New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 458799	1 (0.020)	43 (0.900)	33/276	0.4	97.8%	intergenic (+99/‑89)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609347	NA (NA)					intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

GAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTA  >  NC_000913/609211‑609487                                                                                                                                         |                                                                                                                                             gAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCAGCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGt                                                                                                                                        >  1:392341/1‑143 (MQ=14)   gCTTACAGGTGGCCATTCGTGGGACAGTATCCCTTACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTaa                                                                                                                                      <  1:849837/143‑1 (MQ=17)        cAGGTGGCCATTCGTGGGACAGTCTCCCTGACAGCCGACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATcccc                                                                                                                                 <  1:664715/143‑1 (MQ=255)         aGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCg                                                                                                                                >  1:523996/1‑143 (MQ=37)         aGGTGGCCATTCGTGGAACAGTATCCCTGACAGCTTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCg                                                                                                                                <  2:3849/143‑1 (MQ=255)          ggTGGGCATTCGTGGGACAGTCTCCCTGACAGCCTACAAAGCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                               <  2:659200/143‑1 (MQ=255)                  ttCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTACGTTAGCGCTTATGGGCGTAATCCCCGCATACCCgg                                                                                                                       >  2:824541/1‑143 (MQ=255)                    cGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGtt                                                                                                                     <  1:543564/143‑1 (MQ=255)                    cGTGGGACAGTATCCCTCACAGCCTACAAAACGCATTTGAAGAACTCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGtt                                                                                                                     <  1:230319/143‑1 (MQ=255)                     gTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCACCGCATATCAGGTTg                                                                                                                    >  2:391658/1‑143 (MQ=255)                          aCAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcagg                                                                                                               >  2:26048/1‑143 (MQ=255)                            actATCCCGGACGGCCTACACAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcaggtc                                                                                                             <  2:677628/141‑1 (MQ=255)                                  ccTGACAGCCTGCAAAACGCAGTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCAGTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATg                                                                                                       <  2:740479/143‑1 (MQ=255)                                    tGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGt                                                                                                     <  1:595933/143‑1 (MQ=255)                                     gACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCTCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTa                                                                                                    >  2:448480/1‑143 (MQ=255)                                      aCAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTaa                                                                                                   <  2:775130/143‑1 (MQ=255)                                        aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAgg                                                                                                 >  1:170627/1‑143 (MQ=255)                                            tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTCGAACTTACGTCACAAATACCCGCACATCCTGTTGTCAGGTCAGGGTGGTCAGGCAcc                                                                                             >  1:623688/1‑143 (MQ=14)                                            tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAcc                                                                                             >  1:219651/1‑143 (MQ=255)                                                  aCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCttt                                                                                       <  1:372710/143‑1 (MQ=255)                                                   cgcattcgcggagcgcgAGCCATCTCCTTAACGAGGCACCGCGGCGTCGCATTCTTCAGATGGTTCAACCCTTAACTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTa                                                                                      <  2:2877/130‑1 (MQ=21)                                                    gCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTac                                                                                     >  1:750291/1‑143 (MQ=255)                                                     cAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTaca                                                                                    <  2:219651/143‑1 (MQ=255)                                                        ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCATATGGTTCAAACCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACtt                                                                                 <  2:138739/143‑1 (MQ=255)                                                                  cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTCGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTCAGGCACCTGCTTTACACTTTCGGCCGTgc                                                                       >  1:541184/1‑142 (MQ=255)                                                                  cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAGTCCCCGCATATCCGGTTGTACGGTCAGGATGGTAAGGCATCTGCGTTAGACTTTcagcagtga                                                                       >  1:101676/1‑135 (MQ=18)                                                                    aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATccc                                                                                                                                  <  1:552127/82‑1 (MQ=40)                                                                    aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATccc                                                                                                                                  >  2:552127/1‑82 (MQ=40)                                                                         tCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGGGGTCAGTGa                                                                >  2:251560/1‑143 (MQ=255)                                                                            tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCACCCATATCCGGTTGTAAGGTCAGGAAGGTAAGGCACCTGCTCTACACTTTCGCCCGTGGTCAGTGATgg                                                             >  2:378432/1‑143 (MQ=25)                                                                               tAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCACTGATGGCTg                                                          >  1:637455/1‑143 (MQ=255)                                                                                  cGAGGCACGGAGTCGTCGCATTCTTCAGATGGTTCAACCCTTTAGTTAGTGCTTATGGGAGTAACCCCCGCATATCCGGTTGTCAGGTCGGGATGGTAAGGCACCTGCTTGACACTTTCGCCCGTTGTCAGTGATGGCTGCgg                                                       <  2:357238/143‑1 (MQ=37)                                                                                  cGAGGCACAGAGACGTCGCATTCTTCATTTTTATCAACCTTTAATTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCgg                                                       <  1:155587/143‑1 (MQ=255)                                                                                      gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTCAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGCTGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCACTGATGCCCGCGGGCgc                                                   >  2:489187/1‑142 (MQ=37)                                                                                      gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTAATGGCTGCGGGCGa                                                   >  2:576614/1‑143 (MQ=255)                                                                                         cgtgggCGTCGGATTCTTCAGAGGTGTCAACCCGTACGTTAGCGCTTATGGGAGTAAGCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTTAGTGATGGCTGCGGGCGAATc                                                <  2:103366/139‑1 (MQ=255)                                                                                            aGGCGTCGCATTCTTCAGATGGTTCAACCCCTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTa                                             <  1:532493/143‑1 (MQ=255)                                                                                             ggCGTCGCATTCTTCAGATCGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTAc                                            <  1:246462/143‑1 (MQ=255)                                                                                                 tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGa                                        >  1:552787/1‑143 (MQ=255)                                                                                                   gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGAAATCCCCGCATATCCGGTTGTCAGGTGAGGATGGTAAGGCACCTGCTTTACACTGTCGCCCGTGGGCAGTGATGGCTGCGGGCGAATCGACCCACAtg                                      >  2:851016/1‑143 (MQ=37)                                                                                                    cATTCTTCAGATGATTCAACCCTTAAGTTAGCGCTTATGGAAGTAATCCCCGCATATCCGGTTATCAGATCAGGAAGATAAAGCACCTACTTTACACTTTCGACCGAGGTCAGAAATAACTGCAAACAAAACGTACCAAAtgt                                     >  2:646027/1‑143 (MQ=19)                                                                                                     aTTCTTCAGATGGTGCACCCATGATGTTAGCGCATCTCATGTTGAGCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAtgtt                                    <  2:602836/143‑1 (MQ=255)                                                                                                      ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAtgttg                                   >  1:605295/1‑143 (MQ=255)                                                                                                          tcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCaa                               <  1:721347/143‑1 (MQ=255)                                                                                                             gATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGAGAGTCGTACCAGATGTTGTCAATTa                            >  1:345576/1‑143 (MQ=255)                                                                                                             gATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGGTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGCGGTCAGGGCTCGCTGCGGGCGAATCCTACCACAGGTTGTCAACTa                            >  2:161719/1‑143 (MQ=38)                                                                                                              aTGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCTCGTGGTCAGTGATGGCTGCGTTCGAATCGTACGAGATGTTGTCAATTaa                           >  1:592285/1‑143 (MQ=255)                                                                                                               tGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTGAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAAt                          <  1:604972/143‑1 (MQ=255)                                                                                                                     aaCCCGTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTCAGGCACCTACTTTACACTTTCGCCCGTGGTCAGTGAGGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGtt                    <  2:211119/143‑1 (MQ=255)                                                                                                                       cccgtgaGTTAGCGCTTATGGGAGTGATGTCTGCCTATCCGGTTCTCAGTTGAGCATGTTAATGCACCTGCTTTACACTTTTGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTgg                  <  2:210420/137‑1 (MQ=255)                                                                                                                       cccTTAAGTTAGCGTTTTTGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTgg                  <  2:638332/143‑1 (MQ=255)                                                                                                                        ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGc                 >  2:399776/1‑143 (MQ=255)                                                                                                                        ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGc                 >  1:234167/1‑143 (MQ=255)                                                                                                                        ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGAGGGCTGAGGGCGAATCGTACCAGATGTTGTCAATGAATCGTGTTGGc                 >  2:543166/1‑143 (MQ=255)                                                                                                                         cTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTAACAGATGTTGTCAATTAATCGTATTGGca                >  2:242069/1‑143 (MQ=255)                                                                                                                                tAGCGCCTATGGTCGTAATCCCCGCACATCCGGTGGTCAGGTCAGGATGGTAAGGCAACTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGtt         <  1:295526/143‑1 (MQ=255)                                                                                                                                    gcTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGCCACCGCGTTAtcg     >  2:336692/1‑141 (MQ=255)                                                                                                                                       tATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTa  >  1:370778/1‑143 (MQ=255)                                                                                                                                         |                                                                                                                                             GAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTA  >  NC_000913/609211‑609487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.