New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1774019 =	49 (1.210)	5 (0.130)	5/268	4.4	10.0%	coding (231/867 nt)	ydiB	quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding
	?	NC_000913	1774066 =	44 (1.150)					coding (278/867 nt)	ydiB	quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAGCGGGATTGCCATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGCCATTAAAGAGAGCGGTTTTGATATCAAA  >  NC_000913/1773882‑1774157                                                                                                                                          |                                                                                                                                           aaaGCGGGATTGCCATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGCATTTGTGAGACGATTCCGAAAAAACAAGTGGAGTGTGAATATATtga                                                                                                                                       >  1:512554/1‑143 (MQ=255)  atgctggATTGCCATTTATCTATATGTCTTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAATAGCCCTTAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTtgat                                                                                                                                      <  1:196429/138‑1 (MQ=255)    gCGGGATTGCCATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTTTCGATGCCGAACAAACAACAAGAGAGTGAATAAGAtgatga                                                                                                                                    >  2:595845/1‑143 (MQ=255)      gggAGTGCCATCGACCGACACGGCCCTCGAAGCGGACACCGACAGCTTCCCTGCAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAAt                                                                                                                                  <  2:539862/143‑1 (MQ=255)              cATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAACAGCACTCTCAATGCGCGGGACTGGTGCGTCGGTGCCGAACAACCACCTTGCGTGTGAATATTATGATGAAATAACACCa                                                                                                                          >  2:268611/1‑143 (MQ=255)              cATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAGCTGGTGTATCGATGCCGCTCGTGTCACTGGCGTGTGTCTATGTTGATGAGTTaaaaaca                                                                                                                          >  2:228928/1‑138 (MQ=255)              cATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACAGGCGTGTGAATATGTTGATGAATTAccacca                                                                                                                          >  1:216606/1‑143 (MQ=255)              cATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGCAACTGGCGTATCGATGCCGAACAAACACCTACCAGGGGAAGCTGTTGATGAATTAACACCa                                                                                                                          >  1:471241/1‑143 (MQ=255)                      tataTGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGGCCGCAAAACGCCCGGAACAGGTGTATCGATGCCGAACAAACAACTGGCGTGAGAATATGTTGATGAATTAACACCAGCTGCCaa                                                                                                                  >  2:693135/1‑143 (MQ=255)                       ttatGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCaaa                                                                                                                 <  1:7516/142‑1 (MQ=255)                       atatGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACAAGCTGCCaaa                                                                                                                 >  1:302995/1‑143 (MQ=255)                         atGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACt                                                                                                               >  1:371505/1‑143 (MQ=255)                         atGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGACGAATAAACAACAGCAACCAAAca                                                                                                               >  2:220032/1‑142 (MQ=255)                              cTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACtggtgg                                                                                                          >  2:242884/1‑143 (MQ=255)                                 cGAAGTGGATAACGATAGCTTTCCTGGAGCAAATGAAGGAATAAAAAGCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGAAGAATTAACAACAGCTGCCAAACCGGAggggg                                                                                                       >  1:395351/1‑143 (MQ=255)                                              gATAGCTTTCCTGGAACAAATGAAGGATTAAAAGCCCTCAAAATACGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCAt                                                                                          >  1:52272/1‑143 (MQ=255)                                                       ccgtgggCAATTGAAGGACTAAAAGCCCTGAAAACGCGCGGAACTGGTGGATCGATGCCGAACAAACGCCTGGCGCATGAATATGTTGTTGAATTAACACAAGCGGCCAAACTGGTGGGGGCCATCAACACCATCGTTAatga                                                                                 <  2:655058/137‑1 (MQ=255)                                                        cTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACCCCAGCTGCCAAGCTGGGGGGGTCCATCCACACCATCGTTaataat                                                                                >  2:122032/1‑143 (MQ=255)                                                         tGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACACACAACTGGCGTGTGAATATGTTGCTGACTTAACACCAGCTGCCAAACTGATGGGGACCATCAACAACGTCGTTAatgatg                                                                               >  2:396918/1‑143 (MQ=255)                                                              cAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCCGCTGCCAAGCCGGTGGGGGCCATCAACACCATCGTTAATGATGATGGc                                                                          >  2:227812/1‑143 (MQ=255)                                                                 ttGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATAGCTAt                                                                       >  2:203068/1‑143 (MQ=255)                                                                      ggATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCg                                                                  <  1:455678/143‑1 (MQ=255)                                                                      ggATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGCTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCg                                                                  >  2:532348/1‑143 (MQ=255)                                                                        aTTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTg                                                                <  2:371505/143‑1 (MQ=255)                                                                         ttAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTgg                                                               >  1:578284/1‑143 (MQ=255)                                                                             aaGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCtat                                                           <  2:395351/143‑1 (MQ=255)                                                                                  cTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGGATTATCACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAacac                                                      >  2:518517/1‑143 (MQ=255)                                                                                  cTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGCCCCTCAACACCAACGTTAATGATCATGGCTATCTGCGTGGCCATAacac                                                      >  1:588281/1‑143 (MQ=255)                                                                                   tCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGGGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACAcc                                                     <  1:459812/143‑1 (MQ=255)                                                                                   tCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGGGTGAATATGAGGATGAATTAACACCAGCTGCCAAACTGGGGGGGGCAATCAACACCAGCGATAATGATGATGGCCATCTGCGAGGCGATAACAcc                                                     >  1:72196/1‑143 (MQ=255)                                                                                    taatttgtgcgcAAGTGGTGGATCGATGCCGAACAAACAACTGGCGTGTTAATATTTTGATGAATTAACACCATCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCg                                                    <  1:170210/135‑1 (MQ=255)                                                                                        aTGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATCATGATGGCTAACCGCGAGGCTAcaccacgcccgg                                                >  1:600398/1‑137 (MQ=255)                                                                                             gagAACTGGTCTAGCGCTGCCCAACACACAACTGGCGTGTGAATATGGTCAAAAATCACTACCATCTCCCAAACTCGTTGCGGCCATCAACACCATCGTTAATGATTATGGCTATCTGCGTTGCTATAACACCGACGGCACgg                                           <  1:433409/141‑1 (MQ=255)                                                                                                aaCTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACACACGCCACGGGcc                                        >  1:687222/1‑143 (MQ=255)                                                                                                   tGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCACACTGGTGGGGGCCATCACCACCATCGTTAATGATGATGGCTATCAGCGTGGCTAAAACACCGACAGCACGGGACata                                     >  2:576967/1‑143 (MQ=255)                                                                                                   tGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGAGGGCTATCTGCGTGGCTATAGCACCGACGGCATGGGCCata                                     >  2:576805/1‑143 (MQ=255)                                                                                                        tATCGATCCTGAACAATCAACTGTCGGGTGATTATTTTTATTAATTAACACCATCTGCCAAACTGGTGGGTGCCATCAACACCATCGTTATTGATGATGGCTATCTGCGTGTCTATAACACCGACGGCACGGGCCATATTcgc                                <  1:61581/143‑1 (MQ=255)                                                                                                           cgaggacGAACAAATAACGGGGGTGTGAATATGTTAATGAATTAAAACCAGGTGCCAAACTGGTGGGGGGCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGcc                             <  1:227189/137‑1 (MQ=255)                                                                                                                   ggcaagcgacTGGCGTGTGGATAGGTTGATGATTTAACACCAGCTGCCAAACTGGTGGTGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGCCATTAAaga                     <  1:725097/135‑1 (MQ=255)                                                                                                                      aaacaaCTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGCCATTAAagagag                  >  2:135132/1‑143 (MQ=255)                                                                                                                      aaacaaCTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGCCATCACagagcg                  >  2:500718/1‑141 (MQ=255)                                                                                                                       aacaacTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACGCCGCCGGCACGGGCCATCTCCGCGCCtttccgctgtgc                 >  2:213290/1‑134 (MQ=255)                                                                                                                        tcgacgtgCGTGTGAATATGTTGATGAATTAACACCATCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGCCATTAAAGAGAGCg                <  1:242884/136‑1 (MQ=255)                                                                                                                            gtGGAGTGTGAATATGTAGATGAATTAATACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCCGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGCCATTAAAGAGAGCGGttt            <  2:573835/142‑1 (MQ=255)                                                                                                                             tGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAAGGATGATGGCTATCTGCGTGGCTATAACACCGACGTCACGGGGAATATTCGGCCCATAAACGAAACCGGtttt           >  2:501851/1‑143 (MQ=255)                                                                                                                               gCGTGTGAATATGTTGATGAATTAGCACCAGCTGCCGATCTGGTGGGGGCCATCAACACCATCGTTAATGATAATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGTCATTAAAGAGAGCGGTTTTGa         <  1:220032/143‑1 (MQ=255)                                                                                                                                 gtgtGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATCTTCGCGCCCTTAAGGAGAGCGGTTTTGata       >  1:231076/1‑143 (MQ=255)                                                                                                                                 gtgtGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGAGATAACACCGACGGCACGGGCCAAATACGAGCCAGCAAAGAGAGCggcgtggatc       >  1:528290/1‑135 (MQ=255)                                                                                                                                      aaTATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACCGCACGGGCCATATTTGGGCGATTAAAGAGAGCGGTATTGATATCaaa  >  2:22520/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                           AAAGCGGGATTGCCATTTACCTATATGGCCTTCGAAGTGGATAACGATAGCTTTCCTGGAGCAATTGAAGGATTAAAAGCCCTCAAAATGCGCGGAACTGGTGTATCGATGCCGAACAAACAACTGGCGTGTGAATATGTTGATGAATTAACACCAGCTGCCAAACTGGTGGGGGCCATCAACACCATCGTTAATGATGATGGCTATCTGCGTGGCTATAACACCGACGGCACGGGCCATATTCGCGCCATTAAAGAGAGCGGTTTTGATATCAAA  >  NC_000913/1773882‑1774157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.