New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4040682 | 60 (0.840) | 16 (0.230) | 5/280 | 9.8 | 19.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
? | NC_000913 | = 4213161 | 77 (1.090) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTG > NC_000913/4040542‑4040795 | ccACCTGACCCCATGCCGAACTCAGACGTGAAACGCCGTAGCGCCGATGGTAGCGTGGGGTATCCTCATGCGATGGTAGGGAACTGCCAGGCATCAAATAAACCGAAAGGCTCAGACGGCAGACTGAGCCTTTCGTTGTAGCt > 1:182906/1‑143 (MQ=11) tGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACGGCCAGGCATCAAATAATACGAAAGGCTCAGTCGGAAGACTTGGCCTTTCGTTTTATCtgttgt < 2:558430/143‑1 (MQ=255) tGACCCCATGCCGAACTCAGAAGCGAAACGCCGCAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttgt < 2:42165/143‑1 (MQ=25) ccGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGATCAGTCGGAAGACTGGGCCTTTCGCTTTATCTGTTGTTTGTCGGTGa > 1:550714/1‑143 (MQ=21) tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGc‑tc > 2:641651/1‑143 (MQ=35) tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGc‑tc > 1:117405/1‑143 (MQ=35) tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGc‑tc > 2:927161/1‑143 (MQ=35) aGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGTACGC‑tctc > 2:27892/1‑143 (MQ=21) aGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAGCGC‑tctc > 2:236663/1‑143 (MQ=25) aGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTGTTATCTGTTGTTTGTCGGTGAACGC‑tctc > 2:661925/1‑143 (MQ=25) aGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTAGTTTTATAAGTTGTTTGTCGGTGAACGC‑tctc > 2:379377/1‑143 (MQ=255) atgTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGTATCTAATAAAACGAAAGGTTCTGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCt < 1:1089898/141‑1 (MQ=255) aaGTGAATCGCCGTTGCTCAGATGGTGGTGTGGCGTCTCCTGATGCGAGAGTAGGGAACTGCCAGGCATCAGATATAATGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCt < 1:897330/143‑1 (MQ=11) aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCt > 2:602676/1‑143 (MQ=35) tgggaCGCCGGAGCGGCGAGGGTAGTGTAGGGTCTCCTCGGGCGGGAGTAGGGACCTGCGAGGCATCAACTGAAACGAGAGGCTCAGTCGGAAGACTGGGCCTTTCGTGTTATCTGTGGTTTGTCGGTGAACGC‑TCTCCTGAg < 1:210419/139‑1 (MQ=11) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTgtg > 1:99420/1‑141 (MQ=25) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAg > 1:174598/1‑143 (MQ=35) gcacccccGCAGCGCCGTTCGCAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAACACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGt < 1:317256/137‑1 (MQ=11) ataaCGCCTTAGGTTCGATGTTAGTGTATGGGCTCATCAAGTGAGAGTAGGGAACTGCCAGGCATCAAATAAACGGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGt < 2:281272/141‑1 (MQ=11) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAGCGC‑TCTCCTGAgca > 2:201026/1‑141 (MQ=25) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAAATAAAAGGCGGCGATATATACGAAAGGCTCAGTCGGAAGACTCGGCCTTTAGATTTATCCGTTCTCTGTCGACGAACGC‑TACCCTGAgca > 1:500640/1‑141 (MQ=2) aCGCCGTAGCGCCGGTGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAACGGCTCAGTCGGAAGACTGGGCCTTTCGTGTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAgg < 2:1059759/143‑1 (MQ=255) aCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAgg > 1:660045/1‑143 (MQ=34) gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAGAACGAAAGGCTCAGTGGGAAGACTGGGCCTTTCGTTTTGTCGGTTGTTTGTCGGTG‑ACGCGTCTCCTGGGGAGGAc > 2:620827/1‑143 (MQ=11) tAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAAt < 2:396613/143‑1 (MQ=35) tAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAAt > 2:374691/1‑143 (MQ=35) cGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATccgccg < 2:254834/143‑1 (MQ=35) cGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTAGGTGAACGC‑TCTCCTGAGTCGGACAAATccgacg > 2:597947/1‑143 (MQ=255) cGATGGTAGTGTGGGGTCTCCTCATGCGAGAGAAGGGAACTGCCAGGCGTCAAATAAAACGAAGGGCTCAGTCGGAAGACTGGGCCTATCGTTTTATCTGTTGTTTGTCGCTGAATGA‑CCTCCGTAGTATGTCAAATgcgccg > 1:178596/1‑143 (MQ=11) ttgTAGTGTGGGCCCTCCTGATGCGAGAGTAGGGAACCGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGa < 1:230437/141‑1 (MQ=255) tgGTGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAttt < 2:56256/143‑1 (MQ=25) gggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACACATCCGCCGGGCGCGGATTTGa > 1:177744/1‑143 (MQ=25) gggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGa > 2:778200/1‑143 (MQ=35) ggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTGTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGGCAAATCCGCCGGGAGCGGATTGGaa > 2:830546/1‑143 (MQ=255) ttctcccgaggCGAGAGTAGCGAACTGCCATGCATCCACTAAAGCGAAAGGCTCAGTCGGAAGACTGGATTCTTCGTTTTTGCTGTTGTTTGTCGGTGAACGC‑ACTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAAc < 1:264853/133‑1 (MQ=1) gTCTCTTCATGCGATAGTAGGTAACTGCCAGGGATCAAATAAAACGAGAGGCTCAGTCGGAAGACTGTGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAAc < 1:482894/143‑1 (MQ=11) ctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGc > 1:326630/1‑143 (MQ=33) aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTTTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGaa < 2:174598/143‑1 (MQ=17) aTGCGAAAGTAGGGAACGGCCAGGCATAAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGATTTATATGTTGTTTGTCGGTGAACGC‑TCTCCTCAGTAGGCCAAATCCGCCGGGAGCGTATTTGAACGTTGCGaa < 2:984880/143‑1 (MQ=11) tggggAACCGCCGGGAGTCAAATAGAATGAGGGGCTCAGGCTGAAGACTGGGCCTTTCGTTTTATCTGCTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGcc < 1:594936/141‑1 (MQ=11) tAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGcc > 1:206489/1‑143 (MQ=32) gggAACGGCCAGGCAGCAACTAAAACGGGAGGCTCAGTGGGAAGCCTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATACGCCAGTAGCGTATTTGAACGTTGCGAAGCAACGGCCCg < 1:689776/143‑1 (MQ=11) ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCgg > 2:407320/1‑143 (MQ=32) ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGCAGCGCATTTGAACGTTGAGAAGCAACAGCCCgg > 1:411790/1‑143 (MQ=255) gAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCCCCTGGAGAGGCCAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCCGa > 1:167287/1‑143 (MQ=11) aCTGCCAGGCATCAAATAAAACGAAAGGCTCGGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCAGGacg > 1:1200215/1‑141 (MQ=12) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAgggg > 1:903235/1‑142 (MQ=17) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATCTGACCGTTGCGAAGCAACGGCACGGCgggc > 1:556926/1‑142 (MQ=255) gCCAGGCATCACATAAGACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑GCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGTCCGGAGGGTg < 1:676977/143‑1 (MQ=255) cAGGCATGAAATAATACGAAAGTGTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGc < 1:93820/143‑1 (MQ=255) gtcATCAAGTAATACTAAAGGCTCAGTCGGGAGACTGGGCCGTTCGTTTTAGCTGTGGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATTCGCCGGGAGCGGATTTTAACGTTGCGAAGCAACGGCCCGGAGGGTGGCgg < 2:356610/141‑1 (MQ=11) gtcATCAAATAAAACGAAATGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCgg < 2:356829/141‑1 (MQ=17) cATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGCGCGGAGTTGAACGTTGCGAAGCCACGGCCCGGAGGGTGGCgggg > 2:997278/1‑142 (MQ=12) tCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGCGGCGGGCAg > 2:538838/1‑143 (MQ=17) gtAAAGCGAAAGGCTCAGTCGGGAGACTGGGCCTTTCGTTGTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcg < 2:507534/142‑1 (MQ=12) aaaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgccc > 1:962905/1‑143 (MQ=32) aaaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgccc > 1:133935/1‑143 (MQ=32) ggCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGCGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGGCagaca > 1:1125294/1‑139 (MQ=255) gCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAAc > 2:694466/1‑143 (MQ=32) tCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGGAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCGGGACACCCGCCATaacccg > 1:728234/1‑139 (MQ=255) | CCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC‑TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTG > NC_000913/4040542‑4040795 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |