| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4213167 = | 77 (1.070) | 5 (0.080) | 5/262 | 9.2 | 6.3% | intergenic (+9/‑66) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| ? | NC_000913 | 4213198 = | 78 (1.180) | intergenic (+40/‑35) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4213318‑4213167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggtttttTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTT > NC_000913/4213198‑4213339 GCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACC > 2:201316/1‑143GCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACC > 2:197247/1‑143 CAGCGTCTCCTGACACTTCACGTGTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCG < 1:276651/143‑1 AGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGG > 1:768857/1‑143 CGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGG < 2:996818/143‑1 TCCTGACACCTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGAGTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTT < 1:883635/143‑1 ctgGACACTTCGCGTGTGCGTGCAAGATGGCGAACAGTAATTTGGTGACGACGAATTTGGATATACAGCACTGACATGAGATGCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT < 1:896912/140‑1 TTCACGTTTGCTTTCAAGATCGCGCACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGACATGCACAAAACCCCGGCCACATGAACCGGGGgaattctaacttg > 1:344525/1‑130 CAAAAAACCCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGTTGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGACGTGTCA > 2:650321/1‑143 AAAAAACCCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAG > 2:113220/1‑143 AACCCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAATGCAAAAGTAAAGAGTCAGGAGA > 2:329673/1‑143 CCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGAT > 1:447606/1‑48 CCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGAT < 2:447606/48‑1 GGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGC > 1:426280/1‑143 GGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCG < 2:130555/143‑1 GTTTTTTGCATCTCAATGATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGC < 1:987402/143‑1 GTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGC < 2:763143/143‑1 TTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTG < 2:775999/143‑1 TTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTT > 1:437617/1‑143 GCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4213318‑4213167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggtttttTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTT > NC_000913/4213198‑4213339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |