Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 266,024 A→G 14.3% S22P (TCT→CCT)  ykfB ← CP4‑6 prophage, uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913266,0240AG14.3% 169.4 / 2.1 74S22P (TCT→CCT) ykfBCP4‑6 prophage, uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base A (52/9);  new base G (2/10);  total (55/19)
Fisher's exact test for biased strand distribution p-value = 7.41e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGGACGGAATAATGTACTGCTGGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATACACAGCG  >  NC_000913/265789‑266252
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                      
ccggACGGAATTATGTACTGCTGGTGATCCATCACTACGGTTATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCaga                                                                                                                                                                                                                                        <  2:132508/234‑1 (MQ=255)
   gACGGAATAATGTACTGCTGGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTTCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGAAAGAAGGGGCAtt                                                                                                                                                                                                                                  >  1:402871/1‑239 (MQ=255)
                  tgctgcTGATCCATCACTATGGAGATCGTAGTATCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGACACCATTCTGGTCCGTGTTCCCTGTGCAGCTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCTGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGACGAGGCCTAAAAGCTCGCGAGcct                                                                                                                                                                                                                 >  1:25106/1‑237 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGCTAGCAGAGGCATTAAAGCTCGCGAGCAg                                                                                                                                                                                                                 >  2:24552/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGGGCAg                                                                                                                                                                                                                 >  2:8889/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGGGCAg                                                                                                                                                                                                                 >  2:244637/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAg                                                                                                                                                                                                                 >  2:195975/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAg                                                                                                                                                                                                                 >  2:388745/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAg                                                                                                                                                                                                                 >  2:620801/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAAAGGCATTAAAGCTCCCGAGCAg                                                                                                                                                                                                                 >  2:726321/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGATTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCCGGATAGCAGAGGCATTAAAGCTCGCGAGCAg                                                                                                                                                                                                                 >  2:406060/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGGAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAACTACCGAGCAg                                                                                                                                                                                                                 >  1:839202/1‑239 (MQ=255)
                  tgctgGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGCAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGCCCGTAACCCTGCTGCCACAACCCCGGGATACCAGGGGACTAAAAGCtaccaacccg                                                                                                                                                                                                                  >  1:108011/1‑230 (MQ=255)
                  tgctgGCGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCGGACCGTAACCCTGCTGCCAGAACCCCGGGACAGCAATGGAATTAAAGCTCCCGAGccg                                                                                                                                                                                                                 >  1:91587/1‑237 (MQ=255)
                       gTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGCCCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCCCCCGAGCAGAaca                                                                                                                                                                                                             >  1:4540/1‑238 (MQ=255)
                       gTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGAGCAGTTGATGGTAAACGTCTTTCCGCTGTCTTCGGTCACGCTGTATTCCGTATTGCCCGGACCTTAACCCTGCTGCCAGAACCCCGGGATAGCACAGGCATTAAAgtcagcggaaggaaaa                                                                                                                                                                                                              >  1:785261/1‑223 (MQ=255)
                            ccATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGGGCAGTACACCCg                                                                                                                                                                                                         >  2:182252/1‑238 (MQ=255)
                              aTCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTTATACAAACCATTCTGGACCGGGTTGCCTGTGCAGTTGATGGTAAACATCTTTCCGCTGGCTTCGGTCACCGTGCATTCCGTATTGCCCTAGCCCTAGCCCTCCTCCCCGCACCCCGGGATAGTAAAGGTAATAAAGccacgggccatgaaacccgcccc                                                                                                                                                                                                      >  1:383220/1‑217 (MQ=25)
                                      ggTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAAcc                                                                                                                                                                                             >  2:624975/1‑239 (MQ=255)
                                             gtagtGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAg                                                                                                                                                                                      >  2:154055/1‑239 (MQ=255)
                                                gtgtCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGGGCAGTACACCCGCCAGCATAAACCGACTTAGGGa                                                                                                                                                                                   >  2:114714/1‑239 (MQ=255)
                                                 tgtCGTCATCGTCGGAACTGACCACTTGGTCACGGGCAAGGGTAAGAAAGACTGAAGCCTGATAGAACCCATTCTGGTCCGGGTTCCCTGTGCAGTTAATGGTAAACGTCTTCCCGCTGGCTTCGGTCACGCTGTAGTCCGTATTCCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACCCCCGCCAGCATAAACCGACTTAGTGa                                                                                                                                                                                   <  2:165725/238‑1 (MQ=255)
                                                   tcgtcCTCGTGCGAACTTCCCAGTTTGCCAGCGGCAATGGTAAGAAAGACTTAATGTTGATAGAAACCATTCGGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTCCCGGTGGCTGCGGTCACGCTGTATTCCGTATTGCCCTAACCGTACCCCTGCTGCCAGACCCCCGGGATAGCAGAGGCATTAAACCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAg                                                                                                                                                                                <  1:381617/239‑1 (MQ=255)
                                                      tcATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGCCCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCCCCAGCCTAACCCGACTAAGGGaaaaaat                                                                                                                                                                             >  1:818098/1‑235 (MQ=255)
                                                        aTCGAGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTCCTGCCAGACCCCCGGGATAGCAGAGGCATTAAAGCCGCAGGGCAGTAAACCCGCAACAGAAAACCGACTAAGGAAAAGCAtt                                                                                                                                                                            >  1:367393/1‑238 (MQ=255)
                                                             gCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGACTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGACCGGACCGTAACCCTGCTGCCAGAACCCCGGGACAGCAGAGGCATAAAGGCTCGCACGCGGTCCACCGCCCGGAAAAAACCGGATTATAGAAAGAAtggcaat                                                                                                                                                                       >  1:517999/1‑232 (MQ=255)
                                                                        cttttGTCTTGGGTAAGGGTAAGAAAGACTGAGTGGTGATAGAATACATGGTGGTCCGGGTTCCTGTGGTGGTTATAGGTAATCGTCTGTCCGCTGTCTGCGATCCCGTGTAATTCCGCATGGCCATGCCCTTAGCCCTTCTGGCAGACCCCCGGATTAGCGGGGCAATTAAGGCCCCGGAGCAGTAACTCCTCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCtt                                                                                                                                                           <  1:308939/236‑1 (MQ=255)
                                                                               cATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCTTATTGCCCTGACCGTAACCCTCCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCCGTACACCCGCCAGCATAAACCGACTTCGTGAAAGTATTgcacttctgttcccccttgccgtg                                                                                                                                                    >  1:892881/1‑216 (MQ=255)
                                                                               aaaggtacgggggAAAAAAAGAGTGAGGGCTTATAAAAACCATGCTGGGCCGGGTCCCCTGTGGCTTGTAGGGAAAACGTCTTCCCGCGGGCTGCGGTCACGCTGTATCCCGTATTGCCCGGCCCGAACCCCGGCTGCAAGACCCCCGGGATAGAAGAGGTATTAAAGCGCGCGAGCAGTCCACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCgt                                                                                                                                                     <  1:404427/229‑1 (MQ=255)
                                                                                                    aCTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAg                                                                                                                                >  2:657707/1‑239 (MQ=255)
                                                                                                    aCTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGCATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTc                                                                                                                                           >  2:404427/1‑228 (MQ=255)
                                                                                                    aCTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGAATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAACTCCCGAACAGTACCACCGCCAGAATAAACCGACTTAGTAAAAGGTGTGTCACTCTTGTCTCCTTTGTAGTTTGTTTTTTCCTGATGGTcgg                                                                                                                                >  1:713515/1‑237 (MQ=255)
                                                                                                    aCTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTAACGCTTTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCACGCGAGCAGTCCACCCGCCCGACTAAACCAACTTGGGGAAAGAATTTGAATTCTTACCCCCTTTGTCGGTGTTTTATTCCtaaatggaag                                                                                                                                >  1:389842/1‑230 (MQ=255)
                                                                                                     cTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCCCCAGCATAAACCGCCTTAGTGAAAGAATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCTTGATTGTAAgg                                                                                                                               >  1:107842/1‑239 (MQ=255)
                                                                                                                         ttCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGCCTTAGTGAAAGAATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCCGTacc                                                                                                            >  2:148295/1‑236 (MQ=255)
                                                                                                                         ttCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGCATTGTCATTCTTGTCTCCTTTTTCGTTGTTTTATTCCTGATTGTCAGGGTTCGCGGGCATCGGTAGc                                                                                                            >  2:767922/1‑238 (MQ=255)
                                                                                                                               tCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGCGGGTATCAGTAGCTGcccc                                                                                                      >  2:469119/1‑238 (MQ=255)
                                                                                                                                               gcagtggttgctaacgttttttCCGCTGGCTTCGGCCACGCTGTATCCCGTTTGCCCCGGCCCGTACCCCTGCGCCCAGAACCCCGGAATAGCAGGGCTATAAAACCTCCCGCGCAGTACCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCa                                                                                       <  1:831860/220‑1 (MQ=255)
                                                                                                                                                 ttGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTCGCTGCCCCATCAGTTTGCCTTCATggg                                                                                   >  2:831860/1‑239 (MQ=255)
                                                                                                                                                 ttGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTTCCCCATCAGTTTGCGGTCATgcg                                                                                   >  2:126336/1‑237 (MQ=255)
                                                                                                                                                  gtttGGTTAACGGTCTTCCCGTGGGCTGCGGCCACGCTTTTTGCCGTTTTGCCCAGCCCGAACCCTGTCTGCAAGACCCCCGGGATAGCAGAGCCTTTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATggg                                                                                   <  1:726321/236‑1 (MQ=255)
                                                                                                                                                   gATGGAAACCGTTTTGCCGTTGGCTTCGGTCACGCTGTATTCCGTATGGCCCGGACCGTAACCCTGCTGCCAAACCCCCGGGATAGCAGAGGCATTAAAGCCCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCg                                                                                 <  2:402871/239‑1 (MQ=255)
                                                                                                                                                       tttgtaaccgttttCCCGTGGCCTTGGTCCACTCTGTTTCCCGTTTTGCCTAGCCCGGACCCGTGCCGCCAGACCCCTGGCAAAGCGGGGGTAATAAAGCGCGCGAGAATTCCCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGt                                                                                <  1:195975/228‑1 (MQ=255)
                                                                                                                                                       ggTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTTTCAGGGTTCGAGGTATCATTAGCTGCCCCATCATTTTGCCGTCATGGGGGTACt                                                                             >  1:387981/1‑239 (MQ=255)
                                                                                                                                                       ggTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGt                                                                                >  2:718136/1‑237 (MQ=255)
                                                                                                                                                            cctgTCTTTCCGCTTGCTTGGTTCCCGTTGTACTCCGTATCCCCCTGACCTTACCCCTGCTGCAAACACCCGGAAAAAGCAGAGGAATTAAACCTCTCGAGCAGTACCCCCGCCAGCATAAACCGACTTATTGAAATTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCaa                                                                          <  1:862870/236‑1 (MQ=255)
                                                                                                                                                                         tgggctcgggccACGTTTTATCCCTTATGCCCCTGACCGAACCCCTGGCGCAAAACCCCCGGGATAGCAGGGGCATTAAAGCCCGGGAGCAGTCACCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCtt                                                              <  2:818098/228‑1 (MQ=255)
                                                                                                                                                                         tGGCTTCGGTCCTGCGTTATTCCGTTTGGCCCGACCCTTACCCCTGCTGCCAAACCCCGGGAATAGCAGGGGCTTTAAGGCTGCAGAGAAGTACCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCTCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCtt                                                              <  2:25106/238‑1 (MQ=255)
                                                                                                                                                                          ctgttttcggtccctgttttacccGTTTTGCCCTGCCCGTACCCCTGCTGCCAGACCCCCGGGAAAGCAGAGGCATTAAAGCCCGCGAGCAGTACCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCtt                                                              <  1:718136/217‑1 (MQ=255)
                                                                                                                                                                           gCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCg                                                                                          >  2:626577/1‑208 (MQ=255)
                                                                                                                                                                                ggTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATAc                                                      >  2:740827/1‑239 (MQ=255)
                                                                                                                                                                                         tGTATTCCGTATTGCCCGGACCGTACCCCTGTCGCCAGACCCCCGGGATAGCAGGGGCATTAAAGCCCGCGAGCAGTACCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGt                                              <  2:107842/239‑1 (MQ=255)
                                                                                                                                                                                                 cGTTTTGCCCTGCCCGAATCCCGCGTGCCAGACCCCCGGGATAGCAGGGGCATTAAAGCTCGCGACCATTCCTCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCAcctcc                                       <  2:892881/239‑1 (MQ=255)
                                                                                                                                                                                                   tATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCCGTAGCTGCCCCATACGTTTTCCGTCCTGGGCGTACTCAAAGAATTTTTTTTTGGTTTACGGGTCCGTCCcctccgg                                     >  1:133884/1‑237 (MQ=255)
                                                                                                                                                                                                   tATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGCGGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCAcccccgg                                     >  1:646205/1‑237 (MQ=255)
                                                                                                                                                                                                      tGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCCTCAGTTTGCCGTCATGGGCGTACTCAAAGAATTTTTCTTTGGTAACCGGGTCGGTCACCTCCTggaa                                  >  1:26214/1‑237 (MQ=255)
                                                                                                                                                                                                      tGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTa                                  >  2:289026/1‑239 (MQ=255)
                                                                                                                                                                                                      tGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGACGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTa                                  >  2:861323/1‑239 (MQ=255)
                                                                                                                                                                                                        cccTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGTAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGCTTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTCCTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTAt                                 >  2:457647/1‑238 (MQ=255)
                                                                                                                                                                                                          ccttccctgactctttgtcccAGACCCCGGGGATGCCAGAGCATTAAAAGCTCGGGACGTGTACCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTc                               <  2:270113/220‑1 (MQ=255)
                                                                                                                                                                                                           tGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCa                             >  2:735477/1‑239 (MQ=255)
                                                                                                                                                                                                             aCCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGt                           >  2:728601/1‑239 (MQ=255)
                                                                                                                                                                                                             aCCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGAATTTTTTTTTGGTATACGGGTCCTTCACCCCCTGGTTTTCCAGt                           >  1:43944/1‑239 (MQ=255)
                                                                                                                                                                                                                  aaCCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGCCATTGGCGTACTCAAAGTATTTTTCTTTGGCATACGGGTCCGTCCCCTCTTGGTATTCCCGTTTGAt                      >  2:396538/1‑239 (MQ=255)
                                                                                                                                                                                                                       tgctgcCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGGCCGTCACCCCCTGGTTTTCCAGTTTTATGTTAt                 >  1:835521/1‑239 (MQ=255)
                                                                                                                                                                                                                       tgctgcCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGAATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTa                  >  2:826093/1‑238 (MQ=255)
                                                                                                                                                                                                                        tgccgcacgAACCCGGTGAAAGCGGGGGAATAAAACCTCGCAAGCAGTCACCCCGGCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTAt                 <  2:133884/231‑1 (MQ=255)
                                                                                                                                                                                                                        tcggccaggAACCCGGGGATAGCAGAGGCATTAAAGCGCGCGAGCAGTCCCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTAt                 <  2:334419/231‑1 (MQ=255)
                                                                                                                                                                                                                         tcctccccacccccGGTGATGGCGGGGGCATTAAAGCCTGGGGCCAGTACCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTAt                 <  1:154055/229‑1 (MQ=255)
                                                                                                                                                                                                                          ctgcCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTACCCCCCTGTTATTCCAGTTTGATGTTAtgg               >  1:466381/1‑237 (MQ=255)
                                                                                                                                                                                                                                    cccGGGATAGCAGGGGCATAAAAGCGCGAGAGAAGTACCCCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATAcaca     <  2:108011/239‑1 (MQ=255)
                                                                                                                                                                                                                                      cGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATTGGCAATACACAg    >  2:713787/1‑238 (MQ=255)
                                                                                                                                                                                                                                       gggATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATACAAAgc   >  2:812778/1‑238 (MQ=255)
                                                                                                                                                                                                                                       gggATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATAAACAgc   >  2:343788/1‑238 (MQ=255)
                                                                                                                                                                                                                                          gATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAGGCATTTTTCTTTGGAATACGGGTCCGTCCCCTCCTGGTATTCCAGTTTGATGTTATCGGCATTaaacgagg  >  2:432527/1‑233 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                      
CTGGACGGAATAATGTACTGCTGGTGATCCATCACTACGGTGATAGTAGTGTCGTCATCGTGCGAACTGACCATCTTGTCATCGGCAAGGGTAAGAAAGACTGAATGCTGATAGAAACCATTCTGGTCCGGGTTCCCTGTGCAGTTGATGGTAAACGTCTTTCCGCTGGCTTCGGTCACGCTGTATTCCGTATTGCCCTGACCGTAACCCTGCTGCCAGAACCCCGGGATAGCAGAGGCATTAAAGCTCGCGAGCAGTACACCCGCCAGCATAAACCGACTTAGTGAAAGTATTGTCATTCTTGTCTCCTTTGTCGTTGTTTTATTCCTGATTGTCAGGGTTCGAGGGTATCAGTAGCTGCCCCATCAGTTTGCCGTCATGGGCGTACTCAAAGTATTTTTCTTTGGTATACGGGTCCGTCACCTCCTGGTATTCCAGTTTGATGTTATCGGCAATACACAGCG  >  NC_000913/265789‑266252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: