| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,124,034 | T→C | 12.1% | E141G (GAG→GGG) | cytR ← | Anti‑activator for CytR‑CRP nucleoside utilization regulon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,124,034 | 0 | T | C | 12.1% | 182.6 / 2.6 | 80 | E141G (GAG→GGG) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon |
| Reads supporting (aligned to +/- strand): ref base T (39/26); new base C (4/6); total (43/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTT > NC_000913/4123812‑4124269 | aTGCCGCAGCGCCGCAGCGCCGGAACAGAGCCTTGCAGGCGGTAGGGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCaaa < 1:553739/239‑1 (MQ=255) cGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCACCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACgg < 2:646750/238‑1 (MQ=255) gCAGGGGCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑Gaa < 2:818970/239‑1 (MQ=255) gAACATAGCCTTGCAGGCCGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGcaac < 2:525887/239‑1 (MQ=255) ccTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGc < 2:50017/238‑1 (MQ=255) gtattggctacgCGGCATCTTTTTGGGACCGGCTTTTCCGCCAATTCGTTTATGCCCTTGCTCATATAAATAATTTACTGGCTCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCt < 1:330375/228‑1 (MQ=255) ttgTGCCACAGCGGCTTCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCAACAAAGGCGGCGGTCAGATTGGCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCt < 1:872892/236‑1 (MQ=255) tAGGGACACAGCGGCATCCCCTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCt < 2:522654/238‑1 (MQ=255) gCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATTAACTGTAGGCAACTCCAGCTCCGGGGCAAATTCGTTCCCCATCACCATCGGCGGCGGATTAACCTGTTCCTCAATGCTGGC‑ACCAAACGCCAGCCTT‑GAACCCACAAACAAAAATCCACCAAATTCCTT‑GGGGATGTTc > 2:838282/1‑239 (MQ=255) tctcTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGGGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACCCGGTTCCCCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCCAAAACATGCCCTCAATTTGCTT‑GGGGTAGTTCAAATC‑g > 2:656359/1‑239 (MQ=255) ctTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATa < 2:201099/239‑1 (MQ=255) cGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATTAACTGTAGGCAGCTCCCACTCCGCTGGAAAATCGTTCGCCCTCCCCATAGGCGGACGGTAACGCTGGTCGCCAATGTTGGCAATCAAACGGC‑GGCTT‑GGACCCCACGACAAAACGCCACAAATTTACCT‑GTTGTTGAACCAAtatgaaaagactttt > 1:488762/1‑225 (MQ=255) cGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑TAACCCAGCAACAACATTCCATCAATTTTCTT‑GGTGGTGATCAAATC‑GATAAAGGgtttt > 2:588660/1‑239 (MQ=255) gCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACAAGCCCTCAATTTTCTT‑GGGGGTGATCAAATC‑GATAAAAGtttttt > 2:495550/1‑238 (MQ=255) gCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGGGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACCCTGTTCCTCAATGCTGGC‑ATCAAACCGCCGCCTT‑GAAACCAGCAACCACAATCCATCAAATTTCTT‑TGTGGTGATCAAAACGGAAAAAAGtttttt > 1:604648/1‑239 (MQ=255) gCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGAAATGAACAGTAAGCAACTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGGATACCCTGTTCCTCAATGCTGGC‑CTCAAACGGCAACCTTGGAACCCACCACAAAAATCCCAT‑AATTTGCTT‑GGggatggaaaaaaagaaaaaaggttttt > 1:315095/1‑216 (MQ=255) aTGCCCTTGCTCATATAAAGAATTTACTGCATCAAATGCGGCGGGCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTTCGGTGCAAATTCGTTCGCCATCCCCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑TATAAAGGTTTTTTCCTGCTGATTTTGATGCGcac < 2:568175/239‑1 (MQ=255) tGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGGGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGACTAAACC‑GTTAAAGGGTTTTTCCTGCGGATTTT‑ATgcggcaca > 2:313930/1‑234 (MQ=255) ctttctatttttaattatTTCCCGCAACAAGTGCGGTGGTCAGTTTGTCGATATGAACTTTAGGCAGCTCCAGCTGCTGTGCAAATTCGGTCGCCGTCGCCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCg < 1:733256/227‑1 (MQ=255) tGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCCGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCTTCAATTCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGGGATGATTCAAAC‑GATAAAGGGTTTTTCCTTCTGATTTTTGTTAGCACAGTCGcc > 2:460601/1‑239 (MQ=255) tGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGGTCCCCCATGCTTGC‑ATCAAACCGCACCCCT‑TGACCCCCCACACACATTCCACCAAATTTCTT‑GGGGTGGATCAAAAC‑CAAAAAGGATTTTTCCTTCTGATTTTTATGGGcacaagccca > 1:732073/1‑233 (MQ=255) cATATAAATAATTTCCTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAAt < 2:796991/238‑1 (MQ=255) cATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATc < 2:419915/239‑1 (MQ=255) cATATAAATAATGTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAAt < 2:286225/238‑1 (MQ=255) tataAATAATTTACTGCATCAAATGCGGCGGTTAGATTGTCGATCTGAACTGTAGGCAACTTCAGCTCCGGTGCAAAATCGTTCGCCATCACCATCGGCGGCAGAGTACGCTGTTACTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGGGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAg < 2:867919/239‑1 (MQ=255) ataaataaTTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTTCGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAAACCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGGTTTTTCCTGCTGATTTTGATGGGGCCCGTCGCCAATCAGc > 2:104299/1‑239 (MQ=255) ataaataaTTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCCAATC‑GATAAAGGGTTTTTCCTGCCTATTTTTATTCGCACAGTCGCCAATCAg > 2:132582/1‑238 (MQ=255) ataatTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCCTCAATTTTCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATTCGCCAAGTCGCCAAACAGCAccc > 2:319664/1‑238 (MQ=255) aatTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GTTAAAGGTTTTTTCCTGCTGATTTTTTTGTGCACAACTGCCAAACAccaccaaa > 2:36620/1‑237 (MQ=255) tttACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑TAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGGTTTTTCCTGCTGATTTTGATTCGCACAGTCGCCAATCAGCACCaaaaa > 2:673109/1‑235 (MQ=255) tttACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCCCAAGCGCCAATCAGCACCA‑Cat > 2:313064/1‑238 (MQ=255) tttACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGGGATGATCAAATC‑GATAAAGGGTTTTTCCTGCTGATTTTTATGCGCACAGTCGCCAATCAGCAcccggta > 2:480559/1‑234 (MQ=255) tttACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAAATGTAGGCAGCTCCCACTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTAAGCCGTTCCCCCATTCTGGC‑ACTCAACGGCAGCCTT‑GGAACCAGCAACAACATACCCTCAATTTTCTTGGGGGATG‑TCAAAAC‑GTGAAAGGGTTTTTCCGGCGGTTTTTGGTTCGCACAAGCCCCAAAAAGAACCA‑Gaca > 1:776937/1‑237 (MQ=255) gCATCAAATGCGGCGGTCAGGTTGGCGATATGAAATGTAGGCAGCTCCAGCGCCGGTGCAAATTCGTTCGCCCTCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAAACCAGCCACAACATGCCATCAATTTTCTT‑GGTGAGTATCAAATA‑GATAAAGGTTTTTTCCTGCTGATTTTGTTGCGCACAGCCGCCAATCAGCACCC‑Gaattc > 2:579948/1‑231 (MQ=255) cATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTTCTT‑GGTGATGATCCAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGTTGCGCCCAATCGCCAATAAGCACCA‑GAAATCCCTGa > 2:36752/1‑239 (MQ=255) cATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGGTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GAAATCCGTGa > 2:816046/1‑239 (MQ=255) cATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCCGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCCGCAACAACATGCCATCAATTTGCTT‑GGGGATGATCAAATC‑GATAAAGGGTTTTTCCTGCTGATTTTTGTGCGCACAAGCGCCAAACAACACCA‑GAAAACCCTGa > 1:437116/1‑239 (MQ=255) cAAATGCGGCGGTCAGATTGTCGATATGAAATGTAAGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATACCCATCGCCGGCAGAATACCCTGTTCCTCCATGCTGGC‑CTCCAACGGCAGCCTT‑TAACCCCACAACAACATGCCACCAATTTTCTT‑GGGGCTCGTCAAATC‑GATAAACGGTTTTTCCTCCTGATTTTGTTGCGCACAATAGCCAAACaaaacccaaaaacccggattt > 1:857750/1‑219 (MQ=255) ggcggTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCt < 1:64030/92‑1 (MQ=255) ggcggTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCt > 2:64030/1‑92 (MQ=255) gcggTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTAAGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GGTAAAGGGTTTTTCCTTCTTATTTTTATGCGCACAGTCGCCAATAAGCCCCAGGATA‑CCGTGATTTTCCGCCGt > 2:71902/1‑239 (MQ=255) cggTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGt < 2:732073/238‑1 (MQ=255) tggcGATATGAACTGTAGGCAGCCCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATa < 2:315095/236‑1 (MQ=255) ataaGAACTGGAGGCCACTCCAGCTCCGGGTCAAATTCGTTCCCCATCACCATCGGCGGCAGATTCCGCTGTTCCTAAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAAGC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATAcc < 2:91487/236‑1 (MQ=255) ttggaattttgggCCGCCCCAGCCCCGGTGAAAATTCGTTCGCCATCACCATCGGCGGAAGATTACGCTTTTCCTCAATGGCGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGa < 1:816046/228‑1 (MQ=255) tGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCAATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGAACAGTTGCCAATCAACACCA‑GATATACGTGATTTGCAGCCGTAACTTCGATACCGCGaaa > 2:351885/1‑238 (MQ=255) cTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCCCAGTCGCCAATCAGCACCA‑GATATCCGTGATTTTCCCCCGTAACTTCGATACCGCGAAAAAtt > 1:840644/1‑239 (MQ=255) gTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCCCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCCTAACTTCGATACCGCGAATAAttt > 2:742537/1‑238 (MQ=255) tAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATCAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAAACAGCCCCA‑GATATCCGGGATTTGCCCCCGGAACTTCGAACCCGCGCATAAtt > 1:91487/1‑236 (MQ=255) gaGGCAGCCCCAGCTCCGGTACAAATTCCTTCCCCAACACCATCGGCGGTAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGGGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCg < 2:809763/238‑1 (MQ=255) gcccgctccgtccccGGTGCAAATTTGTTCGCCATCCCCATCGGCGTCAGATTGAGCTGTTCCACAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCg < 1:167366/224‑1 (MQ=255) agctccagctccGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGACTAATTTCGCTaaa > 2:792834/1‑239 (MQ=255) ctccagctccGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAaaga > 2:180708/1‑239 (MQ=255) ctccagctccGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGATTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGGGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAaaga > 2:469142/1‑239 (MQ=255) tccagctccGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCCAAGTCGCCAATCAGCACCC‑GATATCCCTGATTTGCCGCCGTAACTTCGATACCCCGAAAAAATTCCCTaaaaaa > 1:267524/1‑239 (MQ=255) cagctccGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAATAAgg > 2:27148/1‑239 (MQ=255) cagctccGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGAACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAgg > 2:663704/1‑239 (MQ=255) ctccGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTTCCGCCGTAACTTCGATACCCCGAAAAATTTCGCCAAAGAAGGGaa > 1:239557/1‑238 (MQ=255) ctccGGTGCAAATCCGTTCGCCATCACCACCGCGGGCAGATTGCTCTGTTCCGCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTG‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGAAGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGAt < 2:126516/239‑1 (MQ=255) ccccGGTGAAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGAt < 2:242513/237‑1 (MQ=255) tccGGTGCAAATTCGTTCGCCACCCCCATCGGCGGAAGATTACGCTTTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGAt < 2:367325/238‑1 (MQ=255) cccGGTTAAAATTCGTTCCCCATCCCCAAGGGTGGAAGGTTACCCTGTTCCCAAATGCTGGA‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCAACAATTTGTTT‑GGTGATGACCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGAt < 2:776937/237‑1 (MQ=255) ggTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACCTGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGACGCCGAAACTTCGCAACCGCGACTAATTTCGCTAAAGAAGGGATCGCa > 2:598537/1‑239 (MQ=255) ggTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGCTTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCa > 2:588318/1‑239 (MQ=255) gtgcatatttttctcctaTCCCCCTCGGCGGCAGTTTTCCCTTTTCCACAATGTTGGC‑AGAAAGCGGCAGCCTT‑GACCCCAGCAACAACATGCCAACAATTTGCTT‑GGTGATGGTCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAg < 1:313930/222‑1 (MQ=255) gTGCAAATTCGTTCGCCATCACCATCGGCGGCAGCTTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGGGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATAGCAg > 2:613571/1‑239 (MQ=255) gTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAgggctttc > 2:167366/1‑232 (MQ=255) taaaaactcttccccccaccccACCGGCGGCAAATTCCGCTGTCCCTAAAGTCGGGC‑ATCAACCGGCACCCTT‑GAACCCAGCAACAACAGGCCATCAATTTGTTG‑GGTGATTATCAAACC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAg < 1:132582/218‑1 (MQ=255) ttcgCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATTAAATC‑GATAAAGGTTTTTTCCTGCTGCTTTTGATGGGCACAGTCGCCAACCAGCACCA‑GATATCCGTGATTTTCCGCCTGAAATACGATACCGCGAATAAATCTGCTAAAGAAGGGCCGGCAGAAATCCGGGAc > 1:764157/1‑239 (MQ=255) tcgCCATCCCCATCGGGGGCAGATTCCGTGGTTCCCCAATGCTGGC‑ATGAACCGGCAGCCTT‑GAACCCAGCAAAAGCATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACa < 2:893594/239‑1 (MQ=255) ccccactccccccggggggcAGATTCCCCGTTTCCCCAATGCTGGG‑AACAAACGGCAGCCTT‑GAACCAACCAACAACACGCCAACAATTTGCTT‑GGGGATAATAAAATA‑GATAAAGGTTTTTTCCGGCTGATTTTGATGCGCACAGTCCCCAATCAGCACCA‑TATACCCGTGATTGGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACa < 1:838282/222‑1 (MQ=255) cccATCCCCATCGGGGGAAGATTCCGGTGTTCCTCAATGCTGGC‑AACAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTGGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAAt < 2:485839/238‑1 (MQ=255) cATCGGCGGCAGATTACGGTGTTCCAAAATGCTGGC‑ATCAAACGGAAGCCTT‑GAACCCAGCAACAACAGGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGaa < 2:857750/239‑1 (MQ=255) ggcggcAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACACCATGCCATCAATTTGCTT‑GGTGTTGATCAAATC‑GATAAAGGCTTTTTCCTGCTGTTTTTGATGCGACCAGTCGCCACTCAGAGCCC‑AATATCCGTGATTTTCCGCCGTAACTTCCATAACGCGAATAATTTTCCTAAAGAAGGGATGGCAGATATCCGGGACAATACCCAAAATggg > 1:444662/1‑238 (MQ=255) cggcaatttccctttttCCTCAATGCTGGC‑ATAAAACGGCAGCATA‑GAACCCAGCAAACACATGCCATCAATTTGCTT‑GGTGATGATAAAATC‑GATAAAGTTTTTTTCCTGCTGAGTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGc < 1:852744/224‑1 (MQ=255) cggcAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAGTTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATa > 1:325079/1‑178 (MQ=255) cggcAGATTACGCTGTTCCCAAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATa < 2:325079/178‑1 (MQ=255) cggcAAATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGAAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTg < 2:658815/238‑1 (MQ=255) aGATTACGCTTTTCCCCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCggg < 2:241709/238‑1 (MQ=255) accgtGTTCCACAATGCTGGC‑ATCCAACGGCAGCTTT‑GAACCCAGCAAACACATGCCATCAATTTGCTT‑GGTGATTATCAAATC‑GATAAAGGTTTTTTCCGTCGGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATCTCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCAt < 2:488762/235‑1 (MQ=255) aCGCTTTTCCCCAATGGTGGC‑ATCAACCGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCAt < 2:437116/239‑1 (MQ=255) tCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCtt > 1:859602/1‑239 (MQ=255) | ATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGC‑ATCAAACGGCAGCCTT‑GAACCCAGCAACAACATGCCATCAATTTGCTT‑GGTGATGATCAAATC‑GATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCA‑GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTT > NC_000913/4123812‑4124269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |