACAGGAAT‑T‑ACCCGGGCGGACCCGGAtttaa > 2:1177468/1‑235 (MQ=255) cTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGG‑AAGGGTTTTGTGCCAGCCATGCGCAAACGGGGTTCGGCAACATCAGCGCCCGTAAT‑T‑Acccggggggtccgcggttgca > 2:30111/1‑219 (MQ=255) tttccTGATTCGCCGTCTGTGGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTTCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATc < 2:1150425/236‑1 (MQ=255) aCCAGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCCCCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCa < 2:242590/239‑1 (MQ=255) ttGCTGGTGATCCCAACATTATGGGCGATTATCCCCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCt < 2:662047/234‑1 (MQ=255) ggggatcccacaacttgtGGGCCGTTATCCCCTTCAACTTTTTCCTCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCAGCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ATCGTGGCGGACGCGGATTAGATCCAGAAGGGATCGCTGAGATCACt < 1:1020012/222‑1 (MQ=255) ggTGATCCCAACATTAGGGGCGATTAACACCATCAACTTTTTCATCATGCAAATTGCGC‑CTGGCGGTTCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACt < 2:1296612/238‑1 (MQ=255) gTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCCTCG‑CCGCCATTGAGTTTGGTAATGCCGGAGCATTACCCGGCGCAGGCGGCG‑ACGGTGGTCGTGCCAGCCATGAGCAAAACGGGGTCGGGACTATCAACGACAGTAATAT‑ACC‑CGGCGGACGCGGGGCAGAACCCAAAGTGATCCCGgaggagacta > 1:1155148/1‑231 (MQ=255) tgtcccaactgttATGGGCGATTATCACATACCAATTTTTCATCGTGCAAAGTGCGC‑CGGGCGGCCGGGTCGACCGGGCCATCG‑CCGCCAGTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTTCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGTCAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCAt < 1:19175/228‑1 (MQ=255) tCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGG‑AAGGGGTTCGGGCCAGCCCAGCGCAAACGGGGGGCGGCAATATCAGCGGCCGTAAT‑TAACCGGGGGGGCCG‑GGGTTATATCCAAAAAGGATCGGCGAAATCACTCaccat > 1:662047/1‑235 (MQ=255) ccAACATTTTGGGGTATTACCCCCATCAACTTTTTCAGGTTGAAAATGGCGC‑CTGGGGGCCCGGTCGCCCAGGCCTTGG‑CCGCCATTGAGTTTGTTAATGCCGGAGTATTTCCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCAAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTa < 1:1245350/239‑1 (MQ=255) caaacttgtggggggttttcctccAACAATTTTTCCGTCGTAAAAATTGGGC‑CGGGCGGTCCGGGCGACCGGGCCAGCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCCGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTa < 1:1177468/217‑1 (MQ=255) cAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGG‑AAGGGGTTTGTGCCAGCCATGCGGAAACCGTGGGCGGCACTTACAGCGGCCGTAAT‑T‑ACCGTGGGGGACGCGGGTTAGATACAGAAGGGGGCGCTgcgagaccccctcccccc > 1:298288/1‑225 (MQ=255) tGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACCGTAAT‑T‑ACCGTGGCGGACGCGGGTTAGATCCCGAAGTGATCCCTGAGATCACCCACCGCTACGGGTTTgt > 2:1198639/1‑238 (MQ=255) tGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGGGCCAGCCAGTGGCAAACGGGGTCCGGCAAAATCACGGAAAGTAAT‑T‑ACCCTGGCGGACGCGGGTTGGATCCCGAAGTGATCGCGTGGATCAccaaacgccaggggttgga > 1:351342/1‑221 (MQ=255) gggcggttaagcccctacaCTTTTTAAGCGTGACAATTGGGC‑CGGGGGGTGCGGTCGCACAGGCCATGG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGAt < 1:1169437/221‑1 (MQ=255) ggCCATTACCACCATCAACTTTTTCATCGGGCAAAGTGCGC‑CGGGGGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGAt < 2:481173/238‑1 (MQ=255) aTTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGGGGCGGACGCGGGTTAGATCCAGAAGGGATCGCTTGGATCACTCATCGCCCCGGGTTTGGTAAAcc > 2:546968/1‑239 (MQ=255) ttactcccATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCg < 2:1104920/233‑1 (MQ=255) tATCCCCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGa < 2:1024348/239‑1 (MQ=255) taTCAATTTTTTCATGTTGCAAATTGCGC‑CTGGGGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGTGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACg < 2:319790/238‑1 (MQ=255) cATCAATTTTTTCATCGTGCAAATTGCGC‑CGGGCGGTCCGGTCGACCGGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACg < 2:478103/239‑1 (MQ=255) tttCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGGGATCGCTGAGATAACTCATCGCTACGGGTTTGATAAGCCGATCCACGCACGTTACt > 2:879276/1‑239 (MQ=255) tctGCACATTGTGCGCTGGCTGCCCGCTGGCCCAGGCTACGG‑CCTCCATTGGTTTCGGTAACGCAGGAGTTTTGCAGGGCGCCGGCGGTG‑ACGGTGTTCGTGCCACCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ATCGTGGCGGACGAGGATTAGATCAAGAAGTGCACGCTGAGATCACTAATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTATGTCaaa < 1:1246216/237‑1 (MQ=255) tGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCACACCATGCGCAAACGGGTGGCGGCCATACAAGCGACAGTAAT‑T‑ACAGCGGCGGACGCGGGGTAGATCCCGAAGGGGTCGCGGAGGAGACTACACCCTACGGTGTTGATACCGCCATCCACCGACGTTCACTCAAAAt > 1:4266/1‑238 (MQ=255) tccggtcGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCt < 1:396903/179‑1 (MQ=255) tccggtcGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCt > 2:396903/1‑179 (MQ=255) ccggtcGACCAGGGCATCG‑CCGCCATTGGGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTCCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCt < 2:1222713/238‑1 (MQ=255) gtcGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTTGATCCAGAAGTGATCGCTGCGATCACTCATCGCTACGGGTTTGTTAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCCCTTTGa > 2:744955/1‑239 (MQ=255) gACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGAtt < 2:574287/238‑1 (MQ=255) cgCCTTCC‑CCGCTTTTTAGTTTTTTTATGCCGGGGTTTTACCCGGGGGCGGCCGTG‑AAGGTGTTCGGGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCg < 1:584185/238‑1 (MQ=255) ccATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGa < 2:351342/238‑1 (MQ=255) tcctgggcgccATTGGGTTTTGGAAGGCCGGAGTATTACCCGGCGCGGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGGCGGCAATATCATCGACAGTAAT‑T‑TCCGGGGCGGAAGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGa < 1:1198639/231‑1 (MQ=255) tCG‑CCGGCAGTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGc < 2:290063/239‑1 (MQ=255) ccATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGGGATCGCTGGGATCACTCCTCGCTACGGTTTTGGTAAGCCGATCCACGGACGTTACCTCCAAATGCTCTGGGACTACATCCGCTTTGATTTTTGCGATAGCCTGtt > 2:381433/1‑238 (MQ=255) tttggattGCCGGTGTATTTCCCGTCGC‑GTGGGTGTAAGGTTTGTGTGGCAGCCATGCGCAAACGGGTGTCGGCAATATCAACTACAGTAAG‑T‑GCCGTGGCGGAAGAGGATCAGATCCTGAAGTTATATGTGAGATCTTTCATGGCTACTGTTTTGATAAGCCGAGCCACGAACGTTACTTCAAAATGCTCTGGGACTACGTCCGCTTTGATTTTGGCGATGGCTTGTTTCGCGGCGcc < 1:460102/232‑1 (MQ=255) gtgtaatccggtgtttttACCCGGGGCAGGGGGGG‑AAGGTGTTCGGGCCAGCCAGGCGAAACCGGTTTTCGGCAATAGAAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGACCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATTCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCt < 1:1099325/223‑1 (MQ=255) ggTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGGGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCCAAAAGCTCTGGGCATACAACCGCTTTGATTTTGGCGATAACCTGTTTCGCAACGCCTc > 2:540335/1‑239 (MQ=255) tGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGGTTAGATCCCGAAGTGATCGCCGAGATCACTCATCCCCACGGGTTTGATAACCAGAACCCCGAAAGTTTATTCAAAAATCTCTTGGACTCAAACCCCCTTTATTTTGGGGCTAGccctttttcaccagccccgggtc > 1:100675/1‑218 (MQ=255) tattttcccGGGGCAGGCTGTC‑ACGGGTTTAGGGCCAGCCCTTGACAAACGGGTGCCTGCAATAGCAGCGACAGGAAT‑G‑TCCGTGGCGGACTGGTATTAGAGCCAGAAGTGATCGCTGAGATCACTCATCGGTACGGTTTTGATAAGCCTATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 1:1110136/232‑1 (MQ=255) gTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 2:305940/238‑1 (MQ=255) gTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGGGCCAGCCATGCGCAAACGGGTGTAGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 2:709411/238‑1 (MQ=255) aaaTTACCCGGGGCGGGCCGTG‑AAGGTGATCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 2:365042/236‑1 (MQ=255) tATTCCCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 2:1220779/237‑1 (MQ=255) tATTACCCGGCGCAGGCGGTG‑AAGGGGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGct < 2:1013785/175‑1 (MQ=255) ccGGCTCAGGCGGTG‑AAGGTGGTCGGGCCCGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGCAGCGGATTAGATCCAGAAGTTATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTaaa < 1:1059464/239‑1 (MQ=255) cgcAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCCGCGGCAGTAAT‑T‑ACCGGGGCGGACGCGGGTTAGATCCAGAAGTGATCCGTGGGATCACTCCTAGCCACGGTTTTGATAAGCCGAACCACGAAAGTTACTTCAAAAAGCCCTCGGAGCACATACGCTTTGATTTTTGGGGTAACCTGTTTCGCCACGCCCCGGGGCGGACGcgcgtgaaaaaca > 1:1220779/1‑227 (MQ=255) cgcAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGGCAGGAAT‑T‑ACCGGGGGGGACGCGGCTTTGATCCACAAGTGATCGCTGGGAACACTCCTCGCGCACGTTTTGGTAAAGCGCACCCCGAACGTTACTTCCAAAAGCCCCGGGCGCACATCCGCTTTGATTTTTGCGATAGCCCTTTTCTCAGCGCCCCGGGGCGCACGCCGTTTTAAAACa > 1:10282/1‑239 (MQ=255) cggggggagaGGGGTTCGGGCGACACATTCGCAACCGGGGGTGGGCAATATAAGCGACAGTAAT‑T‑ACCGGGGGGGAGGCGGATGAGATCCAGAAGTGATCGGTGAGACCACACATCGCTACGGTTTTGATAAGCCGATCCACGAACGGTACTTGAAAATGCTCTGGGACTACATCCGATTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGAAAGt < 1:1169391/229‑1 (MQ=255) aaGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGt < 2:1155148/238‑1 (MQ=255) | GATACCTGGTGGTATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGAGTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTGCAAATTGCGC‑CTGGCGGTCCGGTCGACCAGGCCATCG‑CCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTG‑AAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAAT‑T‑ACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGCCGGT > NC_000913/2274111‑2274580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |