Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 734,789 T→G 21.3% pseudogene (657/1521 nt) rhsO → pseudogene, Rhs family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913734,7890TG21.3% 82.5 / 2.3 70pseudogene (657/1521 nt)rhsOpseudogene, Rhs family
Reads supporting (aligned to +/- strand):  ref base T (38/12);  new base G (14/6);  total (52/18)
Fisher's exact test for biased strand distribution p-value = 7.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCG  >  NC_000913/734568‑735022
                                                                                                                                                                                                                              |                                                                                                                                                                                                                                          
aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACGGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGCCGGCGAAGACGGTGGCAGGGTGGTGGTCCCGCCGGGCCTGTTGCCGATGCCCGACCGGCGGGCAAGGGAAATCCTGCAGGGCCGGGGGGGGGGGGAAAgcacccccgg                                                                                                                                                                                                                           >  2:907697/1‑231 (MQ=11)
aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGCAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGCCCAAGACGGTGGCAGAGTGGGGTTCCCGCCGGGGCTGGTGCTGCCGCTCGACCGGCTGGAAAATGGAAACCGGGCTGACCGGGGGGGGGCGGaaaagccccccga                                                                                                                                                                                                                           >  2:363263/1‑229 (MQ=11)
aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGACATCCTGGCTGACCGGGGGGGGGAGGGAAGGcgccgcgg                                                                                                                                                                                                                           >  1:734316/1‑237 (MQ=9)
     cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGGGGAAAGCCGCCCctggctgg                                                                                                                                                                                                                      >  1:237259/1‑239 (MQ=14)
     cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCgctggctg                                                                                                                                                                                                                       >  1:1035482/1‑238 (MQ=14)
     cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGGGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGAGGTAGGAAAGCCGCCgctggccg                                                                                                                                                                                                                       >  1:637539/1‑236 (MQ=9)
     cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGTGTGCCCGCCGGGGCTGGGGCGGAGGGCCGGCCGGGGGGAACGTGAAATGCTGTCTGACCGGGGGAGTGAGGAAAgccccggggggcggg                                                                                                                                                                                                                      >  2:607388/1‑227 (MQ=11)
     cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGAAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGGGGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAACGGGCGAGTGGGCGATGACGCCgcgggctgt                                                                                                                                                                                                                      >  1:590968/1‑238 (MQ=11)
          cccGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTAGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCCCGACCGGCTGGAGAGGGCAAACCTGGCCGCCCGGGGGAGGGGGGGAAACGGCCgctggggggcgcgg                                                                                                                                                                                                                 >  2:226024/1‑230 (MQ=11)
               aTCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGCAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGCGGTGTTCCCGCCGGAGCTGGCGCAGATGCTCGCACGGCTGGAAAGTGAAATCATGGCTGACCGGGTGAGGGAGGAAAGCCACCCCTGGCTGGCATGGTGCg                                                                                                                                                                                                             >  1:633109/1‑238 (MQ=11)
               aTCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCCCGACCGGCCGGACAGCGCAATCCTGGCTGACCGGGGGAGGGGGAAAAACCCCCACGGGCCGGCaacacgcgg                                                                                                                                                                                                            >  2:452431/1‑231 (MQ=11)
                                 ccGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGGTGCTCGACCGGCTGGACAGTGAAATCCTGGCTTCCCGGGGGGAGGGGGAAAACCGCCGCGGGCGCGCCTCGGGGGGCCTGAgggggtggaaagg                                                                                                                                                                                          >  2:341258/1‑229 (MQ=11)
                                   ggggAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGGGCAGATGc                                                                                                                                                                                        >  1:183995/1‑239 (MQ=14)
                                           tCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGGGCAGATGCTCGACCGGCTGGCAAGGGAACTCCCGGCTGACCGGGGGGGGGAGGAAAGCCCCCCCTCGCTGGCACCGGGCGGCCTTGCGGGGGAGCCGGAGCAAAAACaa                                                                                                                                                                                >  2:593539/1‑238 (MQ=11)
                                                           ggTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGCAAGCCACCCCTGGCTGGCATCGTGCGGCCTGACGGGGGAGCAGATGCAAAACCAGATGGACCCGGTGAac                                                                                                                                                                >  1:1026881/1‑238 (MQ=255)
                                                           ggTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGGGAGGGAGGGAAGCCGCCGCTGGCCGGCACCGTGCGGCCTGACGGGGGGGCAGATGAAAAAACAGAGGGGACCCgggtcaa                                                                                                                                                                >  2:912701/1‑234 (MQ=11)
                                                             ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGCGGTacac                                                                                                                                                              >  1:949982/1‑238 (MQ=16)
                                                              tGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGGGTGAGGCAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGGGGAGCAGATGCAAAACCAGAGGGACCCgggggaaccc                                                                                                                                                             >  1:772741/1‑230 (MQ=255)
                                                                aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGGAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCCTCGTGCGGCCTGACGGGGGGGCAGATGCAAAACCAGAAGGAACCGGGGCacaccgcg                                                                                                                                                          >  2:259228/1‑235 (MQ=11)
                                                                aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGTGCAGATGCAAAACCAGAGGGGCCCGGGGTACACGCCg                                                                                                                                                          >  1:36919/1‑239 (MQ=16)
                                                                aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCg                                                                                                                                                          >  1:747123/1‑239 (MQ=33)
                                                                aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGCGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTCCGGCCTGACGGTGGGGCAGATGCAAAACCAAATGGACCCGGGTTACACCCCg                                                                                                                                                          >  1:588383/1‑239 (MQ=11)
                                                                     gCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCGGGCATCGTCCGGCCTGACGGCGGAGCAGCTGCAAAACCAGATGGACCCGgggtcaccaccgccgcg                                                                                                                                                     >  1:59289/1‑226 (MQ=11)
                                                                     gCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGAGGGGGGAAAGCCGCCGCTGGCGGGCACCGTGGGGCCTGACGGTGGGGCAGAGGAAAAACCAAATGGACCCGGGGGAGACACCgggggg                                                                                                                                                     >  2:287799/1‑235 (MQ=11)
                                                                      ccACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGCGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAACTCCGGGCTGACCGGGTGCGGGCGGAAAGCCGCCGCTGCCTGCGATGTGGCGGCCGGACGCGGGGGCAGATGCAAAACCGAAGGGACCCGgggtcagccccggcggca                                                                                                                                                    >  2:605957/1‑225 (MQ=11)
                                                                       cACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGGGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACCCCGACGCGaa                                                                                                                                                   >  1:646339/1‑239 (MQ=17)
                                                                       cACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGCGGAGCAGATGCAAACCCAGATGGACCCGGTGTACACGCCGACGCGaa                                                                                                                                                   >  1:785227/1‑239 (MQ=17)
                                                                                    gCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGGCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAATCCTGGCGGACCGGGGGAGTGAGGAACGCCCCCGCGGGGCGGCATCGTGCGGCCTGGCGGTGGAGCAGAGGCAAAACCAGAAGGGCCCGGGGGACACGCCGGCGCGAAAAAGCCaacggca                                                                                                                                      >  2:1095692/1‑233 (MQ=11)
                                                                                                        ccTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGGGGGGCCTGACGGGGGAGCAGATGACAAACCAGATGGACCCGGGGTACACGCCGGGGCGAGAAACCAACCTgacaaccgggcacacacgcggcc                                                                                                                  >  2:391693/1‑217 (MQ=11)
                                                                                                                  aCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGgc                                                                                                        >  1:1105460/1‑239 (MQ=31)
                                                                                                                              tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGAc                                                                                                                                                                         >  1:328552/1‑162 (MQ=31)
                                                                                                                              tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCCCTGGCGCTTGTCAGCAc                                                                                            >  1:732065/1‑239 (MQ=18)
                                                                                                                              tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCAGGCGCGACAAATCCACCTGTACCACTGCGACCATCGCGGCCCGCCGCTGGCGCTTGTcccgc                                                                                             >  1:862809/1‑234 (MQ=16)
                                                                                                                                       gagggcGGGGGCAGTGGGGTGTTCCCGCCGGTGCTGGGGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAgggg                                                                                    <  1:391693/233‑1 (MQ=16)
                                                                                                                                       agaggtggtggcgggggtgttttCCCGCCGGTGCGGGTGCAGATGCTCGCCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAgggg                                                                                    <  1:17781/217‑1 (MQ=11)
                                                                                                                                       aaagcggggggtgggtgggtttccccGCCGGTGCTGGTGCAGATGCCCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAgggg                                                                                    <  1:841849/215‑1 (MQ=11)
                                                                                                                                        aaGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCCCTGCGACCATCGCGGCCTGCCCCTGGCGCTTGTCAGCACGGAACGGGCa                                                                                  >  1:912498/1‑239 (MQ=18)
                                                                                                                                               tGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGGAGATGCTAAACCCGATGGCCCCGGGGTCCACGCCGGCGGGAAAAAGCCACCGGTACCACGGCACCCACCGCGGCCTGCCGGCGGAGCTTGGAACGCCCGAAGGGGCaaacggag                                                                           >  2:327232/1‑233 (MQ=11)
                                                                                                                                                   ggggtggtgTCCCCGCCGGTGCTGGGGCAGATGCTCGACCGGCTGGAAGGTGAAACCCTGGCTGCCCGGGTGAGTGAGGAAACCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGt                                                                        <  1:259228/235‑1 (MQ=255)
                                                                                                                                                     tgttgtGTCCCCCCGGGTTGTGGTGCAGTTGCTCGACAGGCTGGAAGGTGAAATCCCGGCTGACCGGATGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCCTCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                                                     <  2:434282/239‑1 (MQ=11)
                                                                                                                                                     tgtgGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGGGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCACCACGGAAGGGGCAACAGAATGGGgc                                                                      >  1:637605/1‑238 (MQ=255)
                                                                                                                                                      gtgattaaggggcaggTGCGGGGGCAGAGGCTCGACCGGCGGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                                                     <  1:401927/224‑1 (MQ=11)
                                                                                                                                                      gggttgcccccGGCGGTGGTGGGGGAGGTGCCCGACGGGGTGGAAAGTAAAATCCTGGCGGCCGGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                                                     <  2:911409/230‑1 (MQ=11)
                                                                                                                                                      ggggtgTTCCCGCGGGGTGTGGGGGAGATGCCCGGCCGGGTGAAAGGTGAAATCCGGGCTGACCGGGGGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTgcg                                                                     <  1:593539/236‑1 (MQ=11)
                                                                                                                                                       tggtgTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGGgcgcg                                                                   >  1:836612/1‑238 (MQ=37)
                                                                                                                                                         gtttccccGCCGGTGCTGGTGCAGATGCTCGCCCGGCTGGAAAGTGAAAGCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAg                                                                  <  1:1076441/233‑1 (MQ=255)
                                                                                                                                                           gtcccggccgGTGCGGGGGGAGATGCTCGACCGGGTGGAAAGGGAAATCCTGGCTGACCGGGGGGGGGGGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGaa                                                                <  1:226024/232‑1 (MQ=11)
                                                                                                                                                           gtTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCCGATGGACCCGGGGTCCACGCCGGCGCGAAAAATCCACCAGGACCACGGCGACCATCGGGGCCTGCCCCCGGGGCTTTTCAACACGGAACGGGCACAAGACTGGGCGGCAGaaa                                                               >  2:813905/1‑238 (MQ=11)
                                                                                                                                                           gtTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCCCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGGGCGCAGAAt                                                               >  1:990779/1‑239 (MQ=37)
                                                                                                                                                              cccGCCGGGGTGGGGCCAGATGCCCGACGGGTGTGAAAGGGAAAGCCGGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACg                                                            <  1:481366/239‑1 (MQ=11)
                                                                                                                                                               ccgccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGACTGGTGCGCCGAATACGa                                                           >  1:922185/1‑239 (MQ=37)
                                                                                                                                                               ccgccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGCCCATCGCGGCCCGCCGCGGCCCCTTGTCAGCACGGAAAGGGCACCAGAATCGGGCGAAGAAAACGa                                                           >  2:292720/1‑239 (MQ=11)
                                                                                                                                                                 gccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGCAGGGGCAACAGAATGTGGCGCAGAATACGATg                                                         >  1:625992/1‑239 (MQ=255)
                                                                                                                                                                    ggTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGAAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAAt                                                      >  1:365277/1‑239 (MQ=37)
                                                                                                                                                                      tGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACCCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCGCCCACTGGGGCTTGTCCGCCCGGAAGGGGAAACAAAAAGGGGGGCaaaaaaaaggaaaaga                                                    >  2:612099/1‑227 (MQ=11)
                                                                                                                                                                          ggggCAGATCCCCGACCGGCTGGAAAGGGAAATCCTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCa                                                <  1:1095692/236‑1 (MQ=255)
                                                                                                                                                                             cacaaggccagACCGGGTGGAAAGGGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAAc                                              <  1:758404/228‑1 (MQ=255)
                                                                                                                                                                              gcgggggcgcacccgggggAAAGGTGAAACCCGGGGCGGCCGGGTGGGTGGGGAAAGCCGCGGCGGGCGGGCAGCGGGCGGCCGGACGGTGGAGAAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAAc                                              <  2:1105460/221‑1 (MQ=11)
                                                                                                                                                                                gATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCTTCGTGCGGCCTGACGGGGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGCCCTGCCCCTGGCCCGTGTCACCACCGAACGGGCCACAAAATGGTGCGCAAAATACGa                                                           >  2:401927/1‑222 (MQ=11)
                                                                                                                                                                                gATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCCTCGCGGCCTGCCCCTGGCGCTTGGCAGCACGGCAGGGGCAACAACACGGGGCGCGCAAAACGATGAATGGGGCAACcagc                                          >  2:763357/1‑239 (MQ=11)
                                                                                                                                                                                  tGCTCGACCGGCTGGAAAGTGAAACCCTGGCTGACCGGGGGAGTGGGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAACCCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACctgc                                          <  1:1014149/237‑1 (MQ=255)
                                                                                                                                                                                     tggccgggCGGGAAAGTGAAATCCGGGGTGGCCGGGGGGGGGGGGAAAGCCCCCGCGGGCTGGCATCGTGCGGCCTGACGGTGGAGAAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCCCCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCtgaat                                     <  2:59289/233‑1 (MQ=11)
                                                                                                                                                                                      cGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGGACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCGGCCGCTGGCGCTTGTCAGCCCGGAAGGGGCAACAGAAAGGTGCGCAGAAAACAATAAATGGGGCAACCCGCtgaatg                                    >  2:649008/1‑239 (MQ=11)
                                                                                                                                                                                                        aaaTCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGACGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCAGCCTCa                    >  1:393660/1‑238 (MQ=255)
                                                                                                                                                                                                           tCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCt                 >  1:278543/1‑238 (MQ=37)
                                                                                                                                                                                                           tCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                >  1:462740/1‑239 (MQ=37)
                                                                                                                                                                                                              tggttggcggggtgggtGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag             <  1:649008/230‑1 (MQ=255)
                                                                                                                                                                                                              tGGCTGACGGGGGGGGGGGGGAAGCCCGCCGCTGGCTGCAATCGTGGGGCCTGACGGGGGAGAAGAGGCAAAACCAGATGGCCCCGGTGTACACGCCGGCGCGAAAAATCCCCCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag             <  2:462740/239‑1 (MQ=11)
                                                                                                                                                                                                              tGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag             <  1:763357/239‑1 (MQ=37)
                                                                                                                                                                                                                gCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGGACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTTGCAGCACTGAAGGGGCAAAAGAATGGGGCGCAGAAACCGCTAAATGGGGCAACCGGCTAAATAAAAAAAAACCgaaaaaaacgcgaga           >  2:498667/1‑225 (MQ=11)
                                                                                                                                                                                                                    aCCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAAGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCAGCAGCCCCagaagcgt       >  2:624457/1‑237 (MQ=255)
                                                                                                                                                                                                                          gtagtgggAAAAGCGCCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTTCACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCg  <  1:907697/236‑1 (MQ=255)
                                                                                                                                                                                                                              |                                                                                                                                                                                                                                          
AACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTTGTCAGCACGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCG  >  NC_000913/734568‑735022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: