| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,090,128 | A→C | 15.3% | T126P (ACC→CCC) | yggI → | Zn‑dependent metalloprotease‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,090,128 | 0 | A | C | 15.3% | 161.0 / 2.3 | 76 | T126P (ACC→CCC) | yggI | Zn‑dependent metalloprotease‑related protein |
| Reads supporting (aligned to +/- strand): ref base A (37/22); new base C (3/12); total (41/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.85e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTA > NC_000913/3089893‑3090349 | cgGAACGTCCTGGCTGAAAAGTGATGAATGTCGCCTCAATCCCTGTGTGCTGTGGGAAAACAGGGAAGCTTTTATGGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GGGGGTAGGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTCCGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCt < 1:659432/239‑1 (MQ=255)cgGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTCCCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCt < 2:573648/239‑1 (MQ=255)cgGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTTGAACTGCAATCCGTGCGTCGCAAC‑Acc < 2:78809/238‑1 (MQ=255)cgGAACGGCCTGGCTGGAAAGCTAAGAAATTCGCCTAAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTCCCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCt < 2:830334/239‑1 (MQ=255) aaCGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCTCACGAACTGGCACATTT‑GCTGGTATGGAAAAATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGGGGATGATGGAAAA‑CGAGCTGGGGGTTCCGGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTc > 2:509697/1‑238 (MQ=255) aaCGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGGGGATGATGGGAAA‑CGGGCTGGGGGTTCCCGCCCGTCGTACGCCTCAG‑TTCGAACTCAAATCCGGGGGCGGCAAA‑ACCTTc > 1:420867/1‑238 (MQ=255) ccTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGTTGGAAAC‑CGTGCAGGGTGTTCCAGCCCGTCGTACCAATAAG‑TTCGAACGGCAATCCGTGCGTCGCAAC‑CCCCCCCCCTAc > 1:870580/1‑239 (MQ=255) gctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGGGGA‑AGGGGATGATGGAAAA‑CGTGCTGGGGGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCG‑CGCCACAACCTTCCCCAActg > 1:558493/1‑235 (MQ=255) tggAAAACTATTAAAGTCGCCCTAAACCCGTTTTGCTGTTGGAAAACAGGGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTg < 1:572270/238‑1 (MQ=255) ggAAAGGTTAGAAATTCCCCTCAATCCCTTTTTGCTGGTGAAAAACAGTGAAGGTGTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCa < 1:549246/239‑1 (MQ=255) ggAAAGCTTTGAAATTCGCCCTAATCCCGTTTGGGTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGGACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCa < 1:706796/239‑1 (MQ=255) ggAAAGCTTGGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACATGGAAGCTTTTATTGAAGAAGTGGTCCCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACAGGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCa < 1:723492/239‑1 (MQ=255) aaaGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCaa < 2:709874/238‑1 (MQ=255) cTATGAAATTCGCCTCAAACCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGcc < 2:2904/239‑1 (MQ=255) tttaaaTTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCa < 1:105586/228‑1 (MQ=255) aTGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCa > 2:105586/1‑231 (MQ=255) tGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAgg < 2:324554/239‑1 (MQ=255) ctCGCCTAAATCCCGTTTTGCTGTTGGAAAACAGTTAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCGCATTT‑GCTGGTAGGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCAt < 2:852774/238‑1 (MQ=255) cGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGACATGCAATCCGTGCGTGGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCaccc > 2:856571/1‑236 (MQ=255) cAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGTAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGACCGCGAAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGCAAA‑CGTGCTGGGTGTTCCCGCCCGCGGTACGCATGAG‑TCCGAACTGCAAGCCGGGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCAAGGAGCATCAGCtt > 2:527638/1‑238 (MQ=255) aaTCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTa > 2:50857/1‑238 (MQ=255) tCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCg < 1:840877/239‑1 (MQ=255) atttGCAGTTGGAAGACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTGTGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGAATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑CCCTTCCCCTACCCCTGCAAGTGcccgcacactcaccttacccccac > 1:325698/2‑216 (MQ=255) tGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTAcgccg > 2:790984/1‑238 (MQ=255) tGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGGGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTCCGTCGCAAA‑CCCTTCCCCTACCCCTCCAAGAGCCAGGAGCATcgccctcacgaccgcccccacaaa > 1:707469/1‑216 (MQ=255) ggAAAACAGTGAAGCTTTTATTGAAGACGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CTTGCTGGGCGTTCCGGCCCGTCGTACGCATCAG‑TTCGAACTGAAATCCGCGCGTTGCAAC‑ACCTTCCCCTACCCCTGCAAGAGCAAGGCGCCACAGCTTACCTAACACCGCACTAATc > 1:527813/1‑239 (MQ=255) tttATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGcaa > 2:188235/1‑237 (MQ=255) tttATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCAGCGTAGCGCCCCATGGCAAAGAGTGGA‑CGTGGATGATGGAAAA‑CGTGCTGGGCGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCCGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCTCAATCGCATAGTTCGTGGGGa > 1:540806/1‑239 (MQ=255) ttATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑GCCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTAGGCCGCCATAATCGCGTAGTACCTGGCGAg > 2:544489/1‑239 (MQ=255) ttATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCACCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGa > 2:669958/1‑238 (MQ=255) ttATGGAAGGAGTTGTCCCGTACAAACGGGCACTGTT‑GCTGGTATGGAAACTTTGCGGCTTCTTAGAGCCACGTGGCAAAGGTGGGA‑AGTGGATGAGGGAACA‑CGTGTGGGGTCTTCCCTCCCGTCGTACCCCACAG‑TTCGAACTGCAACCCGTGCGTCGCAAC‑ACCTCCCCCTACCGCTGCAAGTGCAAGGGGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAg < 1:39989/239‑1 (MQ=255) tattgaaagggggggaCCGCACGAAGTGGCAATTGT‑GGGGGTAGGGAAACGTTTGGGCCGGGTTGCGCCAATGGGAAAAGGGTGGA‑AGTGGATGATGGAAAC‑CGTGCGGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAACCCGTGCGCCGCAAC‑ACCTTCCCCTCCCGCGGCAAGTGCCGGGAGAATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAgg < 1:517293/224‑1 (MQ=255) aTTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGGGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCCACCGCTGCAATGGCCGGGGGCATCAGCTTACCGAACCCCGCCATAAACGCGTAGGTCGGGGTGAggg > 1:409030/1‑238 (MQ=255) tttaagtatggttcccGCCCGAAC‑GGCTCATTTGGCTGTGATGGAAACTTTTCGTCCGTGTCGGCCCGATTGCCAAAGAGTGGA‑AGTTGATGGTCAAAAT‑CGTGCTGGGTCTTCCCGCCCGGCGTCCGTATCAG‑TTCGACCTGCAATCCGTGCGTCGCAAC‑TCCTTCCCCTACCGGTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGcc < 1:206951/225‑1 (MQ=255) ttGAAGAAGTGGTACCGCACGACCTGGCACATTG‑GCTGGTATGGAACCATTTCGGCCGCGTAGCGCCACATGGCAAAGAGGGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGcc < 2:420867/239‑1 (MQ=255) gaagTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGTTGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGGGCATAAGCCTACCGTACGCCCCCCTAAACGCGTAGTTCGTGGCAAGGCCGCCtt > 2:490937/1‑238 (MQ=255) gTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGACCTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGtctctc > 2:346024/1‑238 (MQ=255) ggTACCGAACGAACGGGCCCATTT‑GCTGGTATGGAAACATTTCGGCCGCGTGGCGCCAAATGGCAAAGAGTGGA‑AGGGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGAAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCGGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGc < 2:255128/238‑1 (MQ=255) agggacggcTGGCAATTTT‑GTTGGTATGGAACCTTTTCGGCCGGGTAGCGCCACATGGCAAGGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTCCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑CCCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGtt < 2:412245/231‑1 (MQ=255) cACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCGGTGTTc > 2:445535/1‑238 (MQ=255) aCTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGCGCATCAGCTTACCGTACCCCGCCATAATCGCGACGTTCGTGGGGGGGCGGTCCATCGCtggtttccccggc > 1:491571/1‑228 (MQ=255) aCTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTa > 2:754336/1‑202 (MQ=255) aCTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGCGTTCACTGCg > 2:693378/1‑239 (MQ=255) tt‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGCCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATc > 2:596456/1‑187 (MQ=255) gCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGGAGTTCGGGGCGAGGCCGTCTATCGCGGGGTTCACTCCggggcatgtgtct > 1:412245/1‑228 (MQ=255) aTGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTTCGGTGAACAGCTGGTTGCGa > 2:307342/1‑239 (MQ=255) tttCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCCCGTAGTTCGTGGCGAGGCCGTCt > 2:62749/1‑194 (MQ=255) tccctggggcccaacggggaaatgagTGGA‑AGGGGTTGAGGGAAAG‑CGTGCTGGGGTTCCCCGCCCGTTGCCCGCCTCGG‑TCCGAACGGCAATCCGTGCGCCCCAAC‑CCCTCCCCGCTCCGCGGCAATGGCCGGGAGCAGCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGaa < 1:583071/216‑1 (MQ=255) cgTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTCCGCCGCCATAGTCGCGTAGTTCGTGCCAAGGCCGCTTACCCCTGTGTTCCCTCCGGGGAACAGCTGGTTGCGAAAAACCCCTCTGAACTAt > 1:701465/1‑239 (MQ=255) tAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCCTCTATCGCTGGTTTAACCCCGGGGAACAACGGGTTGCGAAAAAACAACATGAAcacaaa > 1:852332/1‑234 (MQ=255) caTGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCCCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACAATCTGAACTTTCAGGAACtt > 2:770209/1‑238 (MQ=255) gggCAAAG‑GTGGAGAGTGGATG‑TGGAAAACCGTGCGGGGTTGCCCCCCCCCTCTTCCGC‑CCAGTTTCGAAGCTCAATCGGTGCGTCCCAAC‑ACCTTCCCCTCCCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTCCGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTcc < 1:20947/238‑1 (MQ=255) ggga‑agtggtTGGTGGAAAA‑CGGGCTGGGTGTTCCCCCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCGGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGc < 2:719878/237‑1 (MQ=255) ga‑agtggaTGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGACCTATCAGGAACTTTCCTGATCTGGCTGa > 2:67244/1‑239 (MQ=255) a‑aggggaTGATGGAAAC‑CGGGCTGGGTTTCCCCGCCGGTCGTCCGCATCAG‑TTCGAACGGCAATCCGGGCGTCGCAAC‑CCCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGa < 2:852332/238‑1 (MQ=255) ggaTGATGGAAAA‑CGGGCTGGGTGTCCCCGCCCGTCGTACGCAGCAG‑GTCGAACTGCAATCCGTGCGTCGCACC‑CCCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCa < 2:409030/239‑1 (MQ=255) gatgatGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTCGTTGCAt > 2:336550/1‑239 (MQ=255) gatgatGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCGGAACTATCAGGAACTTTCCTGATCTGGCTGATTGct > 2:756890/1‑237 (MQ=255) tgGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCaa > 2:708065/1‑239 (MQ=255) aaaaccgtgtGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAACCCGTGCGGCGAAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCaaaa < 2:149697/229‑1 (MQ=255) aa‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAGTAACCATCTGAACTATAAGGAACTTTACTGATCTGGCTGATTGCATACCAAACCAg > 2:315792/1‑239 (MQ=255) aa‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGAGCTGGCTGGTTCAGTACCAAAACa > 2:746097/1‑238 (MQ=255) cTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCTTACCAAAACAGCTTTc > 2:559604/1‑238 (MQ=255) tGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGACCTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCg > 2:437670/1‑238 (MQ=255) ggtttcccccccccgcgtCCGCATCGC‑TTCGAACCGAAATCCGGGCGCCGCAAC‑ACCTCCCCCTCCCGCTGCAAGTGCCAGGAGCATCAGCTTCCCGGCCGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAGACAGCTTTCGCTa < 1:621527/224‑1 (MQ=255) cccgTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCACTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGCGGCCGTCGCTCGCTGTGTTCACTGCGGTGACCAGCATGTTGCGAAATAACCATATGAACTCTCAGGAACTTTCCTACTGTGGGTGATTGCATACCAAAACAACTTTCGCAAcagttctgg > 1:817906/1‑230 (MQ=255) ccttcctACGCATCAG‑TTCGAACTGGAATCCGGGCGTCGAAAC‑CCCATCCCCTACCGCTGCAAGTGCCAGGAGAATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCCAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt < 2:299470/233‑1 (MQ=255) ccgTCGTTCGCATAAG‑TTCGAACTTCAATCCGTGCTTCGCAAC‑CCCTTCCCCTACCGCTGCAAGTTCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt < 2:71196/239‑1 (MQ=255) ccctcggtccccatcgttccGAACTGCACTCCGTGCGCCGCACC‑CCCTTCCCCTCCCCCTGCAAGTGCCAGGGGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc < 2:870580/220‑1 (MQ=255) tCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGTCCGTTTTAACCCg > 2:267907/1‑239 (MQ=255) ttcaccctcaactCCGTGCGGCGCAAC‑CCCTCCCCCTCCCGCGGCAAGGGCCAGGGCCACCACTTTCGCGTCCGCCCGCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGt < 1:693009/227‑1 (MQ=255) ttCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTCCGTTGCTGGCCCGTTTTAACACggcga > 2:440576/1‑236 (MQ=255) ttCAAACGGCATCCCGGGCGCCCCACC‑CCCTCCCCCCACCCGGGCAAGGGCCAGGAGCATCAGTTTCCCGTCCGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGt < 1:839603/239‑1 (MQ=255) tcaaacctcatgcagggCGTCGCAAC‑CCCTTCCCCTACCGCTGCAAGTGCAAGGAGCATCAGCTTACTGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGt < 2:734175/222‑1 (MQ=255) tCGAACTGCAACCCGTGCGTCCAAAC‑CCTTTCCCCTTCCGGTGAAGGTCCCAGGAGCTTCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGt < 2:491571/238‑1 (MQ=255) aaTCCGTGCGTCGCACC‑CCCTTCCCCTGCCGAGGCAATGGCCAGGAGCATCAGCTTACCGTACGCCGCCCAAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTa < 2:896809/239‑1 (MQ=255) | CGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTT‑GCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGA‑AGTGGATGATGGAAAA‑CGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAG‑TTCGAACTGCAATCCGTGCGTCGCAAC‑ACCTTCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTA > NC_000913/3089893‑3090349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |