New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1096961 =	48 (1.190)	3 (0.110) +GGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT	3/190	4.0	8.6%	intergenic (+132/+604)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	1097243 =	NA (NA)					intergenic (+414/+322)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG  >  NC_000913/1096820‑1097099                                                                                                                                              |                                                                                                                                           taataaGTGAGGAAGTGATAGGAAGTGACCGGAGAAAATAGAAATGGTCTGTACTCTCTTGCGCATTTTGATTGTTGAGTTAGAAACCGGACAGATGATGGGCACGATTTCGCCCCGCCCTAACAGACGTGGGCGGAGGGAcc                                                                                                                                           >  1:351962/1‑143 (MQ=255)     aaattagaaaGTGATAGGAAGTGACCCGATCATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTTACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGTCCTAACAGACGTGGGCGGGGGCACCCgtt                                                                                                                                       <  1:121951/135‑3 (MQ=255)     aaGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCggg                                                                                                                                       >  1:506471/1‑142 (MQ=255)       gTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGgtgt                                                                                                                                     <  2:677884/143‑1 (MQ=255)               tttaTAGGAAGTGACCATATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAata                                                                                                                             <  1:55583/140‑1 (MQ=255)                 gATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGGGGGAGCACGCGGGGTGTGCACtata                                                                                                                           >  1:339837/1‑143 (MQ=255)                 gATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAAtata                                                                                                                           <  2:357256/143‑1 (MQ=255)                    aGGTAGTGACCAGTTAATACATATATGTTCTGTACTCTCTTGCGCATTTTGTTTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGa                                                                                                                        <  2:62136/143‑1 (MQ=255)                    aGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGa                                                                                                                        >  2:193584/1‑143 (MQ=255)                      gAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGaaa                                                                                                                      >  2:504568/1‑143 (MQ=255)                      gAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGaaa                                                                                                                      >  2:345404/1‑143 (MQ=255)                          ggACTAGAGACTACATATAGGTGCTGGACTCTGTTGCGGATTTGGATTGTTGACTGAGTAACCAGAGAGTTGATGGGCAAGATTTCCCCACGCGCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATaaaaaaaaaaaa                                                                                                                  <  1:442606/142‑1 (MQ=255)                          ggACAAGAGAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGaaaaaaa                                                                                                                  <  2:674725/142‑1 (MQ=255)                              cAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGCGCACCCGGTGTGTGCAATATACGAAAAAAAAGcc                                                                                                              >  1:66888/1‑143 (MQ=255)                               agactataCATATACGTTCTGTTCTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACCGTTGATGTGCACGATTTCCCCTCTCCCTAACAGACGTGGGCGGCGGCACCCTGTGTGTGCAATATACGAAAAAAAAGccc                                                                                                             <  1:551775/138‑1 (MQ=255)                               aGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGccc                                                                                                             <  1:305323/143‑1 (MQ=255)                                       cATATATGTGTTGTACTATCTTGCGCATTTTGATTGTTCATTGAGTAATCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGATGGGGTCACCCGGTGTGTGTAATATACGAAAAAAAAGCCCGTACTTTc                                                                                                     <  1:567342/143‑1 (MQ=37)                                             tGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTGCTTTCGTACgg                                                                                               >  1:37708/1‑142 (MQ=255)                                                   gtactagcgtGCGCATGGTGAGTGTTGACTGAGTAACCAGACAGTTGATGTGCACGAGTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCtctt                                                                                         <  1:278251/134‑1 (MQ=37)                                                      ctctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt                                                                                      <  1:557627/143‑1 (MQ=255)                                                             gcgcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTATTCTTTAAatat                                                                               >  1:303233/1‑143 (MQ=255)                                                                cATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATCCGACACAAAAGCCCGTACTTTCGTCCGAGCTCTTCTTTAAATTTgga                                                                            >  2:70992/1‑142 (MQ=255)                                                                  ttttAATGGTCGACTCAGTAACCAGATAGTTCATGTTCACGATTTCCCCCCGTCCTAACAGACGTGGGCGGTTGCACCCGTTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGTCgg                                                                          <  1:47678/143‑1 (MQ=18)                                                                   tttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGCACAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGAGGt                                                                         >  2:640509/1‑143 (MQ=255)                                                                   tttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGt                                                                         <  1:345404/143‑1 (MQ=255)                                                                     tgtttttggctgaaGTATCCAGACTGTTAATGTGGAGGATTCCCCCACGCCCAAACAGACGGGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa                                                                       <  2:632502/130‑1 (MQ=17)                                                                        ttgttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGAGTCTTCTTTAAATATGGCGGTGAggg                                                                    >  1:192637/1‑143 (MQ=255)                                                                        ttgttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAagg                                                                    >  2:557184/1‑143 (MQ=255)                                                                         tgttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAATAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggg                                                                   <  2:303233/143‑1 (MQ=255)                                                                           ttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGAGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTACGTACGAGCTCTTCTTTGAATATGGCGGTGAcggggg                                                                 >  1:203396/1‑143 (MQ=255)                                                                                tGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGCGAGGGGGGGATTg                                                            >  1:331140/1‑143 (MQ=255)                                                                                 gattAACGAGACAGTGGATGTGCACCATTTCCCCACGCCCGAACAGACGTGGGCGGGGGCTCCCGGTGAGTGCACTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa                                                           <  1:348964/140‑1 (MQ=18)                                                                                 gAGTCACCAGACAGTTGATGTGCACGTTTTCCCGTCGCGCGAACAGACGTGGGCGGGGGCTCCCTGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa                                                           <  1:387073/143‑1 (MQ=18)                                                                                 gAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGAGGGGAATGa                                                           >  2:431932/1‑143 (MQ=255)                                                                                         aGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGCGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttc                                                   >  2:465713/1‑143 (MQ=255)                                                                                                              tCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                              >  2:182576/1‑143 (MQ=255)                                                                                                               ccccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTACAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGTCTCGCTTCGCACACCCTGAGGGGAgaaaac                             >  2:722547/1‑138 (MQ=17)                                                                                                               ccccTCGCCCTAACAGAAGTGGGCGGGGGCACCTGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGc                             <  1:568121/143‑1 (MQ=255)                                                                                                                  cTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTCCAATATACGAATAAAAAGCCCGTACTTTCGTACGAGCTCTTCGTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                          <  2:21625/143‑1 (MQ=255)                                                                                                                         tAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                   <  1:647613/143‑1 (MQ=255)                                                                                                                          aaCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTc                  >  2:337831/1‑143 (MQ=255)                                                                                                                           ggtggggTGGGCGCGGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACGTTCGTACGAGCTCTTCTTTAGATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCa                 <  1:70992/137‑1 (MQ=11)                                                                                                                             aGACGTGGGCAGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTCCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGAGCAGCCCGCTCACCGCGTTCCCg               >  2:126201/1‑143 (MQ=14)                                                                                                                                   gggCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCCGCCCGCTCACTGCGTTCAGGGTCtct         >  1:242887/1‑141 (MQ=255)                                                                                                                                    ggCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCCCTGCGTTCACGGTCTGTc        >  2:32546/1‑143 (MQ=38)                                                                                                                                       gggggCACCCGGGGTGTGCAATATACGAAAAAAGAGCCCGTACTTTCGTACGAGCTCTTCTTTGAATATGGCGGGGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCaa     <  1:524214/143‑1 (MQ=255)                                                                                                                                        ggggCACCCGGTGTGTGCAATCTACGAAAAAAAAGCCCGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc    <  1:327546/143‑1 (MQ=21)                                                                                                                                          ggCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTACGTACGAGCTCTTCTGTAAATGTGGCGGTGACGGGGGGGTTGACTCGCGTCGCCCGCCCTGCGGGCAGCCAGCACAACGCGTTCACGGCCTGTCCAACTg  >  1:341795/1‑143 (MQ=11)                                                                                                                                              |                                                                                                                                           TAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG  >  NC_000913/1096820‑1097099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.