New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1096961 =	48 (1.190)	3 (0.110) +GGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT	3/190	4.0	10.5%	intergenic (+132/+604)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	1097062 =	29 (0.720)					intergenic (+233/+503)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAT  >  NC_000913/1096929‑1097203                                                                                                                                      |                                                                                                                                              tCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                                                                                                                      >  2:182576/1‑143 (MQ=255)  ccccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTACAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGTCTCGCTTCGCACACCCTGAGGGGAgaaaac                                                                                                                                     >  2:722547/1‑138 (MQ=17)  ccccTCGCCCTAACAGAAGTGGGCGGGGGCACCTGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGc                                                                                                                                     <  1:568121/143‑1 (MQ=255)     cTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTCCAATATACGAATAAAAAGCCCGTACTTTCGTACGAGCTCTTCGTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                                                                                                                                  <  2:21625/143‑1 (MQ=255)            tAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                                                                                                           <  1:647613/143‑1 (MQ=255)             aaCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTc                                                                                                                          >  2:337831/1‑143 (MQ=255)              ggtggggTGGGCGCGGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACGTTCGTACGAGCTCTTCTTTAGATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCa                                                                                                                         <  1:70992/137‑1 (MQ=11)                aGACGTGGGCAGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTCCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGAGCAGCCCGCTCACCGCGTTCCCg                                                                                                                       >  2:126201/1‑143 (MQ=14)                      gggCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCCGCCCGCTCACTGCGTTCAGGGTCtct                                                                                                                 >  1:242887/1‑141 (MQ=255)                       ggCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCCCTGCGTTCACGGTCTGTc                                                                                                                >  2:32546/1‑143 (MQ=38)                          gggggCACCCGGGGTGTGCAATATACGAAAAAAGAGCCCGTACTTTCGTACGAGCTCTTCTTTGAATATGGCGGGGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCaa                                                                                                             <  1:524214/143‑1 (MQ=255)                           ggggCACCCGGTGTGTGCAATCTACGAAAAAAAAGCCCGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                                                                                                            <  1:327546/143‑1 (MQ=21)                             ggCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTACGTACGAGCTCTTCTGTAAATGTGGCGGTGACGGGGGGGTTGACTCGCGTCGCCCGCCCTGCGGGCAGCCAGCACAACGCGTTCACGGCCTGTCCAACTg                                                                                                          >  1:341795/1‑143 (MQ=11)                                                atgcGAAGAGAAAGCCCGTACTTTCGTACGAGCTCTTCTTTACAGATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc                                                                                       <  1:126509/140‑1 (MQ=11)                                                           aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCGGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg                                                                            <  1:193584/143‑1 (MQ=17)                                                              cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCt                                                                         >  2:534773/1‑143 (MQ=32)                                                                  tACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtctc                                                                     <  1:465713/143‑1 (MQ=32)                                                                     tttCGTACGCGCCCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCTTAGCTCGCCGTGCGCGATGGCCGCTCACTGCGTTTCCGGCCTGTCCCTATGGCCGTCGCCAGCTGTCGACCGGCCGTCggcacggcgcgcc                                                                  >  1:180239/1‑132 (MQ=2)                                                                                     cttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa                                                  >  1:434611/1‑143 (MQ=32)                                                                                     cttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa                                                  <  1:182576/143‑1 (MQ=32)                                                                                       ttcaaTGTGGCGGTGAGGGGGGGATTGACGCGCTTGGCTCGCCCTGCGGGCAGGCCGCTCACTGCGTTCACCGGCTGTCGTTCTTGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATa                                                <  1:286003/140‑1 (MQ=11)                                                                                        tAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                                          >  2:692028/1‑132 (MQ=32)                                                                                               ggCGGTGAGGGGGGGATTGACTCTCTTCGCTCGCCCTTCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa                                        <  2:192637/143‑1 (MQ=25)                                                                                                gCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa                                                  >  2:667604/1‑132 (MQ=33)                                                                                                   gTGAGGGGGGGATTGACTCGCTTCGCTCGCGCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGGCCAACGGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaaaa                                    <  2:37708/143‑1 (MQ=255)                                                                                                          gggtATTGACTCGCTTCGTTCGTCCTGCGTGCAGCCCGCTCATTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTa                             <  2:348806/143‑1 (MQ=11)                                                                                                            ggATTGATTCGCTTCGCTCGCCCTGCGGGTAGCTTGCTCACTGCGTTCATGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACt                           <  2:351962/143‑1 (MQ=11)                                                                                                                 gACTCGTTTCTCTCTCCTGGCGGGCAGCCCGCGCACGGCGTTCCCGGTCTGCCCACCGGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGt                      <  2:339837/143‑1 (MQ=11)                                                                                                                                     cGGGCCGCCCGCCCACTGGCTTCACGGTCAGTCGAACTGGCTGTGGCCAGTTGTCGACCCCCGGTCGGGGCTTCTGATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAatat  <  1:722547/143‑1 (MQ=11)                                                                                                                                      |                                                                                                                                              TCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAT  >  NC_000913/1096929‑1097203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.