New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1220759	87 (1.210)	5 (0.070)	5/272	9.5	5.7%	pseudogene (1159/2574 nt)	ycgH	pseudogene, putative ATP‑binding component of a transport system
	?	NC_000913	= 1220768	83 (1.210)					pseudogene (1168/2574 nt)	ycgH	pseudogene, putative ATP‑binding component of a transport system
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1220612‑1220759 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT  <  NC_000913/1220768‑1220629                                                                                                                                                                                                                                                                                                  tacGTTAACAAAACTACAACGAATGTAACTAAACTCAATCTAAGTATTATCACACCTGGTAATAATGTTCTCGCTAATAGTACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGTAGCGACTAAACTCGT                                                                                                                                                   <  2:30929/140‑1              CTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTG                                                                                                                                      <  2:1023101/143‑1                     ggcTGTAAGTAGTCTTCATCGCAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTGCCGCTGA                                                                                                                               <  2:690524/140‑1                                                                                              TTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTGCCGCTGACGA                                                                                                                            <  1:64503/73‑1                                                                                              TTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGTGGTTGTGCCGCTGACGA                                                                                                                            >  2:64503/1‑73                                                                                                                                           agCGTCAGGGTGGTTGTGCCGCTGACGAGTTTAGTGGCTCGATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTAC         <  1:1102231/141‑1                                                                                                                                                  GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTATATCCGTT  <  2:1055539/143‑1                                                                                                                                                  GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT  <  2:1135469/143‑1                                                                                                                                                  GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT  <  2:770117/143‑1                                                                                                                                                  GCGTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT  <  2:770250/143‑1                                                                                                                                                                                                                                                                                                  GATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1220612‑1220759 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgTGGTTGTGCCGCTGACGAGTTTAGTCGCTCCATTTAGAATAGAGTCGGACGAAATTATGTTTAAGTCACCTCCAGTATTATTAACCAGAACATTATTACCAGGTGTGATAATACTTCGATTAAGGATACTTACATCCGTT  <  NC_000913/1220768‑1220629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.