Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_000913	1,619,080	Δ35 bp	12.0%	intergenic (‑172/‑6)	marC ← / → marR	UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1619079	41 (0.770)	6 (0.120)	6/402	NT	12.0%	intergenic (‑171/‑41)	marC/marR	UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance
	?	NC_000913	1619115 =	48 (0.930)					intergenic (‑207/‑5)	marC/marR	UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance

TTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATG  >  NC_000913/1618892‑1619341                                                                                                                                                                                                                                |                                                                                                                                                                                                                                   ttAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCAAGGGCAACTaa                                                                                                                                                                                                                                 >  1:196597/1‑227 (MQ=255)           caccaccagccccaggccaattgctttaaacaaatctaacattggtggttgttatcctgtgtatctgggttatcagcgaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttccctgggcaaCTAATgtgaaactg                                                                                                                                                                                                                       >  2:487218‑M2/214‑224 (MQ=255)                   ggtggtTTTTATCCTGTGTATCTGGGTTAGCAGGGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCCCTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGAt                                                                                                                                                                                                              <  1:396822/228‑1 (MQ=255)                   ggtggtTGTTATCCTGTTTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGAt                                                                                                                                                                                                              <  1:361891/228‑1 (MQ=255)                   ggtggtTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTAATTCATTTGACTTATACTTGCCTGGGCCATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGAt                                                                                                                                                                                                              >  2:638168/1‑228 (MQ=255)                    gtggtTGTTATCCTGTGTATCTGGGATATCAGCGAAAAGTATAAGGGGTAAACAATGATAAAGTGTCACTCTTTAGCTATCCTTGCATCGCATTGAACAAAACTTGAACAGATTTAGCAAAACGTTGCATCGTGCAATTCATTCATTTGAGTTATACTTGCCTGGGCAATATTATCCCCTGCAACCAAATACTTTCCAGGGGAACTAATGGGAAAAGGACCAGcaaat                                                                                                                                                                                                             >  1:432988/1‑224 (MQ=255)                        aggccaattgctttaaacaaatctaacattggtggttgttatcctgtgtatctgggttatcagcgaaaagtataaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcatttcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCtttt                                                                                                                                                                                                         >  1:60826‑M2/201‑228 (MQ=255)                                   tgtATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAatt                                                                                                                                                                                               >  2:50768/1‑227 (MQ=255)                                   tgtATCTGGGATATCAGCGAAAAGTATAAGGGGTCAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATAGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCACTATTATCCCCTGCAACTAATTACTTGCCAAGGCAACTAACGTGAAAAGTAACATCTATCTGTTCAATGAActta                                                                                                                                                                                              >  1:603395/1‑228 (MQ=255)                                        cTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCa                                                                                                                                                                                         <  2:196597/228‑1 (MQ=255)                                        cTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCa                                                                                                                                                                                         >  2:153720/1‑228 (MQ=255)                                          gggTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCAtt                                                                                                                                                                                       >  2:514741/1‑228 (MQ=255)                                                   gCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCtt                                                                                                                                                                              <  2:507757/228‑1 (MQ=255)                                                    caaaaaGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATCCTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTa                                                                                                                                                                             <  2:206211/226‑1 (MQ=255)                                                     gAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGTTTaa                                                                                                                                                                            >  1:438023/1‑228 (MQ=255)                                                       aaaGTGTAAGGGGTTTACATGGATAAAGTGTCACCCTTTAGCTTGCCTTGCCTCGCATTGAACAAAACTTGAACCGATTTAGGAAAACGTGGCATCGGTCAATTCATTCATTTTCCTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATc                                                                                                                                                                          <  1:290212/228‑1 (MQ=255)                                                                   gTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAt                                                                                                                                                              <  2:129729/228‑1 (MQ=255)                                                                   gTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAt                                                                                                                                                              <  2:389297/228‑1 (MQ=255)                                                                           ggATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTAGCTTAATCCCTATGGTTAATCAtaaaaa                                                                                                                                                      >  1:111169/1‑228 (MQ=255)                                                                                 aGTGTCACTCTTTAGCTAGCCTTGCATCGCATTTAACCAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCg                                                                                                                                                <  1:164858/228‑1 (MQ=255)                                                                                  gtgtCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGACCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCACATTGTAAATCAACAAAAAGATCGc                                                                                                                                               >  1:244253/1‑228 (MQ=255)                                                                                     tCAATCTTTAGCTAGCCTTGCATCGCATTGCACAAAACTTGAACCGCTTTAGCAAAACGGGGCATCGGGCAATTCATTCATTTGACTTATACTTGCCTGGACAATATTCTCCCCTGCAACTAATTACCTTCCAGGGAACATGATGTGACAAGTACCCGCGAACTGGTCAATGAACTTAATCCATTGGTTCACTTAATCAATAAGGTTaacacacagaaacagcgcatg                                                                                                                                            >  1:128821/1‑209 (MQ=255)                                                                                     agcgaaaagtttaaggggtaaacaaggataaagtgtcactctttagctagccttgcatcgcattgaacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTg                                                                                                                                            <  1:589906‑M2/89‑1 (MQ=255)                                                                                         tttttACCTTGGCTTGCATCGCATTTAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTa                                                                                                                                        <  1:35688/226‑1 (MQ=255)                                                                                                   gcCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCATTTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAACGATTTGTTCAATGAAATCATTCCATCGGGTCGCTTAATCCATATGTGTAATCAACAGCAAAATCCCCTCCTTAACgggaaact                                                                                                                              >  1:408436/1‑221 (MQ=255)                                                                                                   gcCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTACCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTCTTCCATTGGGTCGCTTAATCCTTATGGTTAATCAGAAGAAAGATCGCTTGCTTAACGAGTATCt                                                                                                                              >  2:642925/1‑228 (MQ=255)                                                                                                                   aaCAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGACGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATAtt                                                                                                              >  2:46363/1‑228 (MQ=255)                                                                                                                       aaaCTTTACCCGATTTACCAAAACGTTGTATCTGTCAATTTATTCATTTGCCTTATACTGTCCTTGGCAATATTATTCCCTGCAATTAATTACTGTACAGTGCTATTAATGTTAAAATTACCAGCGTTTTGTTCAATGAAATTATTCCATTGGGTCGCTTATTCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCCCCGCTGGATATTACcg                                                                                                          <  1:320398/228‑1 (MQ=255)                                                                                                                        aaCTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACcgc                                                                                                         >  2:516043/1‑228 (MQ=255)                                                                                                                           tttaaCCGATTTAGCAAAACGTTGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGc                                                                                                      <  2:280543/225‑1 (MQ=255)                                                                                                                                           aaaCGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGGGCCACAGTTTAAGGggccc                                                                                      >  1:248110/1‑226 (MQ=255)                                                                                                                                            aaCGTGGCTTCGGTCAATTCATTCATTTGCCTTATCATGGACTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTCCCGCGGCACAGTTTAAGGtgctct                                                                                     <  1:33603/228‑1 (MQ=255)                                                                                                                                                      aacaaaacttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAGTAAAGATCGCTTGCTTAACGCGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCg                                                                           >  2:641841‑M2/75‑228 (MQ=255)                                                                                                                                                             cttgaaccgatttagcaaaacgtggcatcggtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGcgcg                                                                    <  2:60826‑M2/161‑1 (MQ=255)                                                                                                                                                               ttttcattgtgcTTTTACTTGCCTGGTCAATATTCCCCCCGTCAACTAATTTCTTGCCAGGGAAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCgcggc                                                                  <  1:497044/217‑1 (MQ=255)                                                                                                                                                                  tcattTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCgcggcgcg                                                               >  2:644025/1‑226 (MQ=255)                                                                                                                                                                     tttGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGGGTAt                                                            >  2:496336/1‑228 (MQ=255)                                                                                                                                                                                   gCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGTTATTACCGCGCCACAGTTTAAGTTGCTCTGCTCTATCCGCTGGgcgg                                                                   >  1:249624/1‑207 (MQ=255)                                                                                                                                                                                    ccTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCgcggc                                                                  <  2:249624/207‑1 (MQ=255)                                                                                                                                                                                       gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGaa                                          <  1:516043/228‑1 (MQ=255)                                                                                                                                                                                        ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGaaa                                         <  2:438023/228‑1 (MQ=255)                                                                                                                                                                                        ggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTCCGCGGCGTGTATTACTCCGGTTGAAcgtaaa                                         >  1:39417/1‑223 (MQ=255)                                                                                                                                                                                           gtcaattcattcatttgacttatacttgcctgggcaaCTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGAGATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCCCGGCGTGTATTACCCCGGTGTAACTGaaaaa                                       >  1:175578‑M2/38‑227 (MQ=255)                                                                                                                                                                                                  tCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCgg                                                                                                       >  1:367552/1‑156 (MQ=255)                                                                                                                                                                                                  tCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGGATTgt                               >  2:499467/1‑228 (MQ=255)                                                                                                                                                                                                  tCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCCCGGCTCAGTTTAAGGTGCTCTGCTCTATCCACTGCGCGGCGGGGATTACTCCCGTTGAACTGAAAAAGGTATTgt                               >  1:487414/1‑228 (MQ=255)                                                                                                                                                                                                   ccccTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGc                                                                                                      <  2:367552/156‑1 (MQ=255)                                                                                                                                                                                                      catcaacaaATTACTGGCCCGGGCAACTAATGTGAAAAGTCCCAGGGATTTTTTCAATGAAATTATTCCATTGGGGCGCTTAAACCATATGGTTAATCAGAATAACGATCGTCTTCTTAACGAGTATCTGTCTCCGGTGGATTTTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTggcggt                           <  1:644025/225‑1 (MQ=255)                                                                                                                                                                                                      cTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgtcgg                            <  2:111169/227‑1 (MQ=255)                                                                                                                                                                                                       tGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTACGGTGCTCTGCTCTATCCGCTGCGCGGCGTGAATTACTCCGGTTGAACTGAAAATGGACTTgtcggt                           >  2:654130/1‑227 (MQ=255)                                                                                                                                                                                                       tGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTgtcggt                           >  2:179491/1‑227 (MQ=255)                                                                                                                                                                                                              aaTTACTTGCCAGGGCAACTTATTGGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTgg                   <  1:46363/228‑1 (MQ=255)                                                                                                                                                                                                                   cTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGc               >  1:49786/1‑227 (MQ=255)                                                                                                                                                                                                                    ttGCCAGGGCAACTACTGTGAAACGTACCAGCGATCTGTTCAATGCAATTATTCCCTTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGACATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTTCGCGGCGCGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGATCTGGGAGCa              >  2:186189/1‑227 (MQ=255)                                                                                                                                                                                                                    ttGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCa              <  2:49786/227‑1 (MQ=255)                                                                                                                                                                                                                     tggcAGGGCAACTTATTGAAAAAGTAACATGGATCTGTTCAATGAAATTATTCCAGTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACt            <  1:638168/225‑1 (MQ=255)                                                                                                                                                                                                                      gCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGCATTGTCGGCCGACCTGGGGGCa              >  2:284190/1‑225 (MQ=255)                                                                                                                                                                                                                         aGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGAATTGCCGGTCGACCCGGGAGcccggccc        >  1:531857/1‑221 (MQ=255)                                                                                                                                                                                                                          gggccaCTAATGGGAAAAGTACCCGCGAATTTGTCAATGAAATTATTCCATTGGGTCGCTTAACTCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGAccc       <  1:179491‑M2/222‑1 (MQ=255)                                                                                                                                                                                                                          gggcacATAAGGTGAAAAGGTCCAGGGGTTTGTTCAAAGAAATTAATCCATGGGGCTGATTAAGCCTTATGGTTAATCAGAGTAAAGGTCGCCGGCTTAACGAGTATCTGTCTCCGCTGGATAGTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGAccc       <  1:186189‑M2/222‑1 (MQ=255)                                                                                                                                                                                                                               aCTAATGTGAAAAGGACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCGCCGCTGGATATTACCGCGGCTCAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATg  <  2:487414‑M2/227‑1 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                   TTAAACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAGGGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTTGAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATG  >  NC_000913/1618892‑1619341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.