| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 298,960 | A→C | 8.4% | Y659D (TAT→GAT) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 298,960 | 0 | A | C | 8.4% | 206.0 / 2.5 | 69 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| Reads supporting (aligned to +/- strand): ref base A (59/2); new base C (2/6); total (61/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.19e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTTCCTCCTTAAACCACATCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTA > NC_000913/298727‑299194 | tGTTCCTCCTTAAACCACATCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGAGGTCGGCATCATCCAGGAAAATCACCTCCGGTTTTGGT‑ATATCCGC‑ATGAACCGG‑CACCC‑CATA‑cccc > 2:465050/1‑238 (MQ=255) gctcctccTTAAACCACATCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGACGCGCTCCCCCCCACCAGGCCCAGCTCACCGACACCTTTGCCACTCCTCGGGGAGCATATGGGGCGGGCACCACCCAGGAAAATCACCACCTGTTTTTGG‑AGATCGCC‑ATGAACCGG‑AACCC‑CAAA‑ccccc > 1:762508/3‑237 (MQ=255) cctcctTAAACCACATCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑Cccccccca > 2:414887/1‑237 (MQ=255) caTCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑c > 2:992951/1‑218 (MQ=255) caTCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATc > 2:159583/1‑229 (MQ=255) aTCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCCCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGCGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCCCCTGTTTTGGG‑TTATCCGC‑ATGAACCGG‑CACCC‑CAAA‑CCCCGCCA‑ACTCGGGTTTAAGGa > 1:1216986/1‑239 (MQ=255) ggCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCATCTCCCCGCCACCTTTGCCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATACCCGC‑ATCAACACG‑CACCT‑CATC‑ACCCCCCA‑TATCGTGATTAACaaaac > 1:719129/1‑236 (MQ=255) tATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGTCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAACTCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑ACCCT‑CATA‑CCCCCCCA‑ACACGGGATTAAGGAAGCAGCCCaaa > 1:1205340/1‑239 (MQ=255) gAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGCAGGATATGGGGTCGGTATCATCCAGGAAAATCACATCCTGTTTTGGG‑ATATCCGC‑ATGACCCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGt > 2:414290/1‑239 (MQ=255) agcTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGCTATGGGGTCGGTATCATCCCGGAAAATCACCTCCTGGTTTGGG‑ATATCCGC‑CTTAACCGG‑CACCC‑CATA‑CACCCCCATTATCG‑GGTTAACGAAATGACCCAAACGGtatc > 1:1080468/1‑235 (MQ=255) agTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCAA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGc > 2:780346/1‑238 (MQ=255) gTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGcc > 2:742670/1‑237 (MQ=255) tGGGATAATCCCGTACCCGCATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGGCATCCACCGCCAGCtcctcc > 2:963753/1‑239 (MQ=255) tGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCACCACctcctc > 2:376183/1‑238 (MQ=255) gggATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCtcctcc > 2:7234/1‑238 (MQ=255) tAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCCCCTCCATCAg > 2:410166/1‑239 (MQ=255) aTCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCCTCCGt > 2:272455/1‑238 (MQ=255) tCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGGGATTAACGAAATAGCCCAAACGGGCATCCACCGCCAGCCCCACCACCAGTGc > 1:448649/1‑239 (MQ=255) tCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTAGCCTTCATCGGGGAGGCTATGGGGTCGGTATCATCACGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAATGAGCCCAAACGTCCATCCACCGCCAGCACCCCCacacgta > 1:511439/1‑232 (MQ=255) gTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCCCCTCCATACGTGCcgc > 2:1100558/1‑238 (MQ=255) tACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTTGG‑TAATCCGC‑ATGAACCGG‑ACCCT‑CATA‑CCCCGCCA‑TATCGTGCTTAACGACGTAGCCCAACCGGCCCTCCACCGCCAACTCCCCCACCCGTGCcgcg > 1:948023/1‑238 (MQ=255) tACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGCATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGCTTAACGACGGAGCCCAAAAGGTCATCCACCCCCCCCccctccccccgggccgcc > 1:203861/1‑226 (MQ=255) gTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGCAGAAGCCCAAACAGTCATCCACCGCCAGCCCCTCCACCAGTGCCGCGCCCCTACCCAAAgc > 1:381712/1‑238 (MQ=255) cgcgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGTGCCAAtt > 2:1300233/1‑237 (MQ=255) cgcgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCACTg > 2:1122688/1‑238 (MQ=255) cgcgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATg > 2:791803/1‑238 (MQ=255) cgcgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTACGCCAATg > 2:639931/1‑238 (MQ=255) cgcgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGCCATTGCGCCAATg > 2:961369/1‑238 (MQ=255) cgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGa > 2:787221/1‑237 (MQ=255) cgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGGCATTGCGCCAATAAcc > 2:803126/1‑239 (MQ=255) tGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCCTGCCCATCGTCATTGGGCCCATGACCTg > 2:87427/1‑238 (MQ=255) tgCCGCTCTAACGCCGCAGAGGCCCAGCTCACCGACACCTTTGGCCTTCATCAGTGAGGATATCCGGTCGGGATCACCACGTACAATAACCGCCTGTTTTGGT‑ATATCCGC‑GTGCACCGC‑TACCT‑CCTA‑CCACGCCA‑TACCGTGTTTACAGTAGCAGCCCCAACCGTCATACACAGACGCCCCCCCCCCCATGGCCGCCCCCATGCCCCTAGACATCGCACCaagtccccgcccgtgt > 1:1118443/2‑224 (MQ=255) aGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGCCCTGGCtcccc > 2:682282/1‑234 (MQ=255) cgcTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGtt > 2:933018/1‑239 (MQ=255) ggCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGAt > 2:774201/1‑238 (MQ=255) cAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGTTGCGt > 2:858284/1‑238 (MQ=255) gCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATC‑CCCCGCCA‑TCTCGTGATTAACGACGTAGCCCAACCGGTCATCAACCGCAAGCTCCTCCATCAGTGCCGCCCCACTGCCCACAGTCATTTCGCCAATGACCAGGCCC‑CGCGCAATTTTCGGATTAAggtggcgcccg > 1:298796/1‑230 (MQ=255) cTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGCGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCACTGACCTGGCTG‑CGCGCAGTTTTCGGTTTCAGGATGCGTCCt > 2:316568/1‑238 (MQ=255) ccGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAACCGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGCCATTGCGCCATGGACCGGGCTGCCGCGC‑GTTTTCGGATTCAGGATGCGCCCCgcag > 1:216471/1‑238 (MQ=255) ccGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCGtcagc > 2:1008607/1‑239 (MQ=255) ccGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGACCATGCCCATAGTCATTGCGCCAATAACCCGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGCCCttgagc > 2:1193424/1‑234 (MQ=255) cGACCCTTTGGGCCTTTAGGGGGGAGGATAGGGGGGCGTTATCAACCAGAAAAACCCCCTCCTGTTTGGGG‑ATACCCGC‑ATGACCCGC‑CCCCT‑CATC‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTgcagca < 2:203861/239‑1 (MQ=255) cATCGGGGAGGCTAGTGGGTCGTGATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGCAGGAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCCCGCCCATAGTCATTGAGCCACTGACCACGCAG‑CGCGCCATTATCGGCTTCAGGAGTCGTCCAGCCACACAGAA‑CGCGAgactac > 1:893069/1‑234 (MQ=255) cATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑ACCGAGCAT‑Ac > 2:797883/1‑239 (MQ=255) gaTATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCaaa > 2:982501/1‑105 (MQ=255) atGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGa > 2:271403/1‑166 (MQ=255) cGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGGGCCACGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGGTTCCTGCAGCACACCA‑ACCGACCAC‑ACCCCGGCACCGAACtttcccc > 1:648079/1‑234 (MQ=255) ggTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCCGCTCCTCCCTCAGTGCCGCGCCCATGCCCATAGTCCTTGCGCCACTGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACCCAC‑CGAGAGCAT‑ACCCCGGCCCCCAACTTCTccc > 1:623318/1‑238 (MQ=255) ggTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGCATTCAGGATGCGTCCTGCAGC‑CACACAAGCGAGCAT‑ACGCCGGACCCGAACTTCAcca > 1:304148/1‑237 (MQ=255) ggTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGAGCCCATACCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGAGCCGCCCTCCAGCACAAAC‑A‑CGAGCATAAAGCCGGACCGCAACTTCCCCCg > 1:342181/1‑239 (MQ=255) gtaccccccAGAAAAACCCCCCCCTTTTTGGGG‑AATCCCGA‑ATAAACCGG‑CCCCT‑CATC‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCg < 2:381712/231‑1 (MQ=255) cttccaacacggaaacaccacccctCTTTTGGG‑AATCCCAC‑AAGCACCCG‑CCCCTCCACA‑CCCCGCCA‑TATCGTGACTAACGCAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGAGTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCg < 1:639931/217‑1 (MQ=255) caaccaggaaacccccccccgTTTTGGGAATTCCCGA‑ATGACCCGG‑CCCCT‑CATC‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTcgcg < 2:448649/219‑1 (MQ=255) atcCAGAAAAACCCCCTCCTGTTTGGGG‑TTACCCGT‑A‑AAACCGGCCACCT‑CATC‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCgcgc < 2:719129/239‑1 (MQ=255) tcCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGCACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCACTGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATCCGTCCTGCACCACACAC‑AGCGAGCTT‑ATGCCGGACCCGAACATCTACCGCCGCGCt > 2:920573/1‑239 (MQ=255) tcCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCGGTTTTCGGATTCAGGATGCGTCCTGCAGCACCCAC‑AGCGGGCAT‑CCGCCGGACACGAACTTATCCCGTCCCGCt > 2:884693/1‑239 (MQ=255) tcCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCt > 2:60418/1‑239 (MQ=255) tcCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGCCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACCCAC‑AGCGGGCAT‑CCGCCGGACCCGAACTTCTcccataccgct > 2:1230754/1‑231 (MQ=255) tcCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGCCATCCACCCCCAGCTCCTCCATCATGGCCGCGCCCATGCCCCTAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGGTTTCGGATTCCGGATGCGTCCTGCAGCACACCC‑AACGAGCAT‑ACGCCGGACCCGAACATCTCCCCCCgcgcc > 1:983572/1‑238 (MQ=255) ggAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTTTCCCGTCCGGCTTTGc > 2:196104/1‑239 (MQ=255) gAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATACCCATAGTCATTGCGCCAATGCCCTGGCTG‑CGCGCACGTTTCGGATTCATGATGCGTCCCGCACCACACAC‑ACCGAGCAT‑ACGCCGGACCCATACTTACCCCCCCGCGCtccac > 1:1044038/1‑234 (MQ=255) aTCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGCTTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGc > 2:770269/1‑238 (MQ=255) tCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGcacaca > 2:108881/1‑189 (MQ=255) ttttGGG‑GTAACCCCAATGACCCGC‑CCCCC‑TATC‑CCCCGCCA‑TACCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCcaca < 2:304148/239‑1 (MQ=255) ttGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCCCCACaaa > 2:1069508/1‑238 (MQ=255) tCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTAAGGATGCGCCCTGCAGCCCCCAA‑AGCTAGCAT‑ACCCCGGCCCCGAACTTCCCCCGTCCCGCTATGCACCCCGACCTCCCAAAAAAACCCGGc > 1:869143/1‑239 (MQ=255) gcacccccT‑CACC‑CCCCGCCA‑TATCGTGATTAACCAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc < 2:104747/233‑1 (MQ=255) cGG‑CACCT‑CATACCCCCGCAC‑TACCGTGATTAACGAAGTCGCCCAAACGGTCATCCCCCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGAc < 2:298796/239‑1 (MQ=255) cATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGCTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑ACCGAGCAT‑ACGCCGGACCCGAACTTCTCACTTCACGCTATGCACGCCGACCTCCCCAAAATGCCCGCCAAAGGTCGACTTCTggaa > 2:73903/1‑236 (MQ=255) | TGTTCCTCCTTAAACCACATCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGG‑ATATCCGC‑ATGAACCGG‑CACCT‑CATA‑CCCCGCCA‑TATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTG‑CGCGCAGTTTTCGGATTCAGGATGCGTCCTGCAGCACACAC‑AGCGAGCAT‑ACGCCGGACCCGAACTTCTCCCGTCGCGCTATGCACGCCGACCTCCACAAAATGCCCGGCAAAGGTCGACTGCTGGTA > NC_000913/298727‑299194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |