| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,749,428 | T→G | 18.8% | G66G (GGT→GGG) | sgbU → | putative L‑xylulose 5‑phosphate 3‑epimerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,749,428 | 0 | T | G | 18.8% | 145.1 / 5.4 | 77 | G66G (GGT→GGG) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase |
| Reads supporting (aligned to +/- strand): ref base T (22/37); new base G (16/2); total (38/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.20e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCA > NC_000913/3749202‑3749665 | gcAAATCGGCGCTATCGGGGGAGGTTCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATccc < 1:363379/238‑1 (MQ=255) gggggAGGTGCGCGTGCGTAATTATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGGTCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCg < 1:378543/238‑1 (MQ=255) gTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCCCAtc > 1:186938/1‑238 (MQ=255) tGCGCGTTGGTAATCATCAGTTAGGGATTTATGAAAACGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTTGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACAtcg < 1:853507/238‑1 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCCCGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGCCGATGTGCCTGTCCCcacgccaa > 1:137815/1‑234 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCCCAAAGGACTTCGCTGGTTGCCCCGGTGATCGAACCAGGTGTTGGGATCCCGTCGATGGGCCTGTCCGCACAtcg > 1:57153/1‑238 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGGTCGAAACAGGGGTTGGGATCCCGCCGAGGTGCCGTTCCGCCCAtcg > 1:355308/1‑238 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTggg > 1:89914/1‑209 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGCGGCTGTGCCCGTcccccaaccg > 1:253914/1‑230 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGAGCCCGGCGATGGGCCTGTCCGCACAtcg > 1:299401/1‑238 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCCCTCACGTCTTGACTGGGAGGCCGCACAAAGGCCTTCGCTGGTGGCCGCGAGGATCGAAAACGGGGTTGGGATCCCGGCGGTGGGCCttgcccgccaacg > 2:569770/1‑226 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACAGCTCTCCAGCCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGGTGCCCCGGAGTGCGAACAAGGGGTTGGGGTCCCGGCGATGTGGCCTTCCGccaaccgt > 2:568834/1‑232 (MQ=255) tGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAAACGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGGCGGTGTGCCTGTCCGCACAtcg > 1:901125/1‑238 (MQ=255) cgcgTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGGTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAAGGCCGCACACAGGACTTCCCCGGGTGCCCCGGTAGTGGGAACAGGGGGTGGGCACCCGGACATGTGccggcccccccaaggggg > 2:486348/1‑223 (MQ=255) cgtgcgtAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGGTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCACTCACGTCTTGACTGGAGGGCGGCCCAAAGGACTTCGCTGGTTGCCGCGGTTATCCGAACCGTGGTTGGGATCCCCTCGCTTGGCCTTCCCGCACCtcacccct > 2:489097/1‑233 (MQ=255) tAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGGGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCCCAAAGGACTTCGCTGGTTGCCGCGATGTTCGAAACAGGGGTTGGGAGCCCGTCGATGTGCCTGTCCACAAAtgggccggttc > 2:122901/1‑226 (MQ=255) cgTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGAGGTTTTGATTTTGTCGAACTGTCGGTGGTTGCAACCGACGACCGGGTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCCGGCTGCCGCGAGGATCTCAACATGTGTTGGGCACCCGTCGCTTGGCCTGTACCCACATCACCGCTTTACCCTTGGTAGc > 2:170524/2‑239 (MQ=255) aGTTAGGGATTTATGAAAAAGCGGTTGGGAAAGGTCCCCTCTGGGCGGAGCGGCTGGGGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGc < 2:587987/239‑1 (MQ=255) aGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCAACAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGAACCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCggg > 1:193882/1‑237 (MQ=255) ggATTTATGAAAAAGCGGTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTGGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGAc < 1:528377/239‑1 (MQ=255) gATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCCCTCACGGCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAAAAGGGGGTGGGCTCCCCTCCAGTTGCCTGTCCGCACACCCTCCCTTTCCCTTTGGGAGCCGGGACg > 2:181423/1‑239 (MQ=255) ttttGTGAAAAAGGCTTGGGGGAAGTTCTCTCCTGGGGGGGGCGGGGGGGGGGGGCAAAAAGCTGCGGTTTGGGTTTTGTCGGAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGCCTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACg < 2:253914/237‑1 (MQ=255) ttATGAAAAAGCGCTGGCGAAAGATCTCCCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAgg < 1:569770/239‑1 (MQ=255) aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACCTCGTCGCTTTCCCTTTGGTAGCCGGGACGAGGcc > 1:726924/1‑238 (MQ=255) aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGGTCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCa > 1:87756/1‑239 (MQ=255) aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGCCGAgccc > 1:378632/1‑236 (MQ=255) aTGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCCCTCACGTCTTGACTGGAGCGCCGCACAAAGACCTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGTGGGGCCCTTCCCCCCACCGCCCCTTTCCCTTTGGGAGCGGGGACggggag > 2:883132/1‑237 (MQ=255) tgttGGGGAAAGTTCCCTCGTGGCCGGGGGGGTTGGTGCTGGCAAAAAGGTGGGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTGTCACGTTTTGACGGGAGCGCCGCACAAAGGCATTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGaa < 2:57153/236‑1 (MQ=255) gAAAGGTCTCTCCTGGCCGGAGCGGGTGGTGCTGGCAAAAAGCTGGGGGTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGgcg < 1:849447/238‑1 (MQ=255) aGATCTCTCCTGGCCGGGGCGGCTGTGGCTTGCAAAAAGCTGCGGTTTTGATTGTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCggg < 1:83520/239‑1 (MQ=255) gacccctcCTGGGCGGGGGGGCTGGTGGTGGCAAAAAGCGGGGGTTTTGATTTTGGTGAAATGGCGGTGGATGAAACCGACGAACGGCTCCCACGTCTTGACGGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCggg < 2:402175/233‑1 (MQ=255) tctcCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGGGGCAGGGGGCGAACGGGCACGGGAAATc > 1:308895/1‑239 (MQ=255) tctcCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATc < 1:719801/239‑1 (MQ=255) ggCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGGAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGGAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATAGTCGCTTTTCCTTTGGTAGCCGTGACGAGGCAGTGGGCGAACGGGGGCGGGGAATCaggggg > 2:352713/1‑234 (MQ=255) gCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGGCGCGATGATCGGAACCGGTGTTGGGCACCCGGCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGTCGAGGCCGTGCGCGAACGGGCGCGGGaacacaagagga > 2:168921/1‑229 (MQ=255) gCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCCCGGGAAATCATGGGTa > 1:718103/1‑239 (MQ=255) gggggCGGTTGGTGCTGGCAAAAAGGTGCGGTTTTGATTTTGTCGAAATGGCGGTGGATGAAACCGGCGGACGGCTCGCACGTCTTGACTGGAGAGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTaa < 2:299401/234‑1 (MQ=255) aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCCCGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGGGTTGGGa > 2:859919/1‑144 (MQ=255) aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGa < 1:859919/144‑1 (MQ=255) aGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGGGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGtctgtct > 1:402175/1‑233 (MQ=255) aGCGGCTGGTGCTCGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGGTGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCCAGGATCGGAAAGGGTGTTGGGATCCCGTCGATGTGGCTGTCCGCACACCGGCGCTTTCCCTTTGGTAGCCGTGACCGTGCCGTGCGGGAACGGGGGCGGGGAATGATGAGTAAACCg > 2:229029/1‑239 (MQ=255) cGGCTGGGGCGGGCAAAATGGTGCGGTTTTGATTGTGGCGAAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTGCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGa < 1:170524/238‑1 (MQ=255) ggggCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGc < 1:28306/235‑1 (MQ=255) gCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGGGAACGGGCGCGGGAAATCATGGGAAAAACGAATCGCCggggggg > 2:774553/1‑235 (MQ=255) gaaaaaggcccGGTTTTGATTTTTGCGAAAGTGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGCGCGCCGCTCAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGgcgcg < 1:910185/228‑1 (MQ=255) cAAAAAGCGGTGGTTTTGATTTTTACGAAATGGCGGTGGAGGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGGCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGgcgcg < 2:486292/238‑1 (MQ=255) aaaaaaGGTGCGGTTTGGGTTTTGGCGAAATGGCGGGGGATGGAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGgcgcg < 1:489097/237‑1 (MQ=255) tgggCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGTCGAACGGCTCTCACGTCTTGACTGGGGCGCCGCCCAAAGGCCTTCGCTGGTTGCCGCGATGATCGAAACAGGTTTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGAtctc < 2:726924/236‑1 (MQ=255) gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGcc < 1:15778/135‑1 (MQ=255) gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGcc > 2:15778/1‑135 (MQ=255) gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGCCGGGGCAGTGGCCGACCGGGCCGGGGAAACCATGAGAAAACGGATTCGCCTGGCGCGCGATCACGGc > 2:227190/1‑239 (MQ=255) gCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGGGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCgg > 1:486292/1‑238 (MQ=255) tttttttttGGCGAAATGGCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGGGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGGTCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCg < 2:87756/234‑1 (MQ=255) gTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGTGGCAGTGCGCGACCGGGCCCGGGCAATCATGAGTAAAGGGATTCGCCTGGGGGGCGATCTCGGCATTCGCaccaacca > 2:670555/1‑239 (MQ=255) ttGTCGGGGGTTGAAACCGACGAACGGGTCTCACGGTTTGACTGGAGGGCCGCAAAAAGGACTTCGCTGGTTTCCGCGATGATCGAAACAGGGGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGc < 2:327434/238‑1 (MQ=255) attggggTGGATGAAACCGTCGACAGGCCCTCACGTGTGTGCGGGAGGGCCGCCCAAAGGACTTCGCTGGTGGCCGCGATGATCGAAAGAGGTGTTGGGATCGCGTCGATGTGCCTGCCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGc < 2:736482/234‑1 (MQ=255) gTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTGGACTGGAGCGCCGCACAAAGGCCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAg < 1:227190/239‑1 (MQ=255) gATGAAACCGACGAACGGCTCTCACGGCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATg < 1:774553/238‑1 (MQ=255) tGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGAc < 1:670555/238‑1 (MQ=255) ccGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGGGCGGGAAATCATGAGGAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGAAGGTTATGACGTCTAt > 1:386847/1‑239 (MQ=255) acgaACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCAACCTGGCAGGGTAGGACGTCTATTAc > 1:685153/1‑239 (MQ=255) ggttttccggTCTTGTCTGGAGGGCCGCGCAAAGGTCTTCGCGGGGTGCCCCGATGATCGAAACAGGTTTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGGGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑c < 2:308895/230‑1 (MQ=255) ggCTCTCGCGTCTTGACTGGGGCGGCGCCCAAAGGACTTCGCTGGTTTCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGGGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑c < 2:186938/239‑1 (MQ=255) ttGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGc > 1:158531/1‑239 (MQ=255) gagtgccggcaaaaGGGCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGGTCCTGGCCGCACATCGGCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCgg < 1:34805/227‑1 (MQ=255) gcgcCGGAAAAAGGGCTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGGCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCa < 1:181423/238‑1 (MQ=255) cgccaaagggtctttgttGGTTGCCGGGATGATCGAAACAGGGGTGGGGATCCCGTCGAGTGGCCTGGCCGCACATCGTCGCTTTCCCTTTGGTAGCCGGGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGtt < 2:378632/222‑1 (MQ=255) cgcACAAGGGGCTTCGCTGGTTGCCGCGATGAACGAAATCGGTGTTGGGATCCCGTCGATGGGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGtt < 1:131940/239‑1 (MQ=255) cgcACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGGAGA‑CCACGACGAAGGCACCCGGCAACGtt > 1:368654/1‑239 (MQ=255) cgcACAAAGGACGTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGGCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGtt < 1:112615/239‑1 (MQ=255) aGGACTTCGCTGGTTGCCGCGATGATCGAAACGGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGa < 1:645939/239‑1 (MQ=255) cTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAgg < 1:650394/238‑1 (MQ=255) cgctgtattccGCGATGATCGAAGCAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAATTCATGAGTAAAGCGATTCGCCTGGCGCGCATTCTCGGCATTAGCACCATCCAGCTGTCAGGTTATTGCTCCTATTACGAAAACCCACG‑CGAAGGAACCCGGGAAACTTTTGCTCAAAGGGTg > 2:523068/10‑239 (MQ=255) gTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTg > 1:258142/1‑239 (MQ=255) tGCCGGGATGAGAGAAACAGGTGTTGGGATCCCGTCGCTGGGCCTGTCCGCACATCGTGGCTTGCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTggg < 1:900835/239‑1 (MQ=255) tgatCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGGCCGCACAGCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGa < 1:673991/238‑1 (MQ=255) gAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAggc < 1:255370/239‑1 (MQ=255) gttgtTGGGTTCCCGGTGTTGGGCCTGTCCCGACATCGGCGCTTTCCCTTTGGGAGCCGTGACGGGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAggcggcggc < 2:158531/237‑1 (MQ=255) gtgtTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCCAGGGCATGCGAAAAggaggcggaa > 2:187515/1‑237 (MQ=255) | GCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAGCTGCGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGCTCTCACGTCTTGACTGGAGCGCCGCACAAAGGACTTCGCTGGTTGCCGCGATGATCGAAACAGGTGTTGGGATCCCGTCGATGTGCCTGTCCGCACATCGTCGCTTTCCCTTTGGTAGCCGTGACGAGGCAGTGCGCGAACGGGCGCGGGAAATCATGAGTAAAGCGATTCGCCTGGCGCGCGATCTCGGCATTCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGA‑CCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCA > NC_000913/3749202‑3749665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |