New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979489	0 (0.000)	65 (0.850)	41/438	NT	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290111	NA (NA)					intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

TCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1979266‑1979489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCT  <  NC_000913/2290111‑2289874                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  cttaaCATAAATGTATAAGTCATACTTTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGACACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAGTAAATCACCGTAAATAATCATCTGCTATAAAAAATCACTTTAATGCATTACCAGATAAGCTCTTTTTAAACCAAACATTAACCAC‑CAAAAAACTAAGGAAaggatgacaaa                                                                                                                                                                                                                                  >  1:573112/6‑228    aaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGT                                                                                                                                                                                                                                >  2:711250/3‑238     aCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCC                                                                                                                                                                                                                              <  2:656391/238‑1                TAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATAGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATAATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAAACACTTACCGACCAACAAACTAAGGAAGGTGCGAAAAAATCCCTaaaataaaa                                                                                                                                                                                                                   >  1:779485/1‑230                       TACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCAAAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAAGTT                                                                                                                                                                                                            >  2:360295/1‑239                        ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCCATTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGAAAGGTGCAAACAAATCCCTAAAAAGAAATAATGTTT                                                                                                                                                                                                           >  1:282460/1‑239                                 TTGGGTTGATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACCGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGG                                                                                                                                                                                                  <  1:171548/239‑1                                 TTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGG                                                                                                                                                                                                  <  1:711250/239‑1                                            TCAAACTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC                                                                                                                                                                                       <  2:678415/239‑1                                              AATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACACGTCCCTGATATGAGATCATGTTTGTCATCTGAAGCCATAGAACAG                                                                                                                                                                                     >  2:698074/1‑239                                                    TTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGCTAAGCTATTTTTAAA‑CAGACACTTACCGCACAACACACTAAGGAAGGTGCGCACAAGTCCCTGATATGAGATCATGTTTGTCATCCGGAGCCATAGAACAGGGCTC                                                                                                                                                                                >  2:178382/1‑238                                                    TTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACCACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA                                                                                                                                                                               >  2:784351/1‑239                                                              TTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAG                                                                                                                                                                                                                                 >  2:618503/1‑179                                                              TTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAG                                                                                                                                                                                                                                 <  1:618503/179‑1                                                                                                         ATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAGTCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAAAAGGGGTCATCATGAGTCATCAAATTAACTTCGCCGAACAG‑GAATTTAGAAGTAAagcccgc                                                                                                                         >  1:72263/1‑232                                                                                                                  TGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAC‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCC                                                                                                                                                                                                                              >  1:536513/1‑130                                                                                                                  TGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGGGAATTCACCAGAAAGCCCCGTAAAACCAGA                                                                                                                >  1:359005/1‑239                                                                                                                  TGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCC                                                                                                                                                                                                                              <  2:536513/130‑1                                                                                                                           TCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGAAAGCGCCGACAGACCAGAAAGGAGAat                                                                                                       >  2:319469/1‑237                                                                                                                           TCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATT                                                                                                                                         >  1:89201/1‑205                                                                                                                           TCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATT                                                                                                                                         <  2:89201/205‑1                                                                                                                                   ACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑CCAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGCAAAGAGATTTTCTTGT                                                                                                >  2:2668/1‑238                                                                                                                                   ACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC                                                                                               <  2:214209/239‑1                                                                                                                                   ACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTAAGCAGTAAACGCCGTCAAACCAGAAAAAAGATTTTTTTtt                                                                                                >  1:805834/1‑236                                                                                                                                     TCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAACCGCCGTCAGACCAGAAAAGCGATTTTCTTGTCC                                                                                              >  2:500858/1‑238                                                                                                                                     TCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATAAACTTACCTTCGCCG‑ACAGGGAATTCACCAGAAAGCGCCGCCAGACCAGAAAAGAGATTTTCTTGTCC                                                                                              >  1:89955/1‑238                                                                                                                                             AATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC                                                                                                    <  2:229415/224‑1                                                                                                                                                  TCATCTGCTAAAAATAATCCCTTTCATGCAATACCAGGTAAGCTATTTTTAAA‑CCGACACTTCCCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGAT                                                                                <  1:784351/239‑1                                                                                                                                                    ATCCGCTAAAAATAATCCCTTTCATGCAATCCCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGAT                                                                                <  1:500858/237‑1                                                                                                                                                     TCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTTTTGTCCCGCATGGAGaaaaatcc                                                                             >  1:106702/1‑231                                                                                                                                                       TGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGCATTCAGCAGTAAGCGCCGTCAGCCCCGAAAAGAGATTTTCTTGTCCCGCCTGGGGCAGATcttg                                                                            >  1:125915/1‑234                                                                                                                                                       TGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCTCAAAACCAGAAAAGAGATTTTCTTGTCCCGCAcctgtcccttataac                                                                           >  1:229415/1‑224                                                                                                                                                       TGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTG                                                                            >  2:505252/1‑238                                                                                                                                                         CTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑CCAGTGAATGCAGCAGTAAGCGCCGTCAGACAAGAAAAGAGATTTTTTTGTCCCGCTTGGAGAGAATTCTGCCc                                                                         >  1:500027/1‑238                                                                                                                                                         CTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCaa                                                                         >  2:337144/1‑237                                                                                                                                                            TAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGAAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑CCAGTGAATTCAGCAGTAAGCGCCGTCAGACCGGAACAGAGATTTTCTTGTCCCGCATGGAGCAGATCCTGCCATGc                                                                      >  2:100723/1‑238                                                                                                                                                            TAAATAATCACTTTCATGCAATACACGATAAGCTATTTTTAAA‑CAGCCACTTGCCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGATATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGG                                                                      <  1:178382/239‑1                                                                                                                                                              aatgtgtttaagagaaagaaACCAGATAAGCTATTTTTAAA‑CAGACATCTACCGCACAACAAACGAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCA                                                                    <  1:488576/219‑1                                                                                                                                                                   TCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTTTCCCGCATGGGGCAGATTCTGCACTGGCAAAAaa                                                               >  1:465314/1‑237                                                                                                                                                                   TCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACA                                                               >  2:171517/1‑239                                                                                                                                                                   TCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGA                                                                                                         >  1:726244/1‑197                                                                                                                                                                   TCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGA                                                                                                         <  2:726244/197‑1                                                                                                                                                                   TCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCATCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACA                                                               >  2:47026/1‑239                                                                                                                                                                   TCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGAGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTGGCCG‑ACAGTGAATTCAGCATTAAGCGCCGTCAGACCTGAAAAGAGATTTTCTTGTCCGCCATGGACAGGATTCTGCCATGGCAGAACA                                                               >  2:891821/1‑239                                                                                                                                                                        TTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTG                                                          >  2:84985/1‑239                                                                                                                                                                        TTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATT                                                                                                                                         <  2:296520/160‑1                                                                                                                                                                        TTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATT                                                                                                                                         >  1:296520/1‑160                                                                                                                                                                            TGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCCCAACAAACTAAGGAAGGTGCGAACAAGTCCCTGCTATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGCCAAAACATGGTGGAAG                                                      >  2:801042/1‑239                                                                                                                                                                                 TACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGACGTAATC                                                 >  2:122294/1‑239                                                                                                                                                                                 TACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCA                                                                                                                                       <  2:659981/153‑1                                                                                                                                                                                 TACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCA                                                                                                                                       >  1:659981/1‑153                                                                                                                                                                                      GATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG                                                                                                                                                                                   <  1:582508/105‑1                                                                                                                                                                                      GATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG                                                                                                                                                                                   >  2:582508/1‑105                                                                                                                                                                                          atCTATTTTAAAA‑CAGCCACTTACCGAACAAAAAACTAAGGAAAGTGGGAACAAGTCCCGGATATGAGATCATGTTTGTCATTTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTT                                        <  1:336389/237‑1                                                                                                                                                                                           GCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCAGGGCCAAACATGGTG                                                          >  2:488576/1‑220                                                                                                                                                                                                TTTTAAA‑CAGACCCTTCCCGCAAAACAAACTAAGGAAGGTTCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAAAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCC                                  <  2:465314/239‑1                                                                                                                                                                                                TTTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGGTTCTGCCATGGCAAAAAATGGAGGAAGaaaccaaggagggttacccc                                  >  1:114793/1‑219                                                                                                                                                                                                TTTAAAA‑CAGAAGCTTACCGCAAAACAAACTAAGGAAGGGTCGAACAAGTCCCTGATATAGAATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCC                                  <  2:125915/239‑1                                                                                                                                                                                                 TTTAAA‑CAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGCAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGGGCCGTTTTACCCCA                                 >  2:317424/1‑239                                                                                                                                                                                                      A‑CAGACACTTACAGCCCAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGCCCAGAAAAGCGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCTAGCCGTTTTACCCCAAG                               >  2:418163/1‑236                                                                                                                                                                                                          GACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATCCTGCCATGGCAAAACATGGTGGAAATAATCGAGCCGTTTTACCCCAAGGCGGGa                         >  1:300999/1‑238                                                                                                                                                                                                          GACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCAATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGGTTCTGCCATGGCAAACAATGGCGGAAGTCATCGAGACGTTTTACCCCAATGCGGGT                         >  2:298474/1‑239                                                                                                                                                                                                                 ACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCg                  >  2:730497/1‑238                                                                                                                                                                                                                  CCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCG                 <  2:106702/239‑1                                                                                                                                                                                                                   aattgatttctattAGGAGGGTTCGAACAAGTCCCTGATTTGAGTTCTTTTTTTGCATCTGGGGCCATAGAACAGGGTTCATCATGGGTCATCAACTTACCTTCGCCG‑ATAGTGAATTCAGCAGTAAGCGCCGTCAGACCGGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGG                <  1:203765/225‑1                                                                                                                                                                                                                     CACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGC               >  2:677751/1‑238                                                                                                                                                                                                                       CAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGA             >  2:141619/1‑238                                                                                                                                                                                                                               TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCC     >  2:295835/1‑238                                                                                                                                                                                                                               TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCC     >  2:861581/1‑238                                                                                                                                                                                                                                AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGACAAGAGATTTTCTTGTCCCGCATGGAGAAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAACCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGC   >  2:759344/1‑239                                                                                                                                                                                                                                AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGACGTCATCGAGCCGTTTTACCCCACGGCTGGTAATGGCCGGCGACCTTATCCcc   >  2:25047/1‑237                                                                                                                                                                                                                                 AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCCGACCAGAAAAGAGATTTTCTTGTCCCGCAGGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGTGGGTAAAGGCCGGGACCCTTATCC     >  1:218816/1‑236                                                                                                                                                                                                                                 AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCT  <  2:257129/239‑1                                                                                                                                                                                                                                 AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCC     >  2:710646/1‑236                                                                                                                                                                                                                                 AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGGCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCT  <  2:148177/239‑1                                                                                                                                                                                                                                 AGGAAGGTGCAAACAAGTCCCTGATATGAGATCATGTTTGTCATCGGGAGCAATAGAAAAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCT  <  2:784331/239‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAA‑CAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1979266‑1979489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCG‑ACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCT  <  NC_000913/2290111‑2289874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.