| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 653,049 | T→G | 21.0% | V272G (GTG→GGG) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 653,049 | 0 | T | G | 21.0% | 122.3 / 2.6 | 67 | V272G (GTG→GGG) | citA | sensory histidine kinase in two‑component regulatory system with CitB |
| Reads supporting (aligned to +/- strand): ref base T (32/18); new base G (10/6); total (43/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCATCTCAA > NC_000913/652813‑653286 | tCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAgggg > 1:712772/1‑239 (MQ=255)tCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCCGGGGCTGAGTTCACCCAGACGGCAATGGTTGGGAAAACCAATTGTGGAAgggg > 2:655455/1‑239 (MQ=255) ttGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGc > 1:417537/1‑238 (MQ=255) ttGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACACGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCGGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCCGAGTTCCCCCGGCCGGCAATGGTTGGGTAAACCCATTGTTGAAAGGGTAA‑GGc > 2:218625/1‑238 (MQ=255) tGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCACAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCCATGGTTGGGTAAACCCCTTGTTG‑AGGGGTGACGGCCCGCCGCTTTTTTTaac > 2:44401/1‑237 (MQ=255) tGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCGGGGGGTGAGTTCCCCCGGACGACAATGGTTGGGAAAAACCATTGTTGAAGTGGTTG‑GGCCCGCCGCTTCTTTTAcg > 2:222583/1‑238 (MQ=255) cgcgCATACCCGTCGGAAGTTGAGGGGCAGGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGaa < 1:284784/238‑1 (MQ=255) gcgcATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAGGGGGTCA‑GGCCCGCCGATTTCTTTAGCggaaa > 2:530208/1‑235 (MQ=255) gcgcATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACa > 1:547047/1‑239 (MQ=255) cgcATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGCTTAGTTGGGTTTATGAAGGGCTGATTGCGGGGGATCCGCACGTTTACATTACAGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGCAGCAAATGGATGGGGAAACCCATTTGTAAAGAGGTCA‑GGCCCCCGGCTTTTTTTACCGaaaaa > 2:349099/1‑236 (MQ=255) ctgatgGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGGTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCCAGAAAGATGCTGCGGCTGGGTTCCCCCGGACGGCACTGGTAGGGTAAAACCATTGTTGAAGGGGTAA‑GGCCCGCCGATTTCTTTACCGAAAAAATAGATGaaaaagataa > 2:1001341/2‑234 (MQ=255) atgatgGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGAGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCGGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGACCGGATTGATGAAAAACGTCa > 1:616327/1‑239 (MQ=255) gggCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGCTTTCTTTACCGAACAGATTGTTGAAAAACGCCAGGCtg > 1:955750/1‑239 (MQ=255) gcaaaaGCAAACCGCACGCGTGGGCCGTCAGCAAGGGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATGGGGGTGGTCCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCg < 1:900595/235‑1 (MQ=255) aaaCCGCACGGGGGGCCCGTCAGCAAGGGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCGGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATATGGTGGCGAACTTTa < 1:218625/237‑1 (MQ=255) aaTCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACg > 1:387058/1‑239 (MQ=255) tgccgcgggTGGTCGGTCAGGAAGAGGGGCTGTTTGGTTCGTTTTAAGGAGGGCGGGTTGGGGGAGATCCGCTGGGTTAGTTTACCGCCGT‑TAGTCGTAGCGCAAGAAAGTTGGTGGGGTTGGGTCCCCCGGGAGGGCAATGGTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGt < 2:176181/231‑1 (MQ=255) tcccACGCGTGGTCGGTCAGCAAGAGGCGCTGTTTAGTCGGGTTTATAAAGGTCTGATTGCGGTGGATCCGCATGGTTACATGTCCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAACCCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGGCAGGATGTGGTGGCGAACTTTAACGGt < 1:503516/236‑1 (MQ=255) cgcgTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTAGTGAAAAACGTCAGGATGTGGGGGGGAACTTTAACGGTCTGAg > 1:514066/1‑239 (MQ=255) gcgTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTTCCGACAAAATTGATAAAAAACGTCAGGAGGGGGTGGCGAACTTAAAGGGTcgaagg > 2:503516/1‑234 (MQ=255) tCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGACCAGATTGATGAAAAACGTCAGGTGTTGGTGGCGAACTTTAACGGACTAAGCGTTATTGC‑Ca > 1:417681/1‑239 (MQ=255) agagGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCCGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTTTTGC‑CAACCggg > 1:824523/1‑239 (MQ=255) cTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTAt > 1:492816/1‑239 (MQ=255) tttttttttggttttATAGAGGGCTGATGGGGGGGGTCCCGGAGGGTACAATTCCCGCCAA‑CAAGCGAAACGCAAGAAAGATGGGGGGGTTGGGTTCCCCGGGCCGGAATTGGTGGGGTAAACCCATTGTGGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTAt < 2:387058/226‑1 (MQ=255) tGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGGTGAAAAACGTCAGGATGTGGTGGCCAACTTTAACGGCCTGAGCGTTATTTC‑CAACCGGGAAgacaa > 2:83733/1‑234 (MQ=255) tAGTTCGGTTTAAGAAGGTCTGTTTGGGGTGGACCCGAATGGTTCAATTACCGCCAT‑CAATCGAAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGtt < 1:530208/239‑1 (MQ=255) cGGTTTATGAAGGGTTGAGTGGGGTGGTCCCGCATGGTTACATTACCGCCAT‑CAAGCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCATTGTGTGGGTAACCCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGt < 1:218396/239‑1 (MQ=255) tttATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGtgat > 1:606379/1‑239 (MQ=255) tttATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAATTCCCCCGGACGGCAATGGTGGGGAAAAACCATTGTTGAGGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGACAAACGTCGGGCAGTGGTGGCGAACTTTAAAGGAGTAAGCGGTATTGC‑CAACCGGGAGGCAACTAGTTTAgatgat > 2:29588/1‑239 (MQ=255) tttATGAAGGGCTGATTGCGGTGGATCCGCATGGTTAAATTACCGCCAT‑CAATCGTACCGCAAGAAAAATGCTGGGGCTTAGTTCCCCAGGACGGCAATGGTTGGGTAAACCCATAGTTGCAGGGGCCA‑GGCCCGCCAATTCTTTTACCGAACAGCTTGTTGCAAAACGTACGGATGTGGTGTCGAACTTTAAGTGTCTGCACATTATTAC‑CAACCCGGACGCAATTCGGTCGGGtggt > 2:507655/1‑237 (MQ=255) gAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGGTAAGGGGAT‑GAttt > 2:11572/1‑239 (MQ=255) ggCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAATGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGTTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCCGGTGTTGGGGGCGAAATTTAACGGTATGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGGT‑GGttggtgg > 2:656093/1‑234 (MQ=255) gCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAGTCGTAACGCAAGAAAGGTGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGGAAACCCATTTTTGAAGGGGTCA‑GGCCCGCCAATTTCTTTACCGAACAGATGTATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGCTGGGGCGTTATTGC‑CAACCGTGAAGCCTTTCGTGCAGGTGAT‑GATTTgtggg > 2:843488/1‑235 (MQ=255) gCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGGGCGTTATTGC‑CAACCGGGAAGCTATTCGTTTAGGGGAT‑GATTTGCTgg > 2:716386/1‑239 (MQ=255) aTTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGAT‑GATTTGCTggggg > 1:96983/1‑238 (MQ=255) tggtgggggATCCGGTTTGTTTCATTTCCCCCATGCAAGTGTAACCTAGGAATGGAGCTGGGGCCGGTTTCCCCCGGACGGAAATGGTTGGGTAAACCGATTGTGGAGGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGc < 2:616327/232‑1 (MQ=255) aaccGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCAGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGCGGTGGTGGCGCCCTTTAACGGTCTGAGCGTTATTGC‑CCACCGGGGAGCACTTCGTTACGGTGAT‑GATTTTCTGGGGGCCATTAtaa > 2:765198/3‑235 (MQ=255) gTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGACCAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGGCTGAGCGTTATTGC‑AAACCGGGAAGCTATTAGGTCAGGTGAG‑GTTTTGTTGGGGGCCATTATCAGC‑tttgtaggt > 2:691453/1‑233 (MQ=255) cATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAg > 1:832949/1‑239 (MQ=255) tACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGCT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACg > 1:484024/1‑239 (MQ=255) cGCCAT‑CACCCGTAACGCAAGACAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGTGTGGGTAAACCCATTGTTGCAGGGGTCC‑GGCCCCCCGATTTCTTTACCGAACAGATTGTTGAAAAACACCGGGATG‑GGTGGTCGACTTTTAAGGACCGGGGGTTTATGCACAACCGGGAAGATATTC‑ATCCGGGGATGGATTTGC‑GGGGGGCACTGTCAGCAGTTGGTAGAAAAGAGGaaa > 2:1029196/1‑239 (MQ=255) cGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGaaa < 1:44401/239‑1 (MQ=255) gCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGGAGCTATTCGTTCAGGGGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTGGTAAAGCCGAAAt > 1:549944/1‑239 (MQ=255) aT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCAATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGAT‑GTTTTGCTGTGGGCCATTATCGTG‑TTTGCTATTAAAAACGAAAttt > 2:227084/1‑238 (MQ=255) t‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGCCGAAATTTc > 1:835742/1‑238 (MQ=255) cGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGCTGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCt > 2:595992/1‑239 (MQ=255) cgaaagaaagaTGTTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAACCCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATg < 1:929341/236‑1 (MQ=255) gaaagaTGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCa > 1:344203/1‑238 (MQ=255) tgttGGGGCTTGTTTCCCCCGGGCGGAATTGGTTGGGTAAACCCGTTGTAGAAGGGGTAA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGAc < 2:96983/235‑1 (MQ=255) gtttgttccccccGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATa < 1:655455/230‑1 (MQ=255) gtcgtcattttttGGGTAACCCCTTTTTTGAGGTGGTCA‑GGCCCGTCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGGGGTTGCTAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTgag < 2:514066/228‑1 (MQ=255) gACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTAt < 1:554037/169‑1 (MQ=255) gACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGATGGGGGCCATTAt > 2:554037/1‑169 (MQ=255) aCGGCATTGGTTGGGTAACCCCATTTTTAATGTGGCCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGGCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGTAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTgag < 1:545622/238‑1 (MQ=255) aCGGCAATGGTTGGGTAAACCCATTTTTGAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTgag < 1:691453/238‑1 (MQ=255) tgtattGGTTGAGTAAACCTTTTTTTGAA‑TGGGCACGCCCCTCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGagag < 2:835742/233‑1 (MQ=255) gtaaagggTTGGGTAAACCCATTGTTGAA‑TGGGCAGGGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGagag < 1:1001341/232‑1 (MQ=255) cccATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGc‑c < 1:528258/102‑1 (MQ=255) cccATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGc‑c > 2:528258/1‑102 (MQ=255) ccATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGacac > 1:108207/1‑239 (MQ=255) ggttgttgAATTGGCCA‑GCCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCGCCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACg < 1:519164/237‑1 (MQ=255) ttttagAAGGGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAg < 1:716386/234‑1 (MQ=255) tgttgAAGTGTTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGCGCGGTATTGC‑CAACCGGGAAGCTATTCGTTCAGGGGCT‑GATTTGCTAGGGTCCATTATCCGC‑TTTCGTAGTAAAAGCGAAATTTCCACCATCAATGCGTAACTTACGCACATAAAACAAAAAGATAAGACCCTTCGTACTTTGCGccaataca > 2:945858/1‑234 (MQ=255) tgttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGCGAGCCTTCTTCCATTGCGACACGAGc > 1:767929/1‑239 (MQ=255) tgttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACCCGAGc > 1:293664/1‑239 (MQ=255) tgttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGACCCTTCGTCCATTTGGACACGAg > 1:398278/1‑238 (MQ=255) ttgAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCAt < 1:11572/239‑1 (MQ=255) tgaaaGTGTTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCAt < 1:227084/236‑1 (MQ=255) gTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGCCGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAACAAAAACGTTGAGAGCCTTCGTACATAGCGACCCGAGccacacaa > 2:267598/1‑232 (MQ=255) | TCTGATGTTGCTGTCGTGGTTCCTGGCCGCGCATATCCGTCGGCAGATGATGGGCATGGAGCCAAAGCAAATCGCACGCGTGGTCCGTCAGCAAGAGGCGCTGTTTAGTTCGGTTTATGAAGGGCTGATTGCGGTGGATCCGCATGGTTACATTACCGCCAT‑CAATCGTAACGCAAGAAAGATGCTGGGGCTGAGTTCCCCCGGACGGCAATGGTTGGGTAAACCCATTGTTGAAGTGGTCA‑GGCCCGCCGATTTCTTTACCGAACAGATTGATGAAAAACGTCAGGATGTGGTGGCGAACTTTAACGGTCTGAGCGTTATTGC‑CAACCGGGAAGCTATTCGTTCAGGTGAT‑GATTTGCTGGGGGCCATTATCAGC‑TTTCGTAGTAAAGACGAAATTTCCACCCTCAATGCGCAACTGACGCAAATAAAACAATACGTTGAGAGCCTTCGTACATTGCGACACGAGCATCTCAA > NC_000913/652813‑653286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |