New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 458799	3 (0.070)	35 (0.890)	28/276	0.3	92.3%	intergenic (+99/‑89)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609347	NA (NA)					intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

GTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACT  >  NC_000913/609221‑609486                                                                                                                               |                                                                                                                                            gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAAAGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAATTAACGATCATAGGCGTAGTCCCCGcc                                                                                                                             >  1:568678/1‑142 (MQ=11)    gCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGGGGCACCGAGGCGTCGCACTCTTCAGATGGTTCAACCCTTACGTTCGCGCTTATGCGAGTCATCATCTCatat                                                                                                                          >  2:505112/1‑143 (MQ=11)      caatCGTTGGACAGTATCTCTGATAGCCTTCAAAACGTATTTAAAGAACGCGAAGCAACGTCTAAACGAGGCACCGAGGCGGCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATcc                                                                                                                        <  2:235761/140‑1 (MQ=14)          cGTGGGACAGTAGCCCTGGCAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGtt                                                                                                                    <  2:277877/143‑1 (MQ=255)                aCAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTCAGTTACCGCTTATGGGAGTAATCACCACATATCCGGTTttcagg                                                                                                              >  2:476059/1‑143 (MQ=14)                aCAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGTGAGTAATCCCCGCATATCCGGTAgtcaga                                                                                                              >  2:256108/1‑142 (MQ=255)                aCAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAATAATTCCCGCATATCCAGTTgtcagg                                                                                                              >  2:710921/1‑143 (MQ=255)                 cAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTCTGGGCGTAATCCCCGCATATCCGGTTgtcaggt                                                                                                             >  2:663474/1‑143 (MQ=255)                    tATCCCTGACAGCCTACAAAACGCAATTAAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAAGCGTCGCAGTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATACCCGCATATCCGGTTgtcaggtcag                                                                                                          >  1:371134/1‑143 (MQ=255)                          tGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGCGTAATCCCCGCATATCCGGTTGTCAGATCAGGATGGt                                                                                                    >  2:481534/1‑143 (MQ=255)                          gtaCATCCTACATATCGCCATTTAATCCCTCGAGGTATCGTCTTAACGAGGCCCCGAGGCTTCGCATTCTTCAGATGGTTCAACCCGTAAGTTAGCGCTTATGGGAGTAATCCCCGCATTTCCGGTTGTCAGGTCAGGATGGt                                                                                                    <  1:378307/141‑1 (MQ=17)                           gACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCACATACTTAAGATGATTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGCTGTCAGGTTAGGATGGTa                                                                                                   >  2:339069/1‑143 (MQ=17)                            acggCCGACAAAACGCGATTGGAGACCGCTAGGCGTCGTCTTAACGTGGCACCGAGGCGGCGCATTCTGCAGATGGTTCAACCCTTAAGTTAGCGTTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTaa                                                                                                  <  1:671510/140‑1 (MQ=18)                              aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTCTGGGAGTAATCCCCGCATATCCGGTTTTCAGGGCGGGGTGGTCAgg                                                                                                >  2:275391/1‑143 (MQ=17)                                         cGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGATTTa                                                                                     >  2:490575/1‑143 (MQ=255)                                         cGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATCGGAGTCATCCCCGCATCTCCGGTTGTCAGGTCAGGCTCGCAAGGCACCTGcctca                                                                                     >  1:22655/1‑139 (MQ=18)                                                      cgcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGACAGGATGGGAAGGCACCTGCTATACACATTAGCCCgc                                                                        >  1:365982/1‑142 (MQ=21)                                                             cagcGTTTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCGTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGt                                                                 <  1:95584/140‑1 (MQ=255)                                                                    ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTGCCGCACCTGCTTTACACTTTCACACGTGGACAgagagagca                                                          >  2:673919/1‑138 (MQ=21)                                                                        cgtgtcACCTAGGCTTCGCATTCTTCATATGGTTCAACCCTTAAGTTAGCGTTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCgg                                                      <  2:296520/138‑1 (MQ=38)                                                                         gAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCAGGATGTCAGATCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCggg                                                     >  2:259818/1‑143 (MQ=255)                                                                         gAGGCACCGAGGCGTCGCATTATTCAGATGGTTCAAGCCATAAGTTCGCGAGTATGGGAGGAAGCCCGGCCTATCCGGTTGCCAGGTCAGGGTGCGAAGGCAGCGGCTTTACACTTTGGACCGCGGCCatgcaaggaggcggg                                                     >  1:128462/1‑129 (MQ=12)                                                                             cacgtatgCGTCGCGTTCTGCAGATGCTTCAACCCTGAAGTTAGCGCTGATGGGAGGAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGaa                                                 <  1:623991/136‑1 (MQ=255)                                                                              aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTCATCCCCGCATATCCGGTGGTCAGGTCCGGATGGTAAGGCACCTGCTTTACACTTTCGACCGTGGTAAGCGATCGCTGCGGCCGGAt                                                >  1:691031/1‑143 (MQ=25)                                                                               ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACATTCGACAGTGGTCAGTGATGGATGCGGGCGAATc                                               >  2:572195/1‑143 (MQ=255)                                                                                      gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGCCCAGGCTGGTAAGGCACCTGCTTTACACTTTCGCCCGTGCTCCGTTATGGCTGCGCGCGCATTGTACCAg                                        >  1:46882/1‑143 (MQ=37)                                                                                       tCGCACTCATCAAATCGTGCAACCCCTAAGGTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGa                                       <  2:225265/143‑1 (MQ=255)                                                                                         gCATTCTTCAGTTGTTTCATTCTTTAATTTAGTGCTTATGGTAGTAATACCAGCATAGCCGGTTGGCAGGACAGGACGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAtg                                     <  2:16943/143‑1 (MQ=255)                                                                                               ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCATATTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCa                               >  2:492970/1‑143 (MQ=255)                                                                                                   gATGGTTAAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTa                           <  2:412509/143‑1 (MQ=255)                                                                                                    aTGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAGTCGTACCAGATGTTGTCAATTaa                          >  2:116252/1‑143 (MQ=255)                                                                                                    aTGGTTCAACCCTTAAGTGAGCGCTCACGCACATCCTCCCCGGTTATCCGGTTGTCAGGCCAGGATGGTAAGGCACCTGTTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTaa                          <  2:130430/143‑1 (MQ=255)                                                                                                     tGGTTCCACCCGGATGTTAGCGCTGATGGGTGTACTCCCCGCATATCCGGTTGTCAGGTGAGGATGGTAACGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAAt                         <  1:464386/143‑1 (MQ=255)                                                                                                          cAACACTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGACAGGACGGTAAGGCACCTGCTCTACACTTTCCCCCGTGGTCAGTGAAGGCTGGGGGCGAATCGTATCAGATGTTGTCAAGTGGTCgtgg                    >  1:564973/1‑142 (MQ=255)                                                                                                            tcacgtAAGTTAGCGCTTAGCGGAGTCCTCCCCGCATATCCGGTTGTCAGGTCAGGATGGTCAGGCACCTGATGTACACTGTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTg                  <  1:339760/138‑1 (MQ=255)                                                                                                             cccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATACTGTCAATTAATCGTGtttg                 >  2:402779/1‑141 (MQ=255)                                                                                                                ttAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCACGTGGTCAGTGATGGCAGCGAGCGAATCGTACCAGATGTGGTCAATTAATCGTGTTGGcac              >  2:190547/1‑143 (MQ=255)                                                                                                                        gcgcTGAAGGGAGTAAGCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACGGTAGACACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTAt      <  2:331404/143‑1 (MQ=255)                                                                                                                            ttATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGACGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATAGTGTTGGCACAGCGTTATGACt  >  2:194317/1‑143 (MQ=255)                                                                                                                               |                                                                                                                                            GTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACT  >  NC_000913/609221‑609486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.