New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4185518	49 (0.990)	3 (0.060)	3/274	7.4	6.2%	coding (170/4224 nt)	rpoC	RNA polymerase, beta prime subunit
	?	NC_000913	= 4185542	44 (0.920)					coding (194/4224 nt)	rpoC	RNA polymerase, beta prime subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGTATGGGCCACATCGAACTGGCTTCCCCGACTGCG  >  NC_000913/4185402‑4185684                                                                                                                                             |                                                                                                                                               tGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTaa                                                                                                                                              >  2:37454/1‑143 (MQ=255) ggagATGAAAGTTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTGAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTCTCTGCGCCCGTATCTTTGGGCCGGTaa                                                                                                                                              <  1:797817/140‑1 (MQ=255)   cGACCAATATTGCTCTGGCTTCGCCAGCCATGATCCGTTCATGGTCTTTCGTTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTaaaa                                                                                                                                            <  1:68837/143‑1 (MQ=255)    gATCAAAATTGCTCTGACTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGCCGGCATTTTCTGCGCCAGTATGTTGGGCCCGGTcaaca                                                                                                                                           >  2:389656/1‑141 (MQ=255)        taagttGCTGTGGCTTCGCCAGACAGGGTCCGTTCATGGTCTTGCGGTGAAGGTAACGAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGGGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTa                                                                                                                                       <  2:798883/139‑1 (MQ=255)         aaaTTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTCTCTTCGGGCCGGTAAAAGATTAc                                                                                                                                      >  2:226361/1‑143 (MQ=255)               ctcccgCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGc                                                                                                                                <  1:778244/138‑1 (MQ=255)                tctGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATAAACTACCGTACGTTCAAACCAGAACGTGACGGCCTACACTGCGCCCTTCTCCTTGGGCCGGTAACAGATTAGGAGCGcc                                                                                                                               >  2:459633/1‑143 (MQ=255)                    gCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAACAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGGGCCCGTATCTTTGGGCCGGTGAAAGATTACGAGTGCCtgtg                                                                                                                           >  2:770616/1‑143 (MQ=255)                    gCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTTGACCGGTAAAAGATTACGAGTGCCtgtg                                                                                                                           >  1:733350/1‑143 (MQ=255)                      ttCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGGGCCTGTGCg                                                                                                                         >  1:419415/1‑143 (MQ=255)                          ccAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGATGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTaa                                                                                                                     >  2:421403/1‑143 (MQ=255)                               cATAATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACa                                                                                                                <  1:10044/143‑1 (MQ=255)                                 tGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAg                                                                                                              <  1:725834/143‑1 (MQ=255)                                     cccatCATGGGCTTTGGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGTCGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGcc                                                                                                          <  2:552092/139‑1 (MQ=255)                                     ccGTTCATGGTCGTTCGGTGAAGTTAAAGAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGcc                                                                                                          <  2:196883/143‑1 (MQ=255)                                     ccGTTCATCGCCTTTCGCTGAACTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGGGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGcc                                                                                                          <  2:196885/143‑1 (MQ=255)                                          cATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCGGTGCGCTCAGTACAAGCGCCTGaaa                                                                                                     >  2:250498/1‑143 (MQ=255)                                            tGGTCTTTCGGTGAAGTTAGAAAGCCGGAAACCAGCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAaca                                                                                                   <  2:753565/143‑1 (MQ=255)                                            tGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGCACGTGACGGCCTTTTCTGCGCCCTTATCTTTGGGCCGGTAACACGCTACGAGAGCCTGTTAGGTAAGTACAAGCGGCTGAAaca                                                                                                   >  2:95891/1‑143 (MQ=255)                                            tGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGAGGCTGAAaca                                                                                                   >  1:211339/1‑143 (MQ=255)                                              gtgtggtggTGAAGTTAAAGAGCCGGAAACCTTCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCTGTAAGTACAAGCGCCTGAAACAcc                                                                                                 <  2:620865/136‑1 (MQ=255)                                               tCTTTCGGTGAGGCGCAAGAGCCGGAGACCATCGACTACCGTACGTTCAATCGAGAACGTGACGGCCTTTTCTGCGCGCGTATCTGTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCg                                                                                                <  2:588152/143‑1 (MQ=255)                                                    cGGTGAAGTAAAAAAGCCGGAATCCATCAACTACCGTACGGTCAAAGCAGAACGGGACGGCCTTGTCTGCGCCCGTATCTGTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCg                                                                                           <  2:115890/143‑1 (MQ=255)                                                     ggTGAAGTTAAAAAGCCGCAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGt                                                                                          <  1:125281/143‑1 (MQ=255)                                                         aactcacaacgCCGGACACCATCAACTACCGTACGTTCAAACCAGAACGGGACGGCCTTATCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATc                                                                                      <  1:765018/133‑1 (MQ=255)                                                             tAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCtgtg                                                                                  >  1:653409/1‑143 (MQ=255)                                                              aaaaaGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTga                                                                                 <  1:137940/143‑1 (MQ=255)                                                                   gCCGGAACCCATCACCTACCGCACGTTCAAACCAGAACGTGACGGCCGGTTCTGCGCCCGTACCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGt                                                                            <  1:264975/143‑1 (MQ=255)                                                                    ccGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGCGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGCAACACCGTGGCGTCATCtgtgcgcggtg                                                                           >  1:749732/1‑136 (MQ=255)                                                                       gAATCCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGATAAGTgcgg                                                                        <  1:445752/143‑1 (MQ=255)                                                                        aaaCCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTgcggc                                                                       <  1:498751/143‑1 (MQ=255)                                                                            cATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGCCACCTATGAGAAGTGCGGCGtgg                                                                   >  2:406372/1‑141 (MQ=255)                                                                            cATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGAGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTg                                                                   >  1:485512/1‑143 (MQ=255)                                                                              tCAACTACCGTACGTTCAAACAAAAACGGTACGTCCATTTCTGCGTCTTTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGaa                                                                 <  1:534238/143‑1 (MQ=255)                                                                                      cGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCa                                                         <  1:570823/143‑1 (MQ=255)                                                                                        tACGGTCAAGCCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGa                                                       <  2:53738/143‑1 (MQ=255)                                                                                         aCGTTCAAGCCAGAGCGTTACGGCCTTTTCTGCGCCCGTGTCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGAc                                                      <  2:705067/143‑1 (MQ=255)                                                                                              cAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACCAGAGACACTTTGTTTAGGCCAAGCGCCTGAAACACCGTGGCGTCATCTGTGCGAAGTGCGGCGTTGAAGTGACCCGGACTCAAg                                                 >  1:769185/1‑143 (MQ=255)                                                                                                   cAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAGGTGACCCAGACTAAAGTACGc                                            >  1:515696/1‑143 (MQ=255)                                                                                                        tgtgtCGGCGTTTTCTGCGCCGGGATCTTTGGGCCGGTAAAAGATTGCGAGTGCTTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGa                                       <  2:680802/142‑1 (MQ=255)                                                                                                                       tGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAGCAGCGTGGCGTCATCTGTGAGGAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGGAGGGGccgcgg                        >  1:373355/1‑139 (MQ=255)                                                                                                                             cGTATCTTTGGGCCGGTAAAGGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGTATGGGCCACATCGAACt                  <  1:856376/143‑1 (MQ=255)                                                                                                                                   tttGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGTATGGGCCACATCGAACTGGCTTc            >  1:657351/1‑143 (MQ=255)                                                                                                                                     tGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACGCCCCATAAATAACGCCGTGAGCGTATTGGCCACCTCGAACTGGCTTccc          >  1:848327/1‑143 (MQ=255)                                                                                                                                     tGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGTATGGGCCACATCGGACTGGCTTccc          >  1:68022/1‑143 (MQ=255)                                                                                                                                        gCCGGTAAAAGATGACGAGTGCCTGGGCGGTAAGTACAAGCGCCTGAAACACCGGGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGTATGGGCCACATCGAACTGGCTTCCCCGa       <  2:702562/143‑1 (MQ=255)                                                                                                                                             tAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGGGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGTATGGGCCACATCGAACTGGCTTCCCCGACTgcg  >  1:747861/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                               TGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGAGCGTATGGGCCACATCGAACTGGCTTCCCCGACTGCG  >  NC_000913/4185402‑4185684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.