| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,154,491 | T→C | 20.2% | L159P (CTC→CCC) | mdtA → | multidrug efflux system, subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,154,491 | 0 | T | C | 20.2% | 121.5 / 4.3 | 72 | L159P (CTC→CCC) | mdtA | multidrug efflux system, subunit A |
| Reads supporting (aligned to +/- strand): ref base T (26/28); new base C (9/7); total (36/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTACCGCCGCTAATACCGTTACGGTGCGCAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTT > NC_000913/2154259‑2154722 | aTTACCGCCGCTAATACCGTTACGGTGCGCAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCCCGttt > 2:330767/1‑238 (MQ=255) gcTAATACCGTTACGGTGCGCAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTACCCAAAGCCCAAGGCCACCTGGCACAAGAT‑AAAGCCACGCTTGACAACGCCCGCCGGGACCTGGCGCCGTATCAAACACCGGCAAAAACCAATCCCGTTTCCCGCCCGGa > 1:237821/1‑239 (MQ=255) ttACGGTGCGCAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCCCGCTTGCCCACGCCCGCCGTGACCTGGCGCGTTATCAACAAATGGCAAAAACCACACCCGTTTCCCGCCGGGAGCTGGATGc > 1:689588/1‑238 (MQ=255) cgcAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTTTCAACAACTGGCAAAAACCAATACCGTTTCCCCCCAGGAGCTGGATGCCCAAAAGgc > 1:292347/1‑239 (MQ=255) cgcAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGgc > 2:314236/1‑239 (MQ=255) cAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCAAAAGCCCAGGGCCAACGGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGCCCTGGCGCGTTATGAACACACGGAACAACACAACCCCGGTCCCCGCCAGGAGCCGGAGGCCCAACaagggc > 1:563080/1‑234 (MQ=255) ccGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACACCTGGCAAAAACCAACCCCCTTTCCCGCCCGGGGCGGGATGCCCAACAGGCGCTgg > 1:716453/1‑239 (MQ=255) ccGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTgg > 2:690556/1‑239 (MQ=255) tGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGTAGCCCAACAGGCGCTGGTCAGt > 2:247081/1‑239 (MQ=255) aCGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGCT‑AAAGCCACGCTTGCCAACGCCCGCCCTGACCTGGCGCGTTATCAAAAACTGGCAAAAACCAATCCCGTTTCCCGCCCGGGGCTGGATACCCAAAAggacatggacaaggaa > 1:858767/1‑225 (MQ=255) gaatggttttatttttCCAGGAAGGCCGGCAGGAAAAGGAAGGTGTTTTACTGGAAAAAATT‑GCCCCAAGCCAGTTAAAAGTTGCATGAGCACAAGCCCGGGGCCACCGGGCAAAAGAT‑AAACCCCCGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGc < 1:314236/226‑1 (MQ=255) gCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCATGCGCGTTATCAACAACTGGCAAAACACAATCTCGTTTCCCCCCCGGACATGGGTGCCCAACGGGCCGTGCTCACTG‑AAAcacacgggcacaa > 1:121728/1‑227 (MQ=255) gCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAACCCACGCTTGCCAACGCCCACCGTGCCCTGGCGCGTTATCAACAACTTGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACACGCGCTGGACAGAG‑AACCCGAAGGCAcc > 2:159241/1‑237 (MQ=255) tACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCATTG‑AAACCGAAGGCAACATTAAg > 2:184469/1‑239 (MQ=255) aCATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAg > 2:863597/1‑238 (MQ=255) aCATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCCCGTTTCCCGCCAGGAGCTGGATGCCCaa > 2:757148/1‑202 (MQ=255) ccgagAAGGCCAGAGGGACAAAGCAGGCGTTTTACTGGCAAAAATT‑GCCCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCAAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCtgatg < 2:226057/235‑1 (MQ=255) ccAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCCAAAACCAATCTCGTTTCCCGCCAGGAACTGGATGCCCAACAGCCGCTGGGCAGTG‑AACCCGAAGGCACCCTTTATGCtgaag > 2:801966/1‑237 (MQ=255) aaGGCCGGCAGGTCAAGGCAGGCG‑TTTACCGGGAAAAATTGGACCCCAGCCAGTCCAAAGTTCAATTAGCACAAGCCCAGGGCCAACGGGCAAAAGAA‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGaag < 2:428537/237‑1 (MQ=255) gggCCAGGAGGTAAAAGCAGTCGTTTTACGGAGAGAATGG‑CACCCACCCCTGTTCAAAGTTGCATTAGCCAAACCCCGGGGCCACCGGGCAAAAGAA‑AAACCCACGTTTGCCACCGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGaagca < 1:516880/237‑1 (MQ=255) aGGCCAGCAGGTCAAAGCGGGGGATTACCGGGCAAAAATT‑GCCCCCAGCCAGTTAAAAGTTGAATTAGCACAAGCCCAGGGCCAACGGGCAAAAGAA‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGaagca < 2:716453/238‑1 (MQ=255) ggCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCCCTGGTCAGTG‑AAACCGAAGGCCCCATTAAAGCTGATGaagaaag > 1:193844/1‑239 (MQ=255) gCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCACGGTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGGG‑AAACCCAAGGCACCATTAAgagtgagaaagaaaac > 1:366414/1‑224 (MQ=255) cAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAATCCACGCTTGCCAACGCCCGCCGTCACCTGGCGCGTTATCAACCACTGGCAAAAACCAATCTCGGTTCCCGCCAGTGGCCGGATGCCCACAAGCCCCTGGCCCGGG‑AAACACCAGACACCATTAAGGACAAAGaagcaagagattcaaagg > 1:388806/1‑228 (MQ=255) gCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGCAGGAACCATTAAGGCTGATGAAGCAACCGTTTCCTGCGCGCAGcct > 1:158874/1‑237 (MQ=255) gCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCCCGTTTCCCGCCCGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCCAAGGCCCACTTAGGGCTGCTGAAGCCACCGCTGCCAGGCCGCAGCt > 1:55720/1‑238 (MQ=255) cacgTTGAAATTTGCATTGGCAAAAGCCAGGGGCCAACGGGAAAAAGAT‑AAACCCAAGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCAc < 2:767962/236‑1 (MQ=255) cATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACa > 2:330064/1‑130 (MQ=255) cATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGCCTGGAGCCGGATTACCGCACCAGCCGAGGGTcgc > 2:391665/1‑239 (MQ=255) ttACCACCACCCCGGGCCCATCTGGAAAAAAAA‑AACCCCACCTTTGCCAACCCCCGCCGTGCCCTGGCGCGTTACCAACAACGGGCAAAACCCAATCTCGGTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGt < 1:242013/239‑1 (MQ=255) tgagcccaggccaggcgCCACCTGGAAAAAGAT‑AAAGCCACGCTTGCCAACCCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGt < 2:292347/223‑1 (MQ=255) gCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGACGAAGCAAGCGTTGCCAGCCCGAAGCTCCAACTCGACCGGAGCCGGCTTACCGCACCAGCCCATggctgccttg > 2:425021/1‑230 (MQ=255) ccaACCCCCGGGCCCATGGGGAAAAGATAAAACCCCCGCTTCCCACCCCCCGCCGTGACCGGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt < 1:690556/238‑1 (MQ=255) aGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGACGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGGCGCACCCCAACGGGAGCCGGATTACCGCCCCAGCCGATGGTCGCGTTgggccaa > 1:499818/1‑234 (MQ=255) gCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGGCAGCGCGCAGCTGCAACTCGACTGGGTCCGGATTAACGGCCCAGCCGACggggcggttgggcccaa > 1:73127/1‑224 (MQ=255) ccAGGCCAAACTGGAAAAAAAA‑AAAGCCACGGTTGCCAAGCCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAg < 2:700888/238‑1 (MQ=255) gggCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAgg > 2:169768/1‑239 (MQ=255) aCTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGTGCTCAAGCAGGTTGATg > 2:752410/1‑239 (MQ=255) aCTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATg > 2:231589/1‑239 (MQ=255) aCTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCAGCAACTCGACTGGAGCCGGATAACCGCACCAGCCGATGGTCGCGTTGGGCTCAAGCAGGTTGATg > 2:880907/1‑239 (MQ=255) aCTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGCTGCCAGCGCGCCGCTGCAACCCGACTGGGGCCGGGTTACCGCCCCAGGCGATGGGCCCGTGGGGCTCACGCCGGTTGagt > 1:66664/1‑237 (MQ=255) taaaaCCCACTTTTGCAAACGCCCGCCGTGACCTGGCGCTTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCaa < 2:657492/237‑1 (MQ=255) ctacccccccttttccccccccccgccGGGACCGGGCGGTTTAACAAAAACGGGAAAAAACCAATCTCGTTCCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCaa < 1:169768/218‑1 (MQ=255) ataaaccccccttgcccAACGCCCGCCGTGACCTGGCGCGTTACCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCaa < 2:158874/224‑1 (MQ=255) acaaccgcctctttGCCACCGCCCGCCGCGACCTGGGGCTTTAGCAACACTGGGCAAACACCAATCTCTGTCCACGCCAGGAGTGGGATGCCCAACAGGCGCTTGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAAATCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCaa < 1:656662/227‑1 (MQ=255) aaGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAGTCAGGTTGATGTTGGTAACCAAAt > 2:252960/1‑238 (MQ=255) gCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGACGGTGGTAACCAAAACTCCAatg > 2:185925/1‑239 (MQ=255) gCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGACCCGGATTACCGCACCAGTCGACGGCCGCGTCGGTCCCAAGCAGGTTGATGTTGGTAACCAAATCACCAGGGGGGa > 1:700823/1‑239 (MQ=255) ccccccccccccgggcacTGGAGCGTTACCAACAATGGGCAAAAACCAACCTCGGTTCCCGCCAGGGGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCAGTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGAt < 1:250878/222‑1 (MQ=255) ccactgcccgccGTGACCTTGGGGTTTAACAAAAACCGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCTCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGAt < 1:180080/234‑1 (MQ=255) cAACGCCCGCCGGGACCTGGCGGGTTAGCAACAACGGGAAAAAACCAATCGCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATa < 2:827476/239‑1 (MQ=255) cccccccgccGTGTCCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATac < 1:391665/235‑1 (MQ=255) ccccccTTGCCCTGGCGCTTTTTTAACAACTGGAAAAACCCAATCTCGTTTCCCGCCAGGAGCTGGATGACCAACAGGCGCTGGTCAGTGAAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATaccac < 1:330767/239‑1 (MQ=255) tgcccTGGCGCGTTATCAACAACCGGCAAAAACCATTCTCGTTTCCCGACAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCg < 2:402075/236‑1 (MQ=255) gcccTGGAGCTTTATCCACAACTGGCAAAAACCAAACTCGTTGCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGAAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCgt < 2:699507/237‑1 (MQ=255) aCCGGGCGCGTTAACAAAAACTGGCAAAAACCAATCCCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCgt < 2:699506/238‑1 (MQ=255) cgggCGCGGTATAAACAACTGGCAAAACCCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCgtggt < 2:143650/237‑1 (MQ=255) tGGGGCGTTACCAACACCTGGCAAAACCCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCgtggtg < 2:182002/239‑1 (MQ=255) tGGCGGGTTACCAACAACTGGCAAAAGCCAATCCCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCgtggtg < 2:138913/239‑1 (MQ=255) ggggcgTTATCAACAACTGGCAAAAACCAATCCCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGa < 2:22090/236‑1 (MQ=255) ggCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAACCGTTGCCAGCGCGCAGCTGCACCTCGCCTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCCCAAGCAGGTTGATGTTGGTAACCAAAACTCAAGTGGTGATAAAACCGGGATCggggtgc > 1:574553/1‑238 (MQ=255) cgcgTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGAt < 2:66664/238‑1 (MQ=255) gTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCAcc < 2:168757/239‑1 (MQ=255) ttaacaaacacTGGAAAAACCCAAGCTCTTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCAcc < 1:247081/229‑1 (MQ=255) ttATCAACAACTGGGAAAAACCAATCCGGTTTCCCGCCAGGAGATGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGAAGAAGCAAGCGTTGCCAGCGCGCATCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATTGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCTcc < 1:159241/238‑1 (MQ=255) ttATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGTTCGTGGGGATCAccc > 2:207520/1‑239 (MQ=255) acgtgaaaaaaCCAATCTCTTTTCCCCCCAGGGGCTGGATGCCCAACAGGGGCTGGTCGGGG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATc < 1:8451/233‑1 (MQ=255) ggCAAAAACCAATCCCGTTTCCCGCCAGGAGCTGGATGCCCAACGGGCGCTGGTCAGTG‑AAACCGAAGGCCCCCTTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTa < 2:121728/239‑1 (MQ=255) cAAAACCCTATCCCGTTTCCCGCCAGGGCGTGGACGCCACACAGGCGCTGGTTAGTG‑AAACCGGAGGCACCATTAAGGCTGAAGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTAt < 1:131415/238‑1 (MQ=255) cAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTAt < 2:689588/238‑1 (MQ=255) cAAAAACCAATCCCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTAt < 2:578393/238‑1 (MQ=255) aCCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGAttt < 2:574588/239‑1 (MQ=255) | ATTACCGCCGCTAATACCGTTACGGTGCGCAGCCGCGTGGACGGCCAACTGATAGCGTTACATTTCCAGGAAGGCCAGCAGGTCAAAGCAGGCGATTTACTGGCAGAAATT‑GACCCCAGCCAGTTCAAAGTTGCATTAGCACAAGCCCAGGGCCAACTGGCAAAAGAT‑AAAGCCACGCTTGCCAACGCCCGCCGTGACCTGGCGCGTTATCAACAACTGGCAAAAACCAATCTCGTTTCCCGCCAGGAGCTGGATGCCCAACAGGCGCTGGTCAGTG‑AAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAACCAAATCTCCAGTGGTGATACCACCGGGATCGTGGTGATCACCCAGACGCATCCTATCGATTT > NC_000913/2154259‑2154722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |