Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 734,765 T→G 23.1% pseudogene (633/1521 nt) rhsO → pseudogene, Rhs family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913734,7650TG23.1% 75.4 / 2.9 73pseudogene (633/1521 nt)rhsOpseudogene, Rhs family
Reads supporting (aligned to +/- strand):  ref base T (39/13);  new base G (16/4);  total (56/17)
Fisher's exact test for biased strand distribution p-value = 7.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTACGGCTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATG  >  NC_000913/734531‑734988
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                
gTACGGCTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCCTCCGCAGTCCGGCGGCCGAGAACGGGGCCGTGCGGGGGTCCCCCCGGGCGCGGGGCAGACGGCCGAACGGCgggaaagggaaa                                                                                                                                                                                                                              >  2:56948/1‑239 (MQ=11)
     gCTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCCGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGTGTTCCCGCCGGGGCGGGGGCAAGGGGGCGCCCGGCTGGGAAGGGAAAAccgg                                                                                                                                                                                                                         >  2:841849/1‑237 (MQ=11)
      cTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTg                                                                                                                                                                                                                         >  1:84614/1‑238 (MQ=31)
      cTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGGGGTCCCGCCGGGGCTGGGGCAGAGGCCCGACCGGCTGGAAAGTGGAATCCTg                                                                                                                                                                                                                         >  1:542050/1‑238 (MQ=11)
         ggACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCCCAGCCTGGCGGCAACCCCTCAGCAGTCCGGCGGCGAAGACGGTGGCCGGGGGGGGTTCCCCCCGGGGCCGGTGCGGGGGCTCAGCCGGCTGGGAAAGGAAAACCCgggca                                                                                                                                                                                                                     >  2:1076441/1‑236 (MQ=11)
            gggcccccGCCTCCCCACGATACAGACCGAAAACCCCCGCACCCAGACGTTTTACCGGCGGGGAGGCTCACCCCCACTCACCAGGGTTGAAACCGCCACCGGTGAGCGGGCGAAACCGCAGCGCCGCAGCCTGGCGGATCCCCTTCAGCAGCCGGGCGGCGAAGACGGTGGGAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAc                                                                                                                                                                                                                   <  2:994396/232‑1 (MQ=11)
               cGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGGCCGGCGGCGAAGACGGTGGCAGGGTGGGGTTCCCGCCCGTGCTGGTGCCGATGCTCGACCGGCTGGAAAGTGAAAACCTGGCGGAACggg                                                                                                                                                                                                               >  2:645456/1‑239 (MQ=11)
                    gCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGCCGGTGGCAGGGTGGTGTTCCCGCCGGGGCTGGGGCAGATGCTCGACCGGCTGGAAAGGGAAACCCTGTCTGCCCgggggggg                                                                                                                                                                                                          >  2:747947/1‑234 (MQ=11)
                       tGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCggggggggggg                                                                                                                                                                                                       >  1:434282/1‑231 (MQ=14)
                                   aGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTTAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACGGGCTGGAAAGTGAAAACCCGGCTGACCGGgtgcggtgggcaaggccgcgc                                                                                                                                                                                           >  1:742885/1‑221 (MQ=11)
                                     aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACGGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGCCGGCGAAGACGGTGGCAGGGTGGTGGTCCCGCCGGGCCTGTTGCCGATGCCCGACCGGCGGGCAAGGGAAATCCTGCAGGGCCGGGGGGGGGGGGAAAgcacccccgg                                                                                                                                                                                         >  2:907697/1‑231 (MQ=11)
                                     aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGCAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGCCCAAGACGGTGGCAGAGTGGGGTTCCCGCCGGGGCTGGTGCTGCCGCTCGACCGGCTGGAAAATGGAAACCGGGCTGACCGGGGGGGGGCGGaaaagccccccga                                                                                                                                                                                         >  2:363263/1‑229 (MQ=11)
                                     aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGACGACGGTGGCACTGTGGTGTTCCCGCCGGTGCCGGGGCCGATGCCCGACCGGCCTGAAAAGGAAACCCCGGCGGCCCggggaggtgggggaacgcgcccccg                                                                                                                                                                                         >  2:787705/1‑217 (MQ=11)
                                     aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGACATCCTGGCTGACCGGGGGGGGGAGGGAAGGcgccgcgg                                                                                                                                                                                         >  1:734316/1‑237 (MQ=9)
                                          cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGGGGAAAGCCGCCCctggctgg                                                                                                                                                                                    >  1:237259/1‑239 (MQ=14)
                                          cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCgctggctg                                                                                                                                                                                     >  1:1035482/1‑238 (MQ=14)
                                          cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGGGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGAGGTAGGAAAGCCGCCgctggccg                                                                                                                                                                                     >  1:637539/1‑236 (MQ=9)
                                          cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGTGTGCCCGCCGGGGCTGGGGCGGAGGGCCGGCCGGGGGGAACGTGAAATGCTGTCTGACCGGGGGAGTGAGGAAAgccccggggggcggg                                                                                                                                                                                    >  2:607388/1‑227 (MQ=11)
                                          cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGAAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGGGGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAACGGGCGAGTGGGCGATGACGCCgcgggctgt                                                                                                                                                                                    >  1:590968/1‑238 (MQ=11)
                                               cccGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTAGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCCCGACCGGCTGGAGAGGGCAAACCTGGCCGCCCGGGGGAGGGGGGGAAACGGCCgctggggggcgcgg                                                                                                                                                                               >  2:226024/1‑230 (MQ=11)
                                                    aTCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGCAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGCGGTGTTCCCGCCGGAGCTGGCGCAGATGCTCGCACGGCTGGAAAGTGAAATCATGGCTGACCGGGTGAGGGAGGAAAGCCACCCCTGGCTGGCATGGTGCg                                                                                                                                                                           >  1:633109/1‑238 (MQ=11)
                                                    aTCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCCCGACCGGCCGGACAGCGCAATCCTGGCTGACCGGGGGAGGGGGAAAAACCCCCACGGGCCGGCaacacgcgg                                                                                                                                                                          >  2:452431/1‑231 (MQ=11)
                                                                      ccGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGGTGCTCGACCGGCTGGACAGTGAAATCCTGGCTTCCCGGGGGGAGGGGGAAAACCGCCGCGGGCGCGCCTCGGGGGGCCTGAgggggtggaaagg                                                                                                                                                        >  2:341258/1‑229 (MQ=11)
                                                                        ggggAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGGGCAGATGc                                                                                                                                                      >  1:183995/1‑239 (MQ=14)
                                                                                tCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGGGCAGATGCTCGACCGGCTGGCAAGGGAACTCCCGGCTGACCGGGGGGGGGAGGAAAGCCCCCCCTCGCTGGCACCGGGCGGCCTTGCGGGGGAGCCGGAGCAAAAACaa                                                                                                                                              >  2:593539/1‑238 (MQ=11)
                                                                                                 ggTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGCAAGCCACCCCTGGCTGGCATCGTGCGGCCTGACGGGGGAGCAGATGCAAAACCAGATGGACCCGGTGAac                                                                                                                              >  1:1026881/1‑238 (MQ=255)
                                                                                                 ggTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGGGAGGGAGGGAAGCCGCCGCTGGCCGGCACCGTGCGGCCTGACGGGGGGGCAGATGAAAAAACAGAGGGGACCCgggtcaa                                                                                                                              >  2:912701/1‑234 (MQ=11)
                                                                                                   ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGCGGTacac                                                                                                                            >  1:949982/1‑238 (MQ=16)
                                                                                                    tGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGGGTGAGGCAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGGGGAGCAGATGCAAAACCAGAGGGACCCgggggaaccc                                                                                                                           >  1:772741/1‑230 (MQ=255)
                                                                                                      aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGGAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCCTCGTGCGGCCTGACGGGGGGGCAGATGCAAAACCAGAAGGAACCGGGGCacaccgcg                                                                                                                        >  2:259228/1‑235 (MQ=11)
                                                                                                      aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGTGCAGATGCAAAACCAGAGGGGCCCGGGGTACACGCCg                                                                                                                        >  1:36919/1‑239 (MQ=16)
                                                                                                      aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCg                                                                                                                        >  1:747123/1‑239 (MQ=33)
                                                                                                      aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGCGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTCCGGCCTGACGGTGGGGCAGATGCAAAACCAAATGGACCCGGGTTACACCCCg                                                                                                                        >  1:588383/1‑239 (MQ=11)
                                                                                                           gCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCGGGCATCGTCCGGCCTGACGGCGGAGCAGCTGCAAAACCAGATGGACCCGgggtcaccaccgccgcg                                                                                                                   >  1:59289/1‑226 (MQ=11)
                                                                                                           gCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGAGGGGGGAAAGCCGCCGCTGGCGGGCACCGTGGGGCCTGACGGTGGGGCAGAGGAAAAACCAAATGGACCCGGGGGAGACACCgggggg                                                                                                                   >  2:287799/1‑235 (MQ=11)
                                                                                                            ccACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGCGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAACTCCGGGCTGACCGGGTGCGGGCGGAAAGCCGCCGCTGCCTGCGATGTGGCGGCCGGACGCGGGGGCAGATGCAAAACCGAAGGGACCCGgggtcagccccggcggca                                                                                                                  >  2:605957/1‑225 (MQ=11)
                                                                                                             cACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGGGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACCCCGACGCGaa                                                                                                                 >  1:646339/1‑239 (MQ=17)
                                                                                                             cACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGCGGAGCAGATGCAAACCCAGATGGACCCGGTGTACACGCCGACGCGaa                                                                                                                 >  1:785227/1‑239 (MQ=17)
                                                                                                                          gCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGGCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCGGACCGGGGGAGTGAGGAACGCCCCCGCGGGGCGGCATCGTGCGGCCTGGCGGTGGAGCAGAGGCAAAACCAGAAGGGCCCGGGGGACACGCCGGCGCGAAAAAGCCaacggca                                                                                                    >  2:1095692/1‑233 (MQ=11)
                                                                                                                                              ccTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGGGGGGCCTGACGGGGGAGCAGATGACAAACCAGATGGACCCGGGGTACACGCCGGGGCGAGAAACCAACCTgacaaccgggcacacacgcggcc                                                                                >  2:391693/1‑217 (MQ=11)
                                                                                                                                                        aCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGgc                                                                      >  1:1105460/1‑239 (MQ=31)
                                                                                                                                                                    tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGAc                                                                                                                                       >  1:328552/1‑162 (MQ=31)
                                                                                                                                                                    tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCCCTGGCGCTTGTCAGCAc                                                          >  1:732065/1‑239 (MQ=18)
                                                                                                                                                                    tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCAGGCGCGACAAATCCACCTGTACCACTGCGACCATCGCGGCCCGCCGCTGGCGCTTGTcccgc                                                           >  1:862809/1‑234 (MQ=16)
                                                                                                                                                                             gagggcGGGGGCAGTGGGGTGTTCCCGCCGGTGCTGGGGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAgggg                                                  <  1:391693/233‑1 (MQ=16)
                                                                                                                                                                             agaggtggtggcgggggtgttttCCCGCCGGTGCGGGTGCAGATGCTCGCCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAgggg                                                  <  1:17781/217‑1 (MQ=11)
                                                                                                                                                                             aaagcggggggtgggtgggtttccccGCCGGTGCTGGTGCAGATGCCCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAgggg                                                  <  1:841849/215‑1 (MQ=11)
                                                                                                                                                                              aaGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCCCTGCGACCATCGCGGCCTGCCCCTGGCGCTTGTCAGCACGGAACGGGCa                                                >  1:912498/1‑239 (MQ=18)
                                                                                                                                                                                     tGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGGAGATGCTAAACCCGATGGCCCCGGGGTCCACGCCGGCGGGAAAAAGCCACCGGTACCACGGCACCCACCGCGGCCTGCCGGCGGAGCTTGGAACGCCCGAAGGGGCaaacggag                                         >  2:327232/1‑233 (MQ=11)
                                                                                                                                                                                         ggggtggtgTCCCCGCCGGTGCTGGGGCAGATGCTCGACCGGCTGGAAGGTGAAACCCTGGCTGCCCGGGTGAGTGAGGAAACCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGt                                      <  1:259228/235‑1 (MQ=255)
                                                                                                                                                                                           tgttgtGTCCCCCCGGGTTGTGGTGCAGTTGCTCGACAGGCTGGAAGGTGAAATCCCGGCTGACCGGATGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCCTCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                   <  2:434282/239‑1 (MQ=11)
                                                                                                                                                                                           tgtgGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGGGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCACCACGGAAGGGGCAACAGAATGGGgc                                    >  1:637605/1‑238 (MQ=255)
                                                                                                                                                                                            gtgattaaggggcaggTGCGGGGGCAGAGGCTCGACCGGCGGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                   <  1:401927/224‑1 (MQ=11)
                                                                                                                                                                                            gggttgcccccGGCGGTGGTGGGGGAGGTGCCCGACGGGGTGGAAAGTAAAATCCTGGCGGCCGGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                   <  2:911409/230‑1 (MQ=11)
                                                                                                                                                                                            ggggtgTTCCCGCGGGGTGTGGGGGAGATGCCCGGCCGGGTGAAAGGTGAAATCCGGGCTGACCGGGGGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                   <  1:593539/236‑1 (MQ=11)
                                                                                                                                                                                             tggtgTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGGgcgcg                                 >  1:836612/1‑238 (MQ=37)
                                                                                                                                                                                               gtttccccGCCGGTGCTGGTGCAGATGCTCGCCCGGCTGGAAAGTGAAAGCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAg                                <  1:1076441/233‑1 (MQ=255)
                                                                                                                                                                                                 gtcccggccgGTGCGGGGGGAGATGCTCGACCGGGTGGAAAGGGAAATCCTGGCTGACCGGGGGGGGGGGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGaa                              <  1:226024/232‑1 (MQ=11)
                                                                                                                                                                                                 gtTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCCGATGGACCCGGGGTCCACGCCGGCGCGAAAAATCCACCAGGACCACGGCGACCATCGGGGCCTGCCCCCGGGGCTTTTCAACACGGAACGGGCACAAGACTGGGCGGCAGaaa                             >  2:813905/1‑238 (MQ=11)
                                                                                                                                                                                                 gtTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCCCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGGGCGCAGAAt                             >  1:990779/1‑239 (MQ=37)
                                                                                                                                                                                                    cccGCCGGGGTGGGGCCAGATGCCCGACGGGTGTGAAAGGGAAAGCCGGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACg                          <  1:481366/239‑1 (MQ=11)
                                                                                                                                                                                                     ccgccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGACTGGTGCGCCGAATACGa                         >  1:922185/1‑239 (MQ=37)
                                                                                                                                                                                                     ccgccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGCCCATCGCGGCCCGCCGCGGCCCCTTGTCAGCACGGAAAGGGCACCAGAATCGGGCGAAGAAAACGa                         >  2:292720/1‑239 (MQ=11)
                                                                                                                                                                                                       gccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGCAGGGGCAACAGAATGTGGCGCAGAATACGATg                       >  1:625992/1‑239 (MQ=255)
                                                                                                                                                                                                          ggTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGAAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAAt                    >  1:365277/1‑239 (MQ=37)
                                                                                                                                                                                                            tGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACCCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCGCCCACTGGGGCTTGTCCGCCCGGAAGGGGAAACAAAAAGGGGGGCaaaaaaaaggaaaaga                  >  2:612099/1‑227 (MQ=11)
                                                                                                                                                                                                                ggggCAGATCCCCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCa              <  1:1095692/236‑1 (MQ=255)
                                                                                                                                                                                                                   cacaaggccagACCGGGTGGAAAGGGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAAc            <  1:758404/228‑1 (MQ=255)
                                                                                                                                                                                                                    gcgggggcgcacccgggggAAAGGTGAAACCCGGGGCGGCCGGGTGGGTGGGGAAAGCCGCGGCGGGCGGGCAGCGGGCGGCCGGACGGTGGAGAAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAAc            <  2:1105460/221‑1 (MQ=11)
                                                                                                                                                                                                                      gATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCTTCGTGCGGCCTGACGGGGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGCCCTGCCCCTGGCCCGTGTCACCACCGAACGGGCCACAAAATGGTGCGCAAAATACGa                         >  2:401927/1‑222 (MQ=11)
                                                                                                                                                                                                                      gATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCCTCGCGGCCTGCCCCTGGCGCTTGGCAGCACGGCAGGGGCAACAACACGGGGCGCGCAAAACGATGAATGGGGCAACcagc        >  2:763357/1‑239 (MQ=11)
                                                                                                                                                                                                                        tGCTCGACCGGCTGGAAAGTGAAACCCTGGCTGACCGGGGGAGTGGGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAACCCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACctgc        <  1:1014149/237‑1 (MQ=255)
                                                                                                                                                                                                                           tggccgggCGGGAAAGTGAAATCCGGGGTGGCCGGGGGGGGGGGGAAAGCCCCCGCGGGCTGGCATCGTGCGGCCTGACGGTGGAGAAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCCCCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCtgaat   <  2:59289/233‑1 (MQ=11)
                                                                                                                                                                                                                            cGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGGACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCGGCCGCTGGCGCTTGTCAGCCCGGAAGGGGCAACAGAAAGGTGCGCAGAAAACAATAAATGGGGCAACCCGCtgaatg  >  2:649008/1‑239 (MQ=11)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                
GTACGGCTGGGACGGCGACCGCCTGACCACGATACAGAACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATG  >  NC_000913/734531‑734988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: