New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3915902	43 (0.870)	3 (0.060)	3/280	7.5	6.2%	coding (70/420 nt)	atpC	F1 sector of membrane‑bound ATP synthase, epsilon subunit
	?	NC_000913	= 3915924	49 (1.010)					coding (48/420 nt)	atpC	F1 sector of membrane‑bound ATP synthase, epsilon subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATC  >  NC_000913/3915786‑3916066                                                                                                                                           |                                                                                                                                               atccgctTCGTGACCGTGCTGTGGTACGACGCGAACCATACCAGGCTTACTCGCTGTGAACAGCGGTGGGGGAACAGGGTAGATCCCCAGTGCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACAttt                                                                                                                                            <  2:464391/138‑1 (MQ=255)       ttCGTGACCGTGCTGTTTCACGATGCGAATCATACCCGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGCCCAAACCAGAGAACCTCTGTTGct                                                                                                                                      >  2:399273/1‑143 (MQ=255)           tGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTgc                                                                                                                                  <  1:806464/143‑1 (MQ=255)            gACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTGGTTGGTCTgcg                                                                                                                                 >  1:282402/1‑143 (MQ=255)              ccGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTTGTCAAGACCAAAAAACATTTGTTGCTATgcgat                                                                                                                               >  1:33476/1‑141 (MQ=255)               cGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGGGAAGATTTGGTGCTATGCGCTg                                                                                                                              >  1:88169/1‑143 (MQ=255)                 tGCTGTTTCACGATGCGAGTCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGAACCCGAGCTCGTCGTCTCGAGCGGTTACCTGGATATTCTCGACGAGACCAGAGAACATTAGTTGCGCTGGGCTgac                                                                                                                            >  1:233136/1‑143 (MQ=255)                    tGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCACCAGTTCACCTTCGCTACCCGTTACCTGCATTTTCTCGCCCAGACCAGATCACATTTGTTGCTCTACGCTgaggcc                                                                                                                         >  2:18572/1‑139 (MQ=255)                      tttCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCCTCGCTACCCGTTACCTGGCTTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGt                                                                                                                       >  1:197240/1‑143 (MQ=255)                          aCGATGCGAATCATACCAGCCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAg                                                                                                                   <  1:530829/143‑1 (MQ=255)                           cGATGCGAATCATACCAGGCTTAATGGCGGTGCGCAGCGGTGCGTGGCCAGGCTAGATCCCCAATTCACCTTCGCTAACCATTACCTAGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAgg                                                                                                                  >  1:723558/1‑143 (MQ=255)                             aTGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGCTCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAggtg                                                                                                                <  1:268699/143‑1 (MQ=255)                             aTGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACTACGTCCAggtg                                                                                                                >  1:100889/1‑143 (MQ=255)                             aTGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAggtg                                                                                                                <  1:753113/143‑1 (MQ=255)                                cGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTa                                                                                                             >  2:366274/1‑143 (MQ=255)                                 gAAGCAGACCAGGCGTAATGGCGGGGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTaa                                                                                                            <  1:289398/143‑1 (MQ=255)                                         ctagggtgaaTGGCGGTGAGGAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGc                                                                                                    <  2:357965/135‑1 (MQ=255)                                            ggCTTAATGTCGGTGAGCAGCGGTGCGTGGCCAGGGTAGCTCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCat                                                                                                 <  1:842067/143‑1 (MQ=255)                                               ttAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATc                                                                                              >  2:262366/1‑143 (MQ=255)                                                     ccgctgcgcttcGGTGCGTGGCCCGGGTACACCCCCAGCTCACCTTCGCTACCCGTTACCTGGCTTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTc                                                                                        <  1:24965/132‑1 (MQ=255)                                                       ggTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCGCTGCGCTGACGACGTCCAGGTGGTACGTCATTGCCATCTCACCCTCCg                                                                                      >  1:40288/1‑143 (MQ=255)                                                              agcGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAATTTCCCGACCAGACCAGAGAACATTTGGTGCTCTGCGCTGACGACGGCCCGGTGGTAAGGCATTGCCATATCACCCTCCGATTaatg                                                                               >  2:45348/1‑141 (MQ=255)                                                               gcGGTGCGTGGCCAGGGTAGATCCCCCGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGc                                                                              <  1:307660/143‑1 (MQ=255)                                                                   tGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCAGCCTGCGATTAAGGCGGTa                                                                          >  1:544351/1‑143 (MQ=255)                                                                    gCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCACGACCAGACCAGAGAACATTCGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAACGCGTTaa                                                                         >  2:26736/1‑143 (MQ=255)                                                                    gCGTGGCCAGGGTAGATCCCCAGCTCACCCTCGCTACCCGCTGCCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTaa                                                                         <  2:351474/143‑1 (MQ=255)                                                                         gCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTGATAGCCATACCACCGTACGACTAAGGCGTTAAAGtgt                                                                    >  2:76812/1‑141 (MQ=255)                                                                             gggTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCATAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATGGCCATATCGCCCTCCGATTAAGGCGTTAACGTTTTTTg                                                                >  1:722079/1‑143 (MQ=255)                                                                              ggTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTgg                                                               >  2:156542/1‑143 (MQ=255)                                                                               gTAGGTCCCCAGTACCCGTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCGGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGc                                                              <  1:24343/143‑1 (MQ=255)                                                                                            tCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTTCACACct                                                 >  1:372028/1‑143 (MQ=255)                                                                                                tctCGCTACCCGTTGCCTTGCTTTCCTCGCCCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTACGGCGTTAAAGTTTTTTGGCTTTTTCCACAGcttctt                                             <  2:753444/141‑1 (MQ=255)                                                                                                cTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAGGGCGTTAAAGTTTTTTGGCTTTTTCCACAGcttctt                                             >  1:521495/1‑143 (MQ=255)                                                                                                 ttCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAGGGCGTTAAAGTTTTTTGGCTTTTTCCCCAGCgtcttc                                            >  1:738770/1‑143 (MQ=255)                                                                                                 ttCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTCTTCCACAGCttcttc                                            <  2:723991/143‑1 (MQ=255)                                                                                                     cTACCCGTTACCTGGATTCTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATg                                        <  1:38039/143‑1 (MQ=255)                                                                                                      tACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATgg                                       >  1:522512/1‑143 (MQ=255)                                                                                                       aCCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTGTTCCACAGCTTGTTCGAtcgc                                      >  1:312038/1‑140 (MQ=255)                                                                                                         ccGTTACCTGGATTTTCTCGCCCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAAc                                    <  1:416352/143‑1 (MQ=255)                                                                                                            ttACCTGGATTGTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGa                                 <  2:770988/143‑1 (MQ=255)                                                                                                              aCCCGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTAAGCCGACGACGGCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGAcc                               <  1:193464/143‑1 (MQ=255)                                                                                                                cTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGAccct                             >  1:380411/1‑141 (MQ=255)                                                                                                                      tttCTCGACCAGACCAGAGAACATTTGTTGCTCTGTTCTGACGACGTCCAGGTGGTAAGTCATTGCCATATAACCCTCCGATTGAGGCGGTAAAGTATTTTGGCTTTTTCCACAGCTTCTTCGTTGGAACCCACCATGTAGaa                       >  2:257325/1‑143 (MQ=255)                                                                                                                        tctcGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCCTCGATGGAACCGACCCTGAAGAAcc                     >  2:583660/1‑142 (MQ=255)                                                                                                                         ctcGACCAGACCAGAGAACATTTGTTGCTCTGGGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCGTGTAGCACGc                    >  2:448315/1‑143 (MQ=255)                                                                                                                                      gagaACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTCTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACAATGTAGAACGCCTGCTCCGTCAgt       >  2:423803/1‑142 (MQ=255)                                                                                                                                        gaACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTg     >  1:614718/1‑143 (MQ=255)                                                                                                                                           cATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGTACCTCCCATTTTGAACGCCTGCTTCGACAgtaaaac  >  1:636560/1‑137 (MQ=255)                                                                                                                                           cATTTGTTACTCTGCGCTGGCGACGCCCAGGTCGTAAGTCATTGTGATATCACCCTCCGATTAAGGCGTTGAAGTCTTTTGGCTTGCTCCACAGCTTCGTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATc  <  2:88169/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                               AAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATC  >  NC_000913/3915786‑3916066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.