| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,560,493 | G→A | 8.0% | pseudogene (111/149 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,493 | 0 | G | A | 8.0% | 200.1 / 5.2 | 80 | pseudogene (111/149 nt) | glpR | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| Reads supporting (aligned to +/- strand): ref base G (40/31); new base A (4/3); total (46/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCCGTTCGCCATCGACATCCCAAACAAATCAAAC > NC_000913/3560264‑3560729 | cTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGGTAAACAGCGTCGAGCCATTGGTGATTTGCTCCGCCCCTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAATGCAGCGCGGCACCCCCTTAATGGCCAAGGATCAGGGTTTTCTCCCCCAG‑CCACATGAGGCCGGGGCGacaatt > 1:475927/1‑234 (MQ=255) tgATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGACCAGGGTTTGCTCCGCCAG‑CTCATTGAGGGCGCCGAGAAAAGtggg > 1:823013/1‑236 (MQ=255) gAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGCCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGCTTTGCTCCGCCAG‑GCCATTGAGGTCCCGGCGAATAGCCTGCggcc > 2:698382/1‑237 (MQ=255) aGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGcg > 2:382664/1‑238 (MQ=255) gtgcgtgcGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGTGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCACCGCCGCACCGCCATTATGGCGCAGGATAAGGTTTGTGTCCGCCAC‑CCCCTTTAGGCCGCGGAGaaagggcgcggggcggagg > 1:405315/1‑222 (MQ=255) gcgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTCATGGCGCCGGAACCGGTTTTTCTCCCCCAG‑CCCCTTGAGGGCCCGGCGAAAAGTCTGCGGGGCGACggg > 1:9611/1‑238 (MQ=255) cgtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCCTTACGGTCGCGGCGAATAGTCTGCGGGCTGACGgag > 2:692735/1‑239 (MQ=255) tACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTAGAGCCGTTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTAT‑TTTTCTTCGGTCTGGGCGGCCTTGCGATCGTGCCACGCCGGGTTGACCGCACTGGCAGGCCGCGTCACACCGCCATCATGGCGTAGCATCCAGTTTTGATCGCCTCG‑CCCATTGAGGTCCGCGCAAACAGTCTGCCGGGCGACgggggaacat > 1:1204010/1‑230 (MQ=255) aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGCTGGCGCAGGATCAGGTGTTGCTCCACCAG‑CACATCGAGGTCGAACAGAACAGCATGCGGCCTCACGGAaaaagggcc > 1:289514/1‑234 (MQ=255) aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCTCCAG‑CTCATTGAGGTCGCGGCGAAAAGGCTGCGGGCGGAGGGAGAAATGct > 1:178175/1‑238 (MQ=255) aCCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCAGCGAACAGGCTGCGGGATGCCGGGGAAATGcg > 1:929405/1‑237 (MQ=255) tCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCa > 2:601369/1‑238 (MQ=255) ccGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGCCGGAGAAATGCTCTACCAg > 2:154260/1‑238 (MQ=255) cccattatCGATAAACAGCGTCGAGCCTTGGGGGATTGGCCCCGCCACTTGGCGGGCGATGCGCTCT‑TTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa < 2:178175/233‑1 (MQ=255) atatCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACGGAc > 2:402131/1‑239 (MQ=255) gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCCCTACCAGCCCTTCGGTACTGCCATaa > 2:538673/1‑238 (MQ=255) aaaccgtgtggatcctgtGGGGTTTTCCCCCGCCGCTGTGCGGGCGGTGC‑TTCTGTTGTCTTCGTTCGGTGTGCTCTTGCGCCGGTGCCCGGGCGTGTCACCCGAACGGTAAGCCGGCGCCTCCCCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct < 1:302034/222‑1 (MQ=255) actgCGTCGTGCCATTCGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGAAAGCGCCTCACCGCCATGAGGGCGACGGATCAGGTTTTGCTCCGCCGG‑CTCATTGGGGTCGCGGCGAAGAGTCCGCGGGCTGCACGCGAAAGTGTCTACACGGGCTTCGGTACGAACATaaaacagc > 1:212398/4‑233 (MQ=255) cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGtt > 2:512369/1‑239 (MQ=255) cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCGGtt > 2:372480/1‑239 (MQ=255) tCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCTAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAACAGTCTGCGGGCGTACGGGGAAATGCTCTCCCCGCCCTTGGGCACTGACATAACCCGCCCGTTTa > 1:929590/1‑239 (MQ=255) tCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAAAGGGCTCGGGGCTTGCGGGGGAATCCTACACCAGCCTTTCGGGGCTGCCACACCCCTGCTGTTTa > 1:886258/1‑239 (MQ=255) cGAGCCTTTGGGGTTTGCCCCCGCCACTTTGCGGGCGATGCGCTTT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTa < 2:823013/238‑1 (MQ=255) atttGGGGTTTTGCCCCGCCACTTGGCGGGCGATGCGCTCT‑TTTTCTGCGGTCTGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGt < 2:262897/237‑1 (MQ=255) ttgggtttttttCTCCTCCCCTTTGGGGGCTGTGGCCTTT‑TTTTCTTGTGGCGGGGTGGCCTGGCACTCGTGCCAGGGGGTTTTAACCAAAGTGGAGGGCAGCCCCGCACCGCCATGATGGCGTAGGATGAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:538140/231‑1 (MQ=255) gttGGGGTTTTCCCCCGCCATTTGGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCAGGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 2:759847/238‑1 (MQ=255) ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGACGGCCGCGCCGCACCGCCATGTTGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGTTCGCGGCGAATAGCGTGCGGGCTGACGGAGAAATGCTTTAACAGCCCTTCGGTACTGCCTTAACCCCGCGGtttcgccatcac > 1:262897/1‑230 (MQ=255) ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTCGGAACTGACATAACCCTGCTGTTTAACAAGTTc > 2:538140/1‑239 (MQ=255) ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCAGTTc > 2:1293575/1‑239 (MQ=255) tttggccccggctttttGGGGGCGTCGCACTTT‑TTTTCTTCGGTCGGGGTGGCCTGGCGATCGTCCCACAGCTTGTTAACGGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataa < 2:10067/224‑1 (MQ=255) aTTTGCCCCGCCACTTTGCGGGCGATGCGCTTT‑TTTCCTTCGGTCTGGGTGGCTTTGCGATCGTGCCACGGCGGGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataa < 2:1139600/238‑1 (MQ=255) tttGCCCCGCCCTTTTGCGGGCGATGCGCTTT‑TTTTCTGCGGTCTGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataata < 2:164521/239‑1 (MQ=255) gccccGCCCTTTTGGGGGCGATGCGCTCT‑TTTTCCTCGGTCTGGGTGGCCTTGCGATCGGGCCCCGGGGTGTTACCCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCg < 2:252667/236‑1 (MQ=255) gCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGCAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGACGCGGCGACTAGTCTGCGGGCTGACGGCGAAATGCTCTACCAACTATTCGGTACTGACATAAACCTTCTGTTTAACCAGTTAGATAATAACg > 1:244871/1‑239 (MQ=255) cTCCGCCACTTTGCGGGCCAGGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTGTCTCAGCCAG‑CTCATTGAGGGCGCAGAGAAAAGTCTCCGGGGGGACGGAGAAATGCTCAACCTGTCCGTAGGTATTAACTAAACCCTGCTGTTTAAAAAGTTTAATAAAACCGt > 1:263506/1‑239 (MQ=255) ccGCCACTTTGCGGGCGATACGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATTGCGCAGGATCAGGTTTTGCTCCGCCAG‑CCCTTTGAGGACGCGGCGAATCGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCTCTTCGGACCTGTCATAACCCGTCCTTTTAACCACtttcgaaaaacccttt > 1:222488/1‑225 (MQ=255) cccccTTTGGGGGGGATGCGCTTT‑TTTTTTTGGGTTGGGGTGGCCTTGGGATCGGGCCAGGGGGTTTTAACCGAACTGGAAGGCAGGGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgtg < 2:9611/235‑1 (MQ=255) cgttggcggggctggcccttt‑ttttCTTGGGGCGGGGTGGCCTTGCGGTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑Cg < 2:929405/219‑1 (MQ=255) cggggggatggctttt‑ttttCTCCGGTCGGGGTGGCCTGGCGATCGTGCCCGGGCGTGTTAACCAACCTGGAAGGCAGCGCCCCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTtgtg < 2:121088/224‑1 (MQ=255) ttGCGCTTT‑TTTGCTCGGGTTGGGGGGGCCTTGCGATCGTGCCACGGGGTGTTAACCGAACGGGAAGGCGGCGCGGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGtgtttgtt < 2:475927/237‑1 (MQ=255) tGCGGTCT‑TTTTCTCGGGTCGGGTTGCCCTGGCGATCGTGCCACGGGGTGTCAACCGACTGGGAAGGCAGCGCCGGACCGGCATGATGGCTCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTc < 2:273168/239‑1 (MQ=255) gcgcTTT‑TTTTCTGCGGTCTGGGTGGCATGGCGATCGGGCAACGGCGTTTTAACCAACCTGGAATGAAGCGCGCCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCa < 2:1137506/239‑1 (MQ=255) ttttCTTGGGCTGGGGTGGCCTTGGGTGCGGGCCCGGGTGTGTTAACCGAACTGGAGGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATaa < 2:886258/239‑1 (MQ=255) tgcggtggtggTGGCCTGGCGCTCGGCGCTGGGCGTGTTGACCGCACCGGAAGGCGCCGCGGCACCGCCATGATGGCGCAGGAGCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATccc < 1:17469/230‑1 (MQ=255) gTCTGGGTGGCTTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc < 2:328899/185‑1 (MQ=255) gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGa > 2:299153/1‑239 (MQ=255) ccTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGTTGACGGAGAAATGCTCTACCAGCCCTTCGGTCCGGACATAACCCTGCTGGTTAACCAGTTCAata > 1:328899/1‑185 (MQ=255) ccTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCCGCTCTTCGGGCCTGACTAAACCCTGCGGTTTCACCAGTTCGATAATCCCTTTTTGC‑CTCTGtgtttgt > 1:140054/1‑209 (MQ=255) tGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATACAACCGTTTGGG‑CGTTGTGTTTGTTTCATTTTTAAATCACCGGAATTTtttttgttt > 1:1262506/1‑239 (MQ=255) cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGGGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttttc > 2:903620/1‑239 (MQ=255) gtttaaggaggcgggttttAACCGGAGTGGAAGGGGGCGCCCCACCGCCATGGTGGCGGAGGATCAGGTTTTGCTCCGCCAG‑CTCCTTGAGGTCGGGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTTTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttttcg < 1:302410/222‑1 (MQ=255) gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCCTTTTTAAATCCCTGGAATTATTTTCGTTTTCGCGCa > 2:888663/1‑239 (MQ=255) aCGGCGTTTTACCCGAACGGGAAGGGCGCGCTGGACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAg < 2:1111124/239‑1 (MQ=255) gtggtaaaCCGAACGGGAAGGCAGGCCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGa < 2:929590/232‑1 (MQ=255) tgtaacccGAACGGGAAGGCAGCCCGGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 2:805159/232‑1 (MQ=255) tgtTAACCGAACTGGAAGGCAGCGACGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGAGGCGAACAGTATGCGGGCGGCCGGAGAAATCAACTACCAGCTATTCGGGACTGACTGAACCATGCTGTTTAACCACTTCGATAAAACC‑TTTTGACCATTGCGTTGGTGTCATTTTTAAAACCATGGACTAATTTTAGTTTTCCCGCAtgaagtgatta > 1:131492/1‑229 (MQ=255) gtttAACCGAACTGGAAGGCAGCGCCCGCCCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 2:156276/236‑1 (MQ=255) attgcaggcccccccccccccGCCATGATGGCGCAGGATCAGTGTTTGCCCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGTTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc < 1:402131/220‑1 (MQ=255) acgggAAGGCACGCCCCCTCCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc < 2:405315/236‑1 (MQ=255) aCTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGc > 2:302410/1‑224 (MQ=255) aCTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGcc > 2:1186387/1‑239 (MQ=255) cgccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCAGTTCGATAATACCGATGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGTGCGAATCAACAAAATCCATCGCTAAAcac > 2:299936/1‑237 (MQ=255) cgccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAAt > 2:149337/1‑179 (MQ=255) cgccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAAt < 1:149337/179‑1 (MQ=255) ccgcACCGCCATGATGACGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCACGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCACTTCGGTACGGACAGAACCCTGCTGTTTACCCAGTTCGAAAATCCCGTTGTCA‑AGTTTCGTTTGCTTCATTTTAAAATCCCTGGAATAATTTTCGGTTTCGCGAATTGCGCCAAATAaaaaaaaaaacccttaacacaaa > 1:110807/1‑222 (MQ=255) gttgGGGCAGGATCAGGTTTTGCTCCGCCAG‑CGCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGACAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCAATAATGCCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGc < 2:271968/237‑1 (MQ=255) ggtgggtgaGGATCAGTTTTTGCTCCGCCAA‑GTCATTGAGGTCCCGGCGAATAGGCTGGGGGCTGACGTAGAAATGCTCTTCCAGCTCGTCGGTACTGCCATAACCCTGCTTTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGTAATTATTTTCGTTTGCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGc < 1:512369/231‑1 (MQ=255) ggtgggggaGGTTCAGGTTTTGCCCCGCCAGTCTC‑TTGGGGTCGCGGCGAATTGTCTGCGGGGTGAAGGAGAAATGCTCTACCAGCTTTTCGGTTCTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTGCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGc < 1:538673/231‑1 (MQ=255) gggtgcgcGGGGTCGGGTTTTTCCGCGCCAG‑CCACTTGGGGTCGCGGGGAATAGTCCGCGGGCTGCCGGGGAAATGCTCTGCCATGTCTTCGGTACTGCCATAACCCTGCTGTTTAACCAGTTCGATAATTCCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCgac < 1:372480/235‑3 (MQ=255) atgGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTTTAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCg > 1:797806/1‑239 (MQ=255) cAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTTA‑CGTTTTGTTTGTTTCTTTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAACCCATCACTAAACCCCCGGCTAACCCGGCGAtgtgg > 1:685899/1‑238 (MQ=255) ggTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCCGGTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCACCAAAAGCCATCGCTAAACCCCCGGCTAACCCGGCGATGTCGGCTCCGt > 2:694592/1‑238 (MQ=255) ggTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAAAAATGCTCAACCAGCTCTTCGGTACTGCCATAACCCTGCTGTTTAACCAGTTAGAGAATACCGTTGTGA‑CGTTGTGTTTATTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCCTGAAGCGAATCACCAAAAGCCATCGCTAAACCCAAGGTCAACACGGCAGAGTGTGCTCCGt > 2:365501/1‑238 (MQ=255) ttttGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCCGt < 2:797806/236‑1 (MQ=255) tGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGACTGACGTAGAAATGCTCTAACAGCTCTTCGGTACTGAAATAACCCTGCTGGTTAACCAGTTCGATAATACCGTTTCTA‑CGTTGTGTTTGTTTCATTTACAACTCCCTGGAATTATTTTAGGTTTCGCGCATTGATCGAATCAACAAAACCCATTGCTACACCAACGCCTCACCCGGCGACGTGTGCACCCGTCGca > 1:591295/1‑237 (MQ=255) gCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGCGAACTGCTCTACCAGCTCTTCGGTACGGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCTTTTATAATTCCCTGGAATTATTTTCGTTCTCGCGCTTTAGGCGAATAAACAAAAACCATCGTCAAACCCACGCCTACCCCAGGAATGTCTGCCCAGTTCCCCAt > 1:409318/1‑239 (MQ=255) ccAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑Cg > 1:942660/1‑115 (MQ=255) ccAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑Cg < 2:942660/115‑1 (MQ=255) ccAG‑CTCATTGAGGTCGCAGCGAATAGTCTGCGGGCTGACGGGGAAATGCTCTACCAGCTCTTCGGGACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGGGA‑CGTTGTGTTTGTTTCATTTAT‑AATCCCTGTAATGATTATCGTTTTGACGTCTTGAGCGAAGCAACAACACCCATCGCTAAACCCACGGCTACCCCCGCGAggttggtcacactcccccgacacac > 1:878072/1‑216 (MQ=255) cATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCCGTTCGCCATCGACATCCcaaa < 2:1262506/239‑1 (MQ=255) cggcgAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCCGTTCGCCATCGACATCCCAAACAAATCAAAc > 2:976564/1‑238 (MQ=255) | CTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCT‑TTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAG‑CTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA‑CGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTCCGTTCGCCATCGACATCCCAAACAAATCAAAC > NC_000913/3560264‑3560729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |