| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,676,479 | G→C | 14.0% | G115G (GGC→GGG) | yphD ← | putative sugar ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,676,479 | 0 | G | C | 14.0% | 184.7 / 2.5 | 77 | G115G (GGC→GGG) | yphD | putative sugar ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (43/21); new base C (5/8); total (48/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.48e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAACACAAACAGCGCAAACAACACAATCATGATCAGCGCGGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCAGGGAGAAGACCAGAT > NC_000913/2676251‑2676714 | gaccacaAACAGCGCAAACAACCAAATCTGTACTAGCGCGTATCCCGGCACCCCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGc < 1:65884/235‑1 (MQ=255) caAACAGCGCAAACAACACAATCATGATCAGCGCGGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGGGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCTCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGCTACATTAAACACGCCCCGCAGCACTCCGGCCAGGGTTCCCATCACCGCCCCTAACACCacaacc > 2:618247/1‑234 (MQ=255) acacAATCATGATCAGCGCGGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACAACAGCAGGCACGcccc > 2:161571/1‑236 (MQ=255) tGATCAGCGCGGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCACAACCAGCAGGCACGCCACCGCCAGCGGa > 2:132419/1‑239 (MQ=255) tGATCAGCGCGGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCCCGCAGCACCCCCGCCAGCGTTCCCCTCCGCGCCCCTAACAGCAACACCAGCAGGCACGACACCGCCAGCgac > 1:496997/1‑237 (MQ=255) atgtccagccgggaacccggccacCGAGAAAATTGCCCGCCC‑GCCACGTCCAGCACCTCGTTTTCATCAACCGGCCCTGGCAGGGCGTTCGTCAAAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCCCAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCgg < 1:132419/218‑1 (MQ=255) cgcgGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACCTTAAACACGCCGAGCAGCACCCCGGCCAGCGTTCCCCTCACCGACCCAAACACAAAAACCACCCGGACCACCACCGCCACGGGAACTTcca > 1:66354/1‑237 (MQ=255) cgcgGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGAAGCAACGCCACCGCAAGCGGAACTTCaa > 2:352080/1‑239 (MQ=255) cgcgGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCACCAGGCCCGCCACCGCCAGCGGAACTTCaa > 2:779850/1‑239 (MQ=255) cgcgGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCACCAGGCACGCCACCGCCCGCggcagtccaa > 2:20517/1‑231 (MQ=255) cgcgGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCCCGCAGCACCCCGGCCAGCGTTCCCACCACCCACCCTAACAGCCCCACCACCCGGCCCGcccacccccccggcaattcaa > 1:657078/1‑220 (MQ=255) ggATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAACCTTGGAACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCCCCTAAACCCAAACCCCACCGGCACCCCCCCGCCCCCGGACATTCaaagt > 1:733991/1‑237 (MQ=255) acCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCCGCAGGCACGCCACCGCCACCGGAACTTCAAATTGCAGCAAAAAt > 2:881691/1‑238 (MQ=255) acCGAG‑AAATTGCCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAAGCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACCCCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATg < 2:513933/239‑1 (MQ=255) aaaaTTGCCCCCCCGGCCA‑CTCCCGCACCTCGTTATCAAAAACGGGCACGGGCAGGGCGTTCGTAAAAAACAGCACC‑ATTCCGCGCCGGGCGCGTCACAGCCTCAGTGTGA‑CAACGAAACTGGGCACATAAAACACGCCCCGCAGCACCCCGGCCAGCTTCCCCACCACCGCGCCTAACAGCAACACCAGAAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAgg < 1:874080/238‑1 (MQ=255) tGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCACCGGAACTTCAAATTGCAGCAAAAATGCCAGGcaca > 2:747632/1‑238 (MQ=255) tCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAAATTCAAATTGCAGCAAAAATGCCAGGCACACCg > 2:482167/1‑239 (MQ=255) cccAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAACGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAACGGAAATTCAAATTGCAGCAAAAATGCCCGGCACACCGAGAc > 1:823476/1‑239 (MQ=255) ccggctccTCGTTTTCATCAACCGGCACTGGCAGTGCGTTCGACATAACCAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGcc < 2:276024/230‑1 (MQ=255) ccAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCCCCGCCCGCGGAACTTCCAATTGCAGCAAAAATGCCAGGCACACCGAGAAAAAAAccaca > 1:756880/1‑238 (MQ=255) cGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAACATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCa > 2:107041/1‑239 (MQ=255) cGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATCCCAGGCCCACCGAGACAAAAGCCACCATCGGccc > 2:567934/1‑238 (MQ=255) cGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCCCGCCTAACAGCACCACCAGCAGGCACGCCACCCCCAGCGGAACTTCCAATTGCAGCAAAAATGCCAGGCACACCGAGCCAAAAGCCACCATCGGCCCa > 2:395658/1‑239 (MQ=255) ttCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAACCCACCATCGGCCCAACGc > 2:115068/1‑239 (MQ=255) aTCGGCACTGGCAGTGCGTTCGTCATAATCAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCCAAAATGCCAGGCACACCGAGACCACAGCCACCATCGGCCCACCGATGACATc > 2:370977/1‑239 (MQ=255) gcggggCGTTCGTCAAAAACGCCCCC‑ATTCCCCGCAGGGCCTCCCACAGCCCCAGTGGGG‑CAACAAAACTGGGCAATTAAAACCCCCCCGGCCGCCCCCCGGCCAGCGTTCCCACCAGCCGCCCTAACAGCAACACCAGCAGGCCCGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCAcc < 1:180360/233‑1 (MQ=255) cccttctttctgcaaaaccccccca‑ATTCCGCGAAGGGCCCCCACCAGCCCCATTTTGG‑CAACGAAACTTGTTACATTAACCCGCCCGCGTAGCACCCCGGCCAGGTTCCCCACCAGCCCGCCGAACAGCACCCCCAGCCGGCCCGCCACCGCCAGCGGAACTTCAAATTTCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCTCCATCGGCCCAACGCTGACATCAATTTCACCgg < 1:732366/218‑1 (MQ=255) tgTGCGTTCGTCAAAAACCCCCCC‑ATCCCGCACAGGGCTCCCCAACACCCCAGGGTGG‑CAACGAAACTTGGTCAATTAACCACGCCGCGCACCCCCCCGGCCACCTGCCCCACCAGCGCGCCTAACAGCAACCCCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCgg < 1:179731/237‑1 (MQ=255) cgTGGGTTCGTAAAAAACAGCCCC‑ATGCCCGGCAGGGCCCCCCCCAGCCCCAGTGGGG‑CAACGAAACTTGGTCAATTAAACCCGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACCCCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCgg < 2:112107/237‑1 (MQ=255) aGTGGGTTCGCCATAAAACGCCCC‑ATTCCGCGAAGGGCGCTCCACAGCCCCAGGGTGG‑CAACGAAACTGGGTACATTAAACACGCCGCGCAGCCCCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCgg < 2:256709/238‑1 (MQ=255) aGTGCGTTCGTCAAAAACAGCCCA‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCgg < 2:828467/238‑1 (MQ=255) aGTGCGGTCGTAAAAAACAGCCCC‑ATTCCGCGCAGGGCCCTCCACAGCCCCAGTGGGG‑CAACGAAACTGGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCgg < 2:733991/238‑1 (MQ=255) agtgctctcctaaaaaCACCCCCAATGCCGCCAAGGGCCGCCCACAGCCCCAGTGTGG‑CAAAGAACATTGGTACATAAACCCCGCCGCGCAGCCCCCCGGCCGGCCTTCCCTACACCGCCCCTAACAGAAACACCAGCAGGCCCCCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCgg < 1:523207/225‑1 (MQ=255) gCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCAAGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGTCAAACCGAGACAAAAGCCCCCACCGGCCCAACCCTTCACTCAATTTCACCGGAGat > 2:860190/1‑239 (MQ=255) gTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATaataat > 2:330567/1‑239 (MQ=255) gCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGCGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAAACaaggccat > 2:675156/1‑231 (MQ=255) cccc‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCCGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGcc > 2:493970/1‑194 (MQ=255) cccc‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGcca > 2:131140/1‑185 (MQ=255) cccc‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATACCAGGCACACCGAGACAAAAGCCACCCACGGCCCAACCCTACCAACAATTTCACAGAGGAaaataaaaaagataaaac > 1:22548/1‑227 (MQ=255) ttCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAg > 2:483691/1‑239 (MQ=255) cgcAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTCAACACGCAGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCaact > 2:724893/1‑136 (MQ=255) cgcAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCGAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCCGGCACGCCACCGCCAGCGGAACTTCAAATTGCCGCAAAAATGCCAGGCACACCGGGACAAAAGACCCCACCCGCCCAACGCCCACCACAATTTCACCGGAGATAAAAAACACCTCCATCACCCAgggagg > 1:813343/1‑235 (MQ=255) cgcAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCCGGCACACCCAGACAAAAGCCACCATCGGCCCAACGCTCACATACATTTCCCCGGCGATAATAAACAGCGCCCACACCCAggccgc > 1:257379/1‑239 (MQ=255) cgcAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCCCCGGGGATAATAATCAGCGTCATCGCCCAggcggc > 2:344215/1‑239 (MQ=255) cgcAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAAAGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAggcggc > 2:797082/1‑239 (MQ=255) cgcAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAACCACCATCAGCCCAACGCTGACATCAATTTCACCGGAGATAAAAATCAACGTCACCGCCCAggcggc > 1:9287/1‑239 (MQ=255) cgcAGGGCGCCCCACAGCCCCGTTGGGG‑CAACGAAACTTGGTACATTAACCACGCCGCGCAGCCCCCCGGCCAGCGTTCCCATCAGCGCCCCTAAAAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAggcggc < 2:496997/239‑1 (MQ=255) ggCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAACATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCCATTTCACCGGAGATAAAAATAAACGTCATCGCCCAGGCGGCAATcc > 1:111415/1‑239 (MQ=255) ggCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATACTCACCGTCATCGCCCAGGCGCCAATcc > 2:102861/1‑239 (MQ=255) cTCCACCG‑CCCAGTGGGGACAACGATATTTGTGACATCAAACCCGCCGCGCAGCACCCCGGCCAGCGTCCCCATCAGCCCGCCTAACGACAACGCCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGAAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAAt < 1:206653/239‑1 (MQ=255) cAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATACTAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCa > 2:6095/1‑238 (MQ=255) g‑CAACGAAGCTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCAAACGCCGAAATCAATTTCACCGGAGATAATAATAAGCGTCATCGCCAAGGCGGCAATCCCAAGGGGggcggaaccggcagc > 1:676077/1‑229 (MQ=255) g‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGGGGCAATCCCAACGGTGGCGGCATccccca > 2:860060/1‑233 (MQ=255) g‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGAAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCAGCGCgca > 2:541910/1‑238 (MQ=255) aaCGAACCGTGGCACATAAAACCCCCCCCGCAGCCCCCCGGCCGGCGTTCCCATCAGCGCCCCTAACAGCAACACCAGCAGGCACCCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCgcagca < 2:657078/239‑1 (MQ=255) aaccTTGGTACATTAAACCCCCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACTCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACg < 2:875707/234‑1 (MQ=255) cctgggTACATTAAACCGCCCGCCCAGCCCCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCa < 2:756880/235‑1 (MQ=255) acctGGTACATTAAACCCGCCGCGCAGCACACCGACCAGCGTTCCCATGCGCGCGCCTAACAGCAACCCCAGCAGGCCCGCCACCGGCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCa < 2:104460/236‑1 (MQ=255) aCTTGGTACATTAAACCGCCCGGGCAGCCCCCCGGCCAGCGTCCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCa < 2:209023/239‑1 (MQ=255) cTTGGTACATTAAACACGCCGCGCAGCCCCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCAt < 2:9287/239‑1 (MQ=255) cccgccccccccgccccccGGCCGGCTTCCCCACCCGCCCGCCTAACAGACACCCCAGCGGGCCCCCCACCGCCAGCGGAACTTCAAATTTCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAAt < 1:409849/224‑1 (MQ=255) cccccccgcccccccccccGGCCCGGCTTCCCTACACCGCCCCAAACAACAACACCGACAGCCCCCCCCCCGCCAGCGGAACTTAAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCAGCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAAt < 1:370096/224‑1 (MQ=255) acccgccgcGCAGCACCCCGGCCAGCGTTCCCACCAGCCCGCCTAACAGCAACCCCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAAt < 2:72836/236‑1 (MQ=255) acacGCCCCGCCTCTCCCCGGCCAGGCTTCCCAACAGCGCCCATACCACCAACACAAGCCGGCACGCAACAGCCAGCCGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAAt < 1:107041/239‑1 (MQ=255) acGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCCGGCGGCAATCCCAATGGGGGCGGACACGCCAAGCACCATCATCCGGGTATTCAATga > 1:734945/1‑239 (MQ=255) acGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGCCGGCAATCCCAATGGTGGGGGCAACGCGCCGAACGTTCCTCTGGTTATTCactca > 2:10655/1‑235 (MQ=255) gccgcGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCCACGCTAACATCAATTTCACCGGAGATAATAACCAGCGTCACACCCCAGGCCGCAAACCCAACTGGGGCGGCATCGCGCAGCCCGTTACTATGGTTATTCAAtagga > 1:431213/1‑235 (MQ=255) gccgcGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCCTCGCCCAGGCGGCAATCCCAATGGGGGCGGCATCGCGCCGCACGTTCATCTGGTTATTCaaataga > 1:228430/1‑234 (MQ=255) gccgcGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGACGGCAATCCCAATGGTGGCGGCATCGCGCAGACCGTTCCCCTAGGTATTCAATaagg > 2:539873/1‑238 (MQ=255) cgcgCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCACTTTCACCGGAGCTAATAATCAGCGGAATCGCCCAGCCGGCAATCCCAATGGTGGCGCCATCGCGCAGACCGGTCGCCTGGGTTTTCAATgagaga > 1:219785/1‑237 (MQ=255) cgcgCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAAtg > 2:640563/1‑194 (MQ=255) gcgcAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTCATTCAATGAGaaaa > 2:273731/1‑239 (MQ=255) ccccgggcactcGTTCCCACAACCGCCCCAAACAACAACCCAAGCTGCCCGCCCCCCGCCACGGGAACTTCAAATTGCAGCAAAAATGCCAGGCACAACGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAgg < 1:6095/228‑1 (MQ=255) cccccGGCGACGGTTCCAATCAGCGCGCCTAACAGCAACCCCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAgg < 2:813343/238‑1 (MQ=255) ccAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTc > 2:94303/1‑239 (MQ=255) ccggcttCCCATCCCGGCCCCTACCCGCAACCCCGCCGGGCACGCAACCACCCGCGGAACTTCCAATTGCAGCAAAAATGCCAGGCACCCCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAAGCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCa < 1:483691/234‑1 (MQ=255) tCCCATCAGCGCGCCTAACAGCCACACCAGCAGGCCCGCCCCCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCAGGgag < 2:629913/238‑1 (MQ=255) ccccggccagcCCAACACCACCCCCAGCAGGCCCCCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCAACGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCAGGGagaaga < 1:94303/230‑1 (MQ=255) cgcgcCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCCGGCGGCAATCCCCATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATCAGATAAAGCCAgggcggttaaggaggaaaacacaaa > 1:445330/1‑216 (MQ=255) | GAACACAAACAGCGCAAACAACACAATCATGATCAGCGCGGATACCGGCACACCGAG‑AAATTGTCCGCCCAGCCA‑GTCCAGCACCTCGTTTTCATCAATCGGCACTGGCAGTGCGTTCGTCATAAACAGCCCC‑ATTCCGCGCAGGGCGCTCCACAGCCCCAGTGTGG‑CAACGAAACTTGGTACATTAAACACGCCGCGCAGCACCCCGGCCAGCGTTCCCATCAGCGCGCCTAACAGCAACACCAGCAGGCACGCCACCGCCAGCGGAACTTCAAATTGCAGCAAAAATGCCAGGCACACCGAGACAAAAGCCACCATCGGCCCAACGCTGACATCAATTTCACCGGAGATAATAATCAGCGTCATCGCCCAGGCGGCAATCCCAATGGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCAGGGAGAAGACCAGAT > NC_000913/2676251‑2676714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |