BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	4 (0.050)	112 (1.330)	72/284	0.0	96.5%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
*	?	NC_000913	2101749 =	NA (NA)	112 (1.330)	72/284	0.0	96.5%	intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

Only 100 of 105 total aligned reads displayed.

TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAT  >  NC_000913/2101609‑2101885

ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTaagga                                                                                                                                        >  2:383301/1‑143 (MQ=255)

  cacaTTACATAAAGTACCCTGGAGCGAAGACATGTCCACGAACAAAATCTGAAAAACGTACCAGCATAAATGATCCCGCGCACCCAT‑CAACCACCCT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTaaggaag                                                                                                                                      <  2:705/143‑1 (MQ=255)

  cacaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAACAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTaaggaag                                                                                                                                      <  2:447937/143‑1 (MQ=255)

   acaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTaaggaagg                                                                                                                                     >  2:657066/1‑143 (MQ=255)

   acaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTATATTaaggaagg                                                                                                                                     >  1:769739/1‑143 (MQ=255)

     aGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACATCCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTg                                                                                                                                   <  1:806379/143‑1 (MQ=255)

        aCATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGa                                                                                                                                <  2:439236/143‑1 (MQ=255)

         cataatgcccccTTGATCGAAGCCATTTACACGCACAAAATCTGAACCACGCACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGCATAGATACTTTCTTTAGCAATT‑TTTGTTTTATTAAGGAAGGTGCGaa                                                                                                                               <  2:1383195/133‑1 (MQ=255)

         cATAAAGTAACCTTGATAGAAGCCATTTACACGCACCAAATCTGAAAAACGTACCAGCATCCATGTCCCTGCGGAGC‑AT‑CGTGTTTGTTGAACAGAATAGATGCTTTCTTTCGTCATG‑TTTGTTTTATTAAGGAAGGTGCGaa                                                                                                                               <  1:305953/143‑1 (MQ=255)

          aTAAAGTAACCTTGATCGAAGCCATCTACACGCACAAAATCTGAAAAACGTACCAGCATAACTGACCCTGCGCACCAAT‑CAACACCCGT‑ATCAGAATAGATACTTACTAGCGGCATT‑TTTGTTTTATCAAGGAAGGTGCGCAt                                                                                                                              >  1:116682/1‑143 (MQ=255)

           tAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGATGGTGCTAATa                                                                                                                             >  1:995566/1‑143 (MQ=255)

            aaaGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAGGGAAGGTGCGAATaa                                                                                                                            <  1:99958/143‑1 (MQ=255)

             aaGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAg                                                                                                                           <  2:1274314/143‑1 (MQ=255)

                tAACCGTGATCGAAGGCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                        <  2:1424783/143‑1 (MQ=255)

                 aaCCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCggg                                                                                                                       <  2:1412868/143‑1 (MQ=255)

                    cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGCTACTTTCTTTAGGAATT‑TTTGTTTTATTGAGGAAGGTGGGAATAAGCGGGGaa                                                                                                                    >  1:331665/1‑143 (MQ=255)

                    cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaa                                                                                                                    >  2:707860/1‑143 (MQ=255)

                     ttGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGAACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACAGT‑ATGAGAATAGATACACTCTTGCGGTGTT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                   >  2:1289927/1‑143 (MQ=255)

                      tGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGCATAAGCGGGGaact                                                                                                                  >  1:302353/1‑141 (MQ=255)

                      tGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGCAAGGTCCAAACAAACGTGGacct                                                                                                                  >  1:1012568/1‑140 (MQ=255)

                         tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAACttct                                                                                                               >  1:841531/1‑143 (MQ=255)

                         tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                               >  2:953698/1‑143 (MQ=255)

                          cGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                              <  2:1259891/143‑1 (MQ=255)

                           gAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑GTCAGAATAGATACTTTCTTTAGGACTT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGCGGAAGctcttc                                                                                                             >  2:506411/1‑143 (MQ=255)

                           gAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                                                             >  2:1036617/1‑143 (MQ=255)

                            aaGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CACCAACCGT‑ATCAGAATAGATACTTTCTTTAGGACTC‑TTTGCTCTATCACGGCAGGTGCGAATAAGCGGGGAAATtcttct                                                                                                            >  2:393755/1‑143 (MQ=255)

                              gCCCTTTACTCGTACACAATGTGCAGAAGGTACCAGCATAAATGTTCCTGCGCACCAAT‑CAACAACCGT‑ATAAGAATAGATACTTTCTTTTGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                                                          <  1:691052/143‑1 (MQ=37)

                               ccATTTACACTCACAAAATCTGCAAAACGTACCAGCATAAATGCTCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                         <  1:771251/143‑1 (MQ=255)

                                 aTTTACACGCACAACATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                       <  2:1088239/143‑1 (MQ=255)

                                 aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                       <  2:139391/143‑1 (MQ=255)

                                 aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                       >  1:956828/1‑143 (MQ=255)

                                       acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTcc                                                                                                 >  1:640715/1‑142 (MQ=255)

                                       acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                 <  1:202803/143‑1 (MQ=255)

                                       acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                 >  1:751236/1‑143 (MQ=255)

                                       acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                 <  2:796312/143‑1 (MQ=255)

                                         gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGAG‑ACAAGTGCTACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGATTTATTAAGGTAGGTGCGAATACGCGGGGAAATTTTTCTCGGCTGCCTCAGt                                                                                               >  1:1415232/1‑143 (MQ=255)

                                          cacaAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGACACTCTCTTCCGCAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                                                              <  2:911020/143‑1 (MQ=38)

                                            caAAATCGGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                                                            <  2:403831/143‑1 (MQ=255)

                                             aaaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑AACGAAACGT‑AGCAAAATCGCTACATT‑TGCCGCCATTGGGGGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                                                           >  2:1444648/1‑143 (MQ=12)

                                             aaaaTCTGAAAAACGTACCAGCAGAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                                                           <  2:1116824/143‑1 (MQ=255)

                                              aaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACATCCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                          <  2:247348/143‑1 (MQ=255)

                                                 tCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                       >  2:445349/1‑143 (MQ=255)

                                                   tGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTaatttcattt                                                                                     >  1:388149/1‑143 (MQ=255)

                                                    gAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGTGAATAAGCCGGGAAATTCTTCTCGTCTGACTAAGTcattgcatttg                                                                                    >  1:823232/1‑142 (MQ=255)

                                                    gAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                                                                    <  1:340572/143‑1 (MQ=255)

                                                       aaaCGTACCAGCATAAATGACCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCCGACTCGGTCATTTAATtccttc                                                                                 >  1:25062/1‑143 (MQ=38)

                                                        aaCGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                                                                <  2:1106920/143‑1 (MQ=255)

                                                         aCGTACCAGCATAAATGCGCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTCTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                                                               <  2:720810/143‑1 (MQ=255)

                                                            tACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                                                            <  2:44929/143‑1 (MQ=255)

                                                             aCCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGAGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                                                           >  1:89371/1‑143 (MQ=255)

                                                              ccAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                          >  2:1292570/1‑143 (MQ=255)

                                                               cAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                         <  1:355055/143‑1 (MQ=255)

                                                               cAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTGGTTTTATTAAGGAAGGTGCGAATAAGCGTGGAAATTCTTCTCGGCTGACTCAGTCATTGTATTTCTTCGTGTTTGa                                                                         >  1:181530/1‑143 (MQ=37)

                                                                aGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                                                                        >  2:970489/1‑143 (MQ=255)

                                                                aGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAACTCTTCTCGGCTGACTCAGTCGTTTCATTTCTTCAGGTTTGAg                                                                        >  1:1258067/1‑143 (MQ=255)

                                                                  cATACATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                                                                      <  2:800205/143‑1 (MQ=255)

                                                                    tAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTGCGCCgc                                                                    >  1:983539/1‑142 (MQ=255)

                                                                       aTGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                                                                 >  2:939231/1‑143 (MQ=255)

                                                                        tGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt                                                                <  1:1040757/143‑1 (MQ=255)

                                                                           tCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                             <  2:956828/143‑1 (MQ=255)

                                                                           tCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGAAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGTGCCGATTTTTtc                                                             >  2:305330/1‑143 (MQ=255)

                                                                           ccatGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTCTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                             <  1:571500/140‑1 (MQ=255)

                                                                              tGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATGTTTTCTcc                                                          >  1:324065/1‑143 (MQ=255)

                                                                               gcgcACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                         <  1:383301/143‑1 (MQ=255)

                                                                                  cACCAAT‑CAACAACCGT‑ATCAGAATAGATACGTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTCTCCCGTa                                                      >  1:879914/1‑143 (MQ=255)

                                                                                     cAAT‑CCACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt                                                   <  1:1047220/143‑1 (MQ=255)

                                                                                     cAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTGAAt                                                   >  2:560415/1‑143 (MQ=255)

                                                                                           aacaacCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                              <  2:941177/143‑1 (MQ=255)

                                                                                            acaacCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGTAATTCTTCTCGGCTTCCTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCTCGTACATGCCTTg                                             >  1:501228/1‑143 (MQ=21)

                                                                                            acaacCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg                                             >  2:792961/1‑143 (MQ=255)

                                                                                             caacCGT‑ATCAGAATGGATACTTGCGTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                            <  1:939231/143‑1 (MQ=255)

                                                                                             caacCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAACTTCTTCTCGGCTGACTCAGTCATTTCATTTCTACATGTTTTTGCCGATTTTTTATTCCGTGACTGCTTTGa                                            >  1:521856/1‑143 (MQ=21)

                                                                                             caacCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                            <  1:736201/143‑1 (MQ=255)

                                                                                              gacCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                           <  2:1224771/142‑1 (MQ=255)

                                                                                              aacCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                           <  1:657066/143‑1 (MQ=255)

                                                                                                 cGT‑ATCAGAATAGCTACTGTCTTCAGGGATT‑TTTGTTGTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACACATTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                        <  2:192953/143‑1 (MQ=17)

                                                                                                 cGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                        <  2:541059/143‑1 (MQ=255)

                                                                                                 cGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTATCCCGTACATGACTTGAATCa                                        >  1:734311/1‑143 (MQ=255)

                                                                                                 cGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                        <  1:578065/143‑1 (MQ=255)

                                                                                                 cGT‑ATCAGAATAGACACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                        <  1:558238/143‑1 (MQ=255)

                                                                                                   t‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                      <  2:1185938/143‑1 (MQ=255)

                                                                                                        aGAATAGATACTTTCTTTAGGAATT‑TTTGTGTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGGCTAt                                  >  2:369188/1‑143 (MQ=255)

                                                                                                         gAATAGTGACTGTCTTTAGGAATT‑GTTGTTTTATTAAGGAGGGTGCGAATTAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTTATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                                 <  1:391092/143‑1 (MQ=17)

                                                                                                         gAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                                 >  2:828029/1‑143 (MQ=255)

                                                                                                           aTAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                               <  1:953698/143‑1 (MQ=255)

                                                                                                             aGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                             >  2:1205871/1‑143 (MQ=255)

                                                                                                              gATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAACTGCCTTGAATCAGCCTATTTAGAc                            >  2:107827/1‑143 (MQ=255)

                                                                                                              gATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc                            >  2:105059/1‑143 (MQ=255)

                                                                                                               aTACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAcc                           >  2:187490/1‑143 (MQ=255)

                                                                                                                 aCTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCATCCTATGTAGACCGt                         >  1:1314355/1‑143 (MQ=255)

                                                                                                                      cttcAGGAATC‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAACGCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                    <  2:27137/143‑1 (MQ=255)

                                                                                                                        ttAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                  >  2:80689/1‑143 (MQ=255)

                                                                                                                        ttAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                  >  2:128233/1‑143 (MQ=255)

                                                                                                                        ttAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCACATCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                  <  1:93216/143‑1 (MQ=255)

                                                                                                                           ggAATT‑TTTGTGTGATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCa               <  2:200476/143‑1 (MQ=255)

                                                                                                                            gAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt              <  2:819035/143‑1 (MQ=255)

                                                                                                                             aaTT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAGCTGACTTAAATCAACCTATTTAGACCGTTTCTTCGCCAtt             <  1:1036617/143‑1 (MQ=14)

                                                                                                                                    tGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc       <  1:949293/143‑1 (MQ=35)

                                                                                                                                       gttattaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATGTAAGGCGtt    <  2:1415232/142‑1 (MQ=17)

                                                                                                                                         tattaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAt  <  2:795233/143‑1 (MQ=32)

TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAT‑CAACAACCGT‑ATCAGAATAGATACTTTCTTTAGGAATT‑TTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAT  >  NC_000913/2101609‑2101885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.