Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,300,862 | T→C | 15.6% | E138G (GAG→GGG) | yhbT ← | SCP‑2 sterol transfer family protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,300,862 | 0 | T | C | 15.6% | 176.3 / 3.0 | 79 | E138G (GAG→GGG) | yhbT | SCP‑2 sterol transfer family protein |
Reads supporting (aligned to +/- strand): ref base T (47/17); new base C (3/11); total (50/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.49e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCCCAGCGTCAGAAAGCCATCTTCACGCAGATCGTGAACCAGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACGCACATGAA > NC_000913/3300628‑3301096 | ccccAGCGTCAGAAAGCCATCTTCACGCAGATCGTGAACCAGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAg > 1:543792/1‑239 (MQ=255) ccctctttCCCGCAGTCCGTGACCCACCTTCCCTCCCGCTTCCGTTACGAAGGGGCGACGAAGCGGGGCAAGAATACCCGTCGCATC‑ATGGGAATTTTCTCCTGGATTTAGCAGGTTTCACCTACCGATG‑GTGTTTTGTTTGCAGGCGCGGTTTTC‑T‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCAt < 2:915434/233‑1 (MQ=255) tCTTCACGCAGATCGTGAACCAGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑AAGGCGCGGTTTTC‑A‑TTCCCGCCTCACCAAAATCCGCCAGTTGGAGGACCATCTTCCGTAAAGCTTTCGGAATTTGCCCCCGGTCAATgggcgaccacagg > 2:808317/1‑228 (MQ=255) tCACGCAGATCGTGAACCAGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCACCATCATGCGTAAGGCTTTCGCCATTTGTCCCAGTTCAATGGCGTCCATCAGGttt > 1:161686/1‑239 (MQ=255) aTCGTGAACCAGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACAt > 1:684049/1‑238 (MQ=255) tCGTGAACCAGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGGTTTTCACATAc > 1:363070/1‑239 (MQ=255) aGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCCACAAAATCCGCCCGTTGCAGCAGCATCCTTCGTACGGCTTTCGGCATTTGCTCCAGTTCCATTGGGTCCATCCGGTTTTTCCACTACAGccccca > 2:857284/1‑236 (MQ=255) aGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCCTTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGcccccg > 1:856666/1‑236 (MQ=255) aGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATCGGTAAGGCTTTTGGCATTTCCTCCAGTTCAATGGCGTCCACCGGGTTTTTCACATAAAGCCCCac > 2:650746/1‑237 (MQ=255) cttcgcttcCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACCAAATCCGCCAGTTGCAACAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATAGGGTCCCTCAGGTTTTCcaaaaaacacccccggc > 2:351636/1‑223 (MQ=255) cttcgcttcCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATCAAGCCCCAGCt > 1:731194/1‑238 (MQ=255) cttcgcttcCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTACCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATTCGTAAGGCTTTCGGCATTTGCTCCAGTTCACTGGCGTCCATACGGATTTTCACATACAGCCCCAGCt > 1:729562/1‑238 (MQ=255) tCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCCCATACAGCCCCAGCTCCGGATCGCCTTCaa > 1:614018/1‑234 (MQ=255) aTGGGCGAGGCAGCAGGGCATCAATCCCCGGCGCATCAATGGGAT‑TTTCTACCCAAATTAGCATGGTTCCCCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGcc < 1:77496/239‑1 (MQ=255) aGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGAGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGa > 1:734278/1‑238 (MQ=255) gCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCACCTCCGTATCGCCTTCaacaccccgccaac > 1:126567/1‑226 (MQ=255) cAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCCGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACTTACAGCCCCCGCTCCGTATCGCCTTCAATAACCCGCCGCCGCTGGAAAAAAAGCATa > 2:207820/1‑238 (MQ=255) cAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCgaa > 1:454600/1‑236 (MQ=255) cAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGGTTTTCACATACAGCCCCAGCTCCGGATCGCCTTCAATCACCAGCCGACGCTGGAAGGAGAGCGTa > 1:782529/1‑238 (MQ=255) cAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGCTTTT‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCATTTCAATGGCGTCCATCAGGTTTTTCACATACATCCCCACCTCCGTATCTCCTTCAATCACCACCCGACCCTGGAAGCAAAGCGTa > 1:132241/1‑238 (MQ=255) aTACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTACGGCTTTCGGCATTTGGTCCAGTTCAATGGCGTCCATCAGGTTTTTCCCATCAAGCCCCCGCTCCGTATCGCCTTCAATCCCCAGCCGACCCTGCAAGACAAGCGTATcc > 1:559647/1‑239 (MQ=255) aTACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATcc > 1:885922/1‑239 (MQ=255) cccGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAACCACCAGCCGCCCCTGGAAGAAGAGCGGATCCg > 2:784622/1‑237 (MQ=255) cccGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATACGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGa > 1:687750/1‑239 (MQ=255) atcccATCAATGTGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCCTCCGTAAGGCTTTCGCCATTTGCTCCAGTTCAATGGCAGCCATCAGGTTTTTCCAATACAGCCCCAGCTCCCGATCGCCTTCAATCCCCCACCGACACCGGAAAAAGAGCGTATCCGGa > 2:766419/5‑236 (MQ=255) cgcATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCCGCTCCGTCTCGCCTTCAATCACCAGCCGACGCTGGAAGAAAAGGGAATCCGGAACTTg > 2:57814/1‑239 (MQ=255) cgcATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGGCCATCAGGTTTTTCCCATACAGCCCCAGCTCCGTATCCCCTTCAATCCCCCGCCGCCCCTGacagaaaaccggaccgggaccttt > 2:214275/1‑221 (MQ=255) cgcATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGCCATTTGCCCCCGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCACCTCCCTATCGCCTTCAATCCCCAGCCGACCCTGGAAGACGAGCGAAGCCGCACCttt > 2:441566/1‑238 (MQ=255) aTCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGttt > 1:168940/1‑239 (MQ=255) aaTGTGAT‑TTTCCACTCGAATTTCAATGTTTCCCCTTACG‑TGTGTTGTTGGTTT‑CAGGGCGGGTTTGC‑ACTCCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTAcg < 2:731194/239‑1 (MQ=255) attttCTACCCGAATCGGCTGGTTTCCCCTACGTATTGTTGTTGGGTTT‑CAGGGGGGTTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGcgccg < 1:857284/236‑1 (MQ=255) aTTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGACCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCACCCGCCCCTGGAAGACGAGGGTATCCGGATCTTTGTTAAGCGCCGCAataaccaagaaa > 2:53743/1‑229 (MQ=255) ttCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCCTcag > 1:100075/1‑225 (MQ=255) ttCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTggga > 1:541738/1‑236 (MQ=255) ttCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCACCTCCGTATCCCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGCATCTTGTTTACGCCCCCCAATCATCCCAAGATCCCTGGCgc > 2:141305/1‑238 (MQ=255) ttCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGGTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCCCCAGCCGACGCTGGAAAAATACCGAATCCGGACCTTGTTTACCCCCCCCAATCATAAGCAAAACGCTGGCg > 2:634111/1‑238 (MQ=255) cTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCCCTGGCGTCg‑gac > 1:325249/1‑237 (MQ=255) ccGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTCTCGCCTTCAATCACCACCCGACGCTGGACGAAGACCGTATCCGGTTCTTGTTTACCGACCGCAACTATCAGCAGATCACCGGCGTCT‑GCCCTa > 1:877307/1‑239 (MQ=255) gATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTaaa > 1:38378/1‑239 (MQ=255) gATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTaaa > 1:312186/1‑239 (MQ=255) ttttgttttgttt‑CAGGGGTGTTTTTCTC‑CCCCCGCCTCAAAAAAATCCGCCAGTTGCAGCAGCTCCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATCCAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAAc < 2:168940/236‑1 (MQ=255) cTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTTGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAGGAAGAGCGTATCCGGACCTTGTTTACGCCCCGCAATCATCAGCAGATCGCCGGCGTCG‑GCACAAAAACCca > 2:268215/1‑239 (MQ=255) tttGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGCCGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCCTCG‑CCACTAAAAACCACAt > 2:218490/1‑239 (MQ=255) ttccccGCCTCAACAAAATCCGCCAGTTGCAGCAGCCTCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAAc < 2:684049/236‑1 (MQ=255) cGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGCCCa > 1:496601/1‑239 (MQ=255) cGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGCCTAACGACCa > 1:690759/1‑239 (MQ=255) caacaaAATCCCCCAGGTCCACCAGCATCAAGCTTAATGCTTTCGGCATTTCCCCCAGTTCAATGGCGTCCATCGGGTTTTTCACATACAGCCCCAGCGCCGTATCGCCTTCAATCCCCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTg < 2:194734/239‑1 (MQ=255) aacaaAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGTTTTTTCACATACAGCCCCAGCTCCGTCTCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGAATCCGCATCTTGTTACCCAGCCGCAATCAACAGCCGATCGCTGCCGTCGCGCA‑TAAAACCGCCATCAGCTTTGCCGTTTTGACTACCGACCAgagtgc > 2:145784/1‑234 (MQ=255) aaaCCCCCCAGTTGCAGCCGCCTTATGGGTAAGGTTTTCGGCATTTGCCCCAGTTCAATGGCGTCCATCAGGTTTTCCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCAtt < 2:431678/239‑1 (MQ=255) gctctgtgcacccggctcatGCGTTAGGCTTTCGGGCTTTGCCCCAGTTCAATGGCGTCCATAAGGTTTTTCACATACAGCCCCAGCCCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTcaccac < 2:38378/223‑1 (MQ=255) gCCCGTTTCCGCAGCCTCAGTCTTAAGGCTTTCGGCCTTTGCCCCAGTTCCATGGCGTCCTTCAGGTTTTTCCCATACAGCCCCAGCTCCGGATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTcaccac < 2:782529/239‑1 (MQ=255) gCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCTTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACTCCCCGCAATCATCAGCAGATCGCTGGCCTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTTCGGCTAACACCCAGTTTGCCATTcacac > 1:840067/1‑236 (MQ=255) gCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTcaccac < 1:214275/239‑1 (MQ=255) cccggttgcggcgtgatcttGGGTTAGGTTTTCGCGATTTGCCCCCGTTCAAGGGGGTCCATCAGGTTTTTCACATACAGCCCCAGCTCGGTAGCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTcaccac < 2:391077/224‑1 (MQ=255) cccAGTTGCCGACGCATCTTGTGTAAGGTTTCCGGCATTTTCTTCATTTTCATGGCGTCCAGCCGGTTTTGCACATACAGCCCCAGCTCCGGATCGCCTTCAATCGCCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGGCCAGTTTGCCATGcaccac < 2:411781/238‑1 (MQ=255) ttggcactcctttctgtgTAAGGTTTTCTGCATTTGCTCCTGTTCAACGGGGTCCATCCGGTTTTTCCCATACAGCCCCAGCGCCGTTTCGCCTTCAATCCCCAGCCGACGCTGGAAGAAGGGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAgg < 2:885922/222‑1 (MQ=255) ttGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGACGATCGCTGGCGCCG‑GCACTAAAACTCACATCAGCTTCCCCGTTTTGGCTAAGGACCAGTTTGCCATTAACAACCCAgg > 2:642391/1‑239 (MQ=255) tGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAgg < 1:141305/238‑1 (MQ=255) gcaTCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCAt < 1:881936/239‑1 (MQ=255) catcatGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTcaccac < 1:801805/225‑1 (MQ=255) catcatGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTcac < 1:348971/222‑1 (MQ=255) ttcttGCTTAAGGCTTTCGGCTTTTGGCCCATTTCAATGGCTTCCATCAGGTTTTTCACATGCAGCCCCAGTCCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTg < 2:541738/235‑1 (MQ=255) ctcatGTGTGAGGTTTTCTGCTTTTGTCCCATTTCAAATGCGTCCATCCGTTTTTTCACATTCAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCATTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTg < 2:363070/238‑1 (MQ=255) tcagGCGGAAGGCTTTCGGCATTTGCCCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTg < 1:784622/238‑1 (MQ=255) cctgagggCTTTCGCCCTTTCCCCCACTTCAGTGGCGTCAATAAGTTTTTTCACATGCAGCCCCAGCCCCGTACCCCCTTAAATCCCCATCCGCGGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGt < 2:914301/233‑1 (MQ=255) cGTTAGGCTTTCGGCTTTTGCCCCCGTTCAATGGCGTCCATCAGGTTTTTCACATACCGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGt < 2:423823/238‑1 (MQ=255) tAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGAAAACCATTGAAGGCCaa > 1:848717/1‑239 (MQ=255) aaGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTTCGCGTTCTGGCTAACGACCAGTTTGCCATTAcccacccgggaaactgtctcttttaacaa > 2:348971/1‑216 (MQ=255) ttttGGCATTTGCTCCAGTTCAATGGCCTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCa < 1:268215/238‑1 (MQ=255) ttCGGGCTTTTCTCCAGTTGAATGGCTTCCATCAGGTTTTTCACATGCAGCCCCAGCTCCGTTTCGCCTTCAATCCCCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACg < 2:496601/239‑1 (MQ=255) ttCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACg < 1:665758/239‑1 (MQ=255) ttCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCACCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGCAAACCATTGCAGGGCaaaaacaac > 2:469354/1‑232 (MQ=255) ttCGGCATTTGCTCCAGTTCAATGGCGGCCATCAGGTTTTGCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGCCGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACg < 1:351636/239‑1 (MQ=255) ttCGGCATTTGCCCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACg < 1:650746/239‑1 (MQ=255) tCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCCCTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGCCCAGTTTGCCATTCACCACCGCGGGAACCAATGTCAGGCCAACATccccc > 2:143775/1‑235 (MQ=255) tCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACg > 1:423823/1‑238 (MQ=255) tCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTACAGGTCAAAACCACGc > 2:665758/1‑239 (MQ=255) aTTTGCGCCAGTTCAATGGCCTCCATCAGGTTTGTCACATACAGCCCCAGTTCCGTATCGCCTTCAATCCCCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACGCACATg < 1:886492/239‑1 (MQ=255) ttGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCCCTAAAACTCACATCAGCATTCGCGTTCTGGCTAACGACCCGTTTGCCATTCACCACCCAGGTAAACCATTGCAGGGCACAAACACGCAAATGaa > 2:484265/1‑239 (MQ=255) | CCCCAGCGTCAGAAAGCCATCTTCACGCAGATCGTGAACCAGCTTCGCTTCCGCATCACTTTCGAATGAGCGACGCAGCAGGGCATCAATACCCGGCGCATCAATGGGAA‑TTTCTACTCGAATTAGCATGGTTCACCTACCGATGTCTGTTTGGTTT‑CAGGCGCGGTTTTC‑A‑TTCCCGCCTCAACAAAATCCGCCAGTTGCAGCAGCATCATGCGTAAGGCTTTCGGCATTTGCTCCAGTTCAATGGCGTCCATCAGGTTTTTCACATACAGCCCCAGCTCCGTATCGCCTTCAATCACCAGCCGACGCTGGAAGAAGAGCGTATCCGGATCTTGTTTACGCGCCGCAATCATCAGCAGATCGCTGGCGTCG‑GCACTAAAACTCACATCAGCTTGCGCGTTCTGGCTAACGACCAGTTTGCCATTCACCACCGAGGTAAACCATTGCAGGTCAATATCACGCACATGAA > NC_000913/3300628‑3301096 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |