| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,125,362 | T→G | 23.1% | H483P (CAC→CCC) | priA ← | Primosome factor n' (replication factor Y) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,125,362 | 0 | T | G | 23.1% | 95.6 / 6.0 | 57 | H483P (CAC→CCC) | priA | Primosome factor n' (replication factor Y) |
| Reads supporting (aligned to +/- strand): ref base T (16/25); new base G (9/7); total (25/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGAT > NC_000913/4125141‑4125588 | gttaggCACCCAGCGTCACCTCCGGGAAAGGGTGCCCTTCCGGCACCATTTGGTTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTTCTTCTGCCA‑TTTGCGGTCCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTgg < 1:360359/223‑1 (MQ=255) cacccAGCGCCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGGGTACCAATCAAAATCCGCGCGCCG‑CCGGGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGc < 2:564440/225‑1 (MQ=255) aaCCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCG‑CAGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGCGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGACCAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCAAGCCCCACGGGGACCAG‑GGGCGTGGAccc > 2:459307/1‑225 (MQ=255) ccAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGGGTCTGTTCAAGGTGTTCGGTGCCCAGGCCCCCGGGGGACAG‑GGGCGGGGACACGCAgg > 1:398903/1‑228 (MQ=255) ccAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAg > 2:9991/1‑227 (MQ=255) ccAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGGCTGTTCAAGCTGTTCGGGGGCCCGCCCCCAGGGGACCAG‑GGGCGCGGAAACCCAgg > 1:563286/1‑228 (MQ=255) cGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGGGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAgg > 2:180653/1‑228 (MQ=255) tttCGCCCGCTTTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCt < 2:570159/227‑1 (MQ=255) atccGCCAGCATTTGTGCACCCATCAAAATCCGCGCGCCG‑CCGCGATGTGCTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGGGGTCGATTCGAGAAAGGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCt < 2:571037/224‑1 (MQ=255) ttCGCCAGCATTGGTGTCCCAATCAAAATCCGCGCGCCG‑GCGCGATGTACTTCGGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGa < 2:269163/228‑1 (MQ=255) aGCATTTGGGTACCAATCAAAATCCGCGCGCCG‑GCGCGATGTACTTCGGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGGTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTc < 2:398903/227‑1 (MQ=255) cATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGCACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGGGCCCAGCCCCACGGGGACCAG‑GGGCGTGGAAACGCAGGAAGGGCCCGG‑GCGGGGCACCGGACGCGGAGTGTcaaa > 1:269163/1‑226 (MQ=255) cATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCCTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTCCGGTGCCCCGCCCCCCGGGGACCAG‑GTGCGTGGAACCCCCGGAAGGGCCCTG‑GCCCGGCCCCGGAccgtgaacgtacca > 1:253499/1‑215 (MQ=255) tACCAATCAAAACCCCGGCGCCG‑GCGGGGGGTGCTTTCGCAA‑GTTGCTGTTCCAGCGCCCTTTGGCGGCGGGGGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGc < 1:536837/228‑1 (MQ=255) ccAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCCGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GGGCGAGGAACCGCCGGAAGGGCACTG‑GGGCGGGCCCGGAAGCGGCCTGGCAC‑AGGGGGGGGAg > 1:575139/1‑228 (MQ=255) ccAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCCCGAGCGTCTGTTCAAGCTGTTCGGGGGCCACCCCAACGGGGCCCAG‑GGGCGTGGAACCCCAGGAAGGGCCATGCGCGGGGCCCCGG‑CCCTGACTGGACA‑AGCGGTGGCAg > 1:247182/1‑228 (MQ=255) cgcgcCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCCCGGGGACCAG‑GGGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCCCCGGACGCTAGCTGGCAC‑AGGGGGGGCCACGCAgcgtgggcag > 1:140999/1‑219 (MQ=255) cgcgcCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCCCGGGGACCAG‑GGGCGTGGAACCCCAGGAAGGGCCCCG‑GCCCGGCCCCGGGCGCTTAC‑GGCACAAGTGGGGGCAgcgccaggggggggg > 1:593581/1‑217 (MQ=255) cgcgcCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTAAC‑AGCGGTGGCAGCGCATGTGGtgctg > 2:135446/1‑228 (MQ=255) cccgccgcccgCGTTGTTCTTTGGCCG‑GTTGCTTGTCCCGGGCCCCTTTGGGGCTGGTGGTATCGCGGGCGATTCGAGAAAGGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGtgct < 1:420566/226‑1 (MQ=255) cggATGTTCTGCTGCCA‑GTTTCTGTACCGGCTCCCTTTTGCGGCTGGTGTACTCGCGGTAGAGCTGGGAAATGGGTCCGCCCGGGACCAACGGCGCGGGCTCCTGTTCGAGCGGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCTTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATg < 1:473338/226‑1 (MQ=255) tatgtctttCTGCCC‑GTTGCTGTTCCGTCGCCCCTTTGCGGCTGGTGGTCTCGCGGTGGATCCGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa < 1:870/221‑1 (MQ=255) gtttttctttttcccgTTGCTGTTCCCGCGCCCCTTTGGGGTTGGTGGTGTCGCGGTCGGTACGAGAAATGGGCACGCCGGGCAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa < 1:557521/213‑1 (MQ=255) aTGTACTTCTGCCT‑GTTGCGGTTCCAGCGCCCCGTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa < 2:561460/227‑1 (MQ=255) tGTATTTCTGCCA‑TTTGTTGTTCCCGGCCCCCTTTGCGGCTGGTGGTATCGCGGGCGATACGAGAAATGGGCACCGCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTGCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGc < 1:9991/228‑1 (MQ=255) gTACTTC‑GCCAGGTTGCTGTGCCAGCGCCCCTTTGCGGGTGGGGGGATCGGGGGCGATACGAGAAAGGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTGCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGc < 1:6865/227‑1 (MQ=255) a‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCCGATGGTGCTGCGCCTGTTGAAGCGTGTAGGAGTGa > 2:387554/1‑228 (MQ=255) tGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACCCTGACTGTCAC‑AGTGGGGGCAGCGCAGATGGGGCTGCGCCCGATGCACCGCGTAGAAGGGATCg > 2:650289/1‑228 (MQ=255) gcCCCTTTGGGGCTGGGTGTATCGGGGTCGATACGAGAAATGGGCACGCCGGGGAAACACGGCGCGAGCGTCTGTTCAAGCTGGTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCa < 2:408368/227‑1 (MQ=255) ccTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCCCGGGGACCAG‑GTGCGGGGAACCGCAGGGAGGGCACTT‑GCCCGGCACCGGCGGCTGCCTGTCAC‑GGTGGCGGCAGCGCGGATGGTGCTGCCCCTCAGTCAGCGGGGAGGAGTGATCGCAACGGGGGGAtggg > 1:648683/1‑225 (MQ=255) ttGCGGCTGGGGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGc < 2:454046/227‑1 (MQ=255) ggggtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCca < 2:593581/226‑1 (MQ=255) ggTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGCCGTGGc > 2:392444/1‑228 (MQ=255) gTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCCCAGTCGTGGca > 2:92536/1‑228 (MQ=255) gTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGACGTGGca > 2:439282/1‑228 (MQ=255) gATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGACGGGGcaca > 2:602303/1‑227 (MQ=255) gATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGGGTAGTAGGGATCGCAACGTGGGCATTAGGCAATCCAGCCCCAGGCGGGGcaaga > 1:97985/1‑225 (MQ=255) gggCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GGGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGgcgc > 2:575856/1‑228 (MQ=255) aacaacGGGGCGAGCGGCTGTTCAAGCTGTTCGGTGCCCAGCACCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCAcggc < 2:563286/226‑1 (MQ=255) aacGGCGCGGGCGGCTGTTCAAGCGGGTCGGGGCCCAGCCCCAGGGGGACCAG‑GTGGGTGGAACCGCGGGAGGGGCACGG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGtt < 1:156138/227‑1 (MQ=255) ggtgtttCATGCTGTTCGGGGCCCAGCCCCACGGGGACCAG‑GGGGGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACCGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATg < 1:459307/223‑1 (MQ=255) ttGTTCAAGCGTTGCGGGGCCCAGCCCCACGGGGACCAG‑GGGCGGGGAAACGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACGGGCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGAc < 1:602303/227‑1 (MQ=255) tggtccacgCTGTTCGGGGCCCGGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCAGTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGAc < 1:553702/220‑1 (MQ=255) ggtggtCGGTGCCCACCCCCCCGGGGAACGG‑GTGGGTGGAACCGCAGGAGGGGCACTG‑GGGCGGCCCCGGTCGCTGACTGTCAC‑AGGGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTAt < 1:24167/223‑1 (MQ=255) agggTTCGGGGCTCGGCCCCACGGGGACGAG‑GGTCGTGGAACCGGAGGAAGGGCGCTG‑GCGCGGCACCGGAGCGTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGGGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTAt < 1:135446/225‑1 (MQ=255) cTGTTCGGTGCCCAGCCCCCAGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTAt < 2:97985/227‑1 (MQ=255) tggtCGGGGGCCAGCCCCACGGAGACCAGCGTG‑GGGGAACCGAAGGAAGGGCAGTG‑GCGCGGCACCGGACGCTGACTGGCAC‑AGTGGGGGCGGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGAGCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCCGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATc < 1:33763/224‑1 (MQ=255) gTTCGGTGCCCAGCCCGCCGGGGCCCAG‑GTGGGGGGAACCGGAGGGAGGGCACTG‑GGGCGGCACCGGACGCTGAATGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATCCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAg < 1:636599/228‑1 (MQ=255) tCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGTGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTACGAAAGGGCATGCACTCGTTTTCAGcc > 2:564409/1‑228 (MQ=255) tCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCACTCAAGCCACAGTCGTGGCACAGCAGTGCAGGCGCCAAGCCACGGCGGTTcagtaaaggaagagcccggtagtcagcc > 2:640012/1‑206 (MQ=255) tCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTCAAGAAagaggcaaaacagggtattcacc > 1:539842/1‑209 (MQ=255) gggCCCAGCCCCACGGGGCCCAG‑GGGGGTGGGACCGGAGGAAGGGCACTG‑GGGGGGGACCGGAAGCTGACTGGCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGGAGGGATCGCAAAGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGt < 1:387554/226‑1 (MQ=255) aGCCCCACGGGCACCAG‑GTTCGGGGAACCGCAGGAAGGGCCCGT‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGc < 2:209114/228‑1 (MQ=255) cccACGGGGACCAG‑GGGCGTGGAACCGGAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTg < 2:66217/227‑1 (MQ=255) cccGGGGACCAG‑GGGCGTGGAACCGCAGGACGGGCACTG‑GCGCGGCCCCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGgcg < 1:466530/226‑1 (MQ=255) aCCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTTAGAAAAGGAATAACCCGGTTATCCGCCTTTaaaacgcgggccctacg > 2:330108/1‑213 (MQ=255) cAG‑GGGCGTGGAACGGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGa < 2:13106/226‑1 (MQ=255) gtgggtggAACCGCGGGAGGGGCACTG‑GCGGGGCACCGGACGCTGACTGTCAC‑AGGGGTGGCAGCGCAGAGGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGAt < 1:469469/228‑1 (MQ=255) | GTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGTACCAATCAAAATCCGCGCGCCG‑CCGCGATGTACTTCTGCCA‑GTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAG‑GTGCGTGGAACCGCAGGAAGGGCACTG‑GCGCGGCACCGGACGCTGACTGTCAC‑AGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGAT > NC_000913/4125141‑4125588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |