| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,747,279 | C→A | 15.4% | S50* (TCA→TAA) | ydhS → | putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,747,279 | 0 | C | A | 15.4% | 227.4 / 6.7 | 85 | S50* (TCA→TAA) | ydhS | putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (49/21); new base A (2/12); total (52/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTATGAA > NC_000913/1747045‑1747514 | tGTCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑aaaa > 1:436617/1‑239 (MQ=255) tCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGCTGCCATACAGTGATGAGGAAAACTC‑AAAAat > 1:200188/1‑239 (MQ=255) tCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAat > 1:598569/1‑239 (MQ=255) ccTGAAATTTATCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGCAAGTAACAATGAAAAAACTTGCTATTGTGGATGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTCAACCAACAAACCCCACTTTCTAGTTCCATCTTCGAGCCGGCTGACCAGCCCGGGATCGGGCTGCCGAACAGTAATTAGGGAAAAAC‑aaaaag > 2:608391/2‑238 (MQ=255) aaaTTTCTCAAATTTTAAAAATCCCAACCAAACTTATCGGAAAACCC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:598569/239‑1 (MQ=255) aaaTTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACCCCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:906328/239‑1 (MQ=255) aaaTTTCTCAAATTCATAAAATCTCAACCAAACCTATCTGATAACAA‑TAAATGCGGAAGGATGCGTACAGGTAAGGAACAATGAAAAAAATTGCTATTGTGCGTGCCGGGCCGACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:174990/239‑1 (MQ=255) aaaTTTCTCAAATTATAAAAATCTCAACCAAACTTATATGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:961711/239‑1 (MQ=255) ttCTCAAATTCTAAAAATTCCAACCAAACTTATCTGATAACAC‑TAAAATCGAAAGAAGGCGTACAGGTAAGTAACAATGAAAAAAAGTGCAATTGTGGGTGCCGGGCCTGCGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTgg < 2:1009244/239‑1 (MQ=255) ttCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCTCTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTgg < 1:108419/239‑1 (MQ=255) ctcAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGAACAGGCAAGTAACAATGAAAAACAGTGCTATTATTGTAGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTCTTTCTCATTTTGACCAGGCTAACGAGGCCGGAGTCGGGGTGCCATACAGTGAGAATGAAAACTC‑caacaataggcacgca > 1:65735/1‑226 (MQ=255) ttAAAAATCTCAACCAACTTTATCTTAAAAAAC‑AAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGCGGGTGCCGGGCCTACGGGGATCTACACCGTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGACTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc < 2:457788/238‑1 (MQ=255) caaaaaaTCTCAACCAAACTTATCTGATAACCC‑TAAATTCGAAAGAATGCTTACAGGGAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc < 1:193657/237‑1 (MQ=255) aCTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTA‑AAAAATGATGCTGGCAAATATAGCCAGTATTGAAATAacgc > 2:483707/1‑239 (MQ=255) atgtaaTAACAC‑AAAATTCGAAAAAATGCGTACAGGTAAATAACAATGAAAAAAATTTCTATTGTGGGTGCCGGGCCTACGGGGATCTTCACCTTATTCTCGCTTCTACAGCAACAAACTCCTCTTTCTATTTCTATCTTCGGGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGAt < 1:834498/234‑1 (MQ=255) aTCTGA‑AACACTTAAATTCGAAATTAGGGTTACAGGTAAGAAAAAAGGAAAAAAATTCCTTGGGTGGGTCCCGGGCCTACTGGGATCTAACCCTTATTCCCGCTTCTACAGCAACAAACTCCACTTGCTATTGCTATCTTCGAGCAGGCTGACGAGGCCGGGGTCGGGATGCCATACAGTGATGAGGAAAACTA‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGAt < 2:436617/239‑1 (MQ=255) tAAATTCGACAGATTGCGTACAGGTAAGTAACAATGAAAAAAATTGATATTGTGGGTGCCGGGCCAACGGGGATCTACACCTTATTCTCGCTTTTACAACAACAAACTCCACTTTCTTTTTCTTTATTCGAGCAGGCTGACGCGGCCGGTGCCGGGATTCCCTACCGTGATGAGGAAAACTC‑ACAATTAATGCTGGCCAAGATAGCCAGTTTTTAAAAAACACGAATTTATTgaaagaa > 2:507350/1‑233 (MQ=255) aaaTTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGGGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGAGGCTGGCAAATATTGCAAGGATTGAAAAACCGCCGaatatttttacgaa > 2:957469/1‑225 (MQ=255) aaaGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTCAACG‑TATCTCGAAt > 1:946557/1‑239 (MQ=255) aaaGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGGGATGAGGAAAACTC‑AAAAATAATGCTGGCAAAAATTTCCAGAATTGAAATACCGCCAATTAATTGAAAG‑TATCCCGaaa > 2:1034055/1‑238 (MQ=255) gCGTACAGTTAAGAAAAAATAAAAAAATTTTCTATTGTGGGTGCCGGCCCTACGGGGATTTACCCCTTATCCTCGCTTCTACACCAACAAACTCCCCTTTCTTTTTCTATCTCCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCAATACAGTGATGAGGAAAACTC‑AAAAATGAGGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACa < 2:338869/239‑1 (MQ=255) ggTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTTTCCG‑ATTTCCGAATGGCTCAAAAAGaaa > 2:859052/1‑239 (MQ=255) agtaaCAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATAAGGAACACTC‑AAAAATGATGCTGGCAAATATTGTCAGTATGTAAATAACGCCGATTTATTGTACG‑TATCTCGAAGAGCTCAAAAAACaaa‑aag > 2:981886/1‑239 (MQ=255) aaTAAAAAAATTTGCTATTGTGGGTGCCGGGCTTAGGGGGTTCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGcc < 1:419729/239‑1 (MQ=255) aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTCTTTCTATCTTCGAGCAGGCTGCCGAGGCCGGTGTCGGGCTGCCATACAGTGCTGAGGGAAACTA‑CAAAATGATGCTGGCAAATATTGCCAGTATTGACATACAGCCGGTTTATTGTACG‑TATCTTGAATggaacaaaaatcaaaagaaaagcac > 2:166805/1‑216 (MQ=255) aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAGCTC‑AAAAAGTATGCTTGCAAATGTTCCCAGGATTGGAATACCCCCGACTAATTGAACG‑TAACTCGAATGGGCACAAAAAAaag‑aaaaaaacac > 2:834051/1‑231 (MQ=255) aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑GATCTCGAATGGCAACAAAAACAAA‑AAGAAAGCCa > 2:854710/1‑239 (MQ=255) aTGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTACACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGAGTCGGGATGCCATACAGTGATGAGGCAAAATC‑AAAAATGTTGCTCGCAACAATTGCCAGTATCTATAAAACGCAGATTTATTGTACGCTATC‑CGAATGCCTACaaacacaaaaactaagtc > 2:985523/1‑223 (MQ=255) gAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGCGGCCGGAGTCGGGATGCCATACAGGGATGAGGAAAACTC‑AAAAATGATGCTGGCAAAAATTGCCAGAATTGAAATACCGCCGATTTATTTTACT‑AATCCCGAATGGCAACAAAAGCaaa‑aaaaaaacaaac > 2:965551/1‑229 (MQ=255) aaaaaTTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAAACAACCATCTcc > 1:890824/1‑239 (MQ=255) gCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGaa > 1:698940/1‑238 (MQ=255) ccTACGGGGTTCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCa < 1:997901/197‑1 (MQ=255) ccTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCa > 2:997901/1‑197 (MQ=255) cGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACCGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCACGAATGCACACAAAAACAAA‑TAGAAACCCATCCACACCTT‑AATGGCTGATaaaaaaaaaaatca > 2:970857/1‑235 (MQ=255) cacCTTATTCTCGCTTCTACAGCAACCAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTAGGGATGCCATACAGTGATGAGGAAAACTT‑AAAAATGATGCTGGCTACTATTGTCAGTATTGAACTACCGCCGATTTATTTTACG‑TATCGCAAATAGCTACAGAAGCAAG‑AAGACAGCCAACACCAGCGT‑TCTGGC‑GTTAAAAAAGAAAACTCGCCCGGTctgc > 2:583282/1‑236 (MQ=255) tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGCTGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTCCCAGCATTGAAATACCGCCGATTTATGGTACG‑TATCTCGAAAGGCCACCACAGCAAGAAAGAC‑GCCGATTCCA‑CGTCTAAGGC‑TGTAAAAAAGAAACCTTGCACGAATGACAGttt > 2:272514/1‑239 (MQ=255) tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATTCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCCGCATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGTCTACAAAAGAAAA‑AAGACAGCAATCTACAGCGT‑TATTGC‑ATTAAAAAAGAAACCATTCACGaacaaaagcgt > 2:822447/1‑229 (MQ=255) tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg > 1:24231/1‑110 (MQ=255) tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAatgatg < 2:24231/110‑1 (MQ=255) tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc > 2:578043/1‑124 (MQ=255) tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGc < 1:578043/124‑1 (MQ=255) tATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑CATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTcgattt > 1:664386/1‑234 (MQ=255) ttCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGttttt > 1:449477/1‑239 (MQ=255) tcGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTAc > 1:810371/1‑238 (MQ=255) ccctttCCACACCAAAAACCCCCCCTTTCTATTTTTCTTTGCGAGCAGGCTGAGGAGGCGGGTGGGGGGATGCCATACAGTGATGAGGAAACCTA‑AAAAATGATGCTGGTAAATATTGCAAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTAcc < 2:810371/235‑1 (MQ=255) cTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACcccg > 1:850343/1‑239 (MQ=255) acaaACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACGAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGAACGTCAGTTTTTACCGCGAATTCTGCTgg > 1:57569/1‑239 (MQ=255) tCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCGTCTGGGCGAat > 1:375736/1‑239 (MQ=255) cACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGCAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTCCAAAAGCAAG‑AAGACAGCCATCTCCAACGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGGTTTTACCGCGAATTTTGCTGGGGGacaat > 2:229785/1‑235 (MQ=255) tctatttctatCTTCGAGCAGGCTGACGAGGCCGGTGCCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGAAAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAACAAAACATTGCACGCTCGTAAGTTTTTTCCGCAAATTCTGCGGGTGGAAAATTTCcg > 2:871101/1‑239 (MQ=255) tattcctattccgggccAGGCTACCGGGGCCGGTGTGGGGATTCCATCAAGGGATGAGGAAACCCA‑AAAAATGATGCTGGCAAATATTGCCATTATGGAAATTCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCcgcg < 1:802112/223‑1 (MQ=255) atttctatCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCCCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTACACAAACGTAAGTTTTTACCGCGAATTCTCCTGGGCGAAAATTTCcacg > 2:841406/1‑238 (MQ=255) ctatCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCAtctc > 2:727118/1‑155 (MQ=255) ctatCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCAtctc < 1:727118/155‑1 (MQ=255) tCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAGACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTAAAAAAGCAAG‑AAGACACACATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGCTCGTCAGTTTTTACCGCGCATTCTGCCGGACGGAAATTTCCCCGACAAAttt > 2:1066140/1‑239 (MQ=255) tCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAAAATTGCACGATCGTCAGTTTTTACCCAGCATTCTGCTGGGGCACATTTTCCGGGATAAAttt > 2:802112/1‑239 (MQ=255) tCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAAAAAACTTGCACGATCGTCAGTTTTTACCGCGAATTTTGCTGGGCGAAAAtttaccgaacaaattt > 2:183211/1‑226 (MQ=255) ttCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCACttttt > 1:139004/1‑239 (MQ=255) ggggccggCTGACGAGGCCGGTGTCGGAATGCCAAAAAGTGATGAGGAAAACTA‑AAAAATGATGCTGGCAAATTTTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTAc < 1:859052/233‑1 (MQ=255) ggagaAGGCGGACGGGGCCGGTGGGGGGATGCCATCAAGTGAGGATGAAACCCA‑AAAAATGATGCGGGCAAATATTGCCAGTATTGAAATCCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTAc < 1:841406/238‑1 (MQ=255) cgggCTGTCGAGCGCGTTGTCGGGATGCCATACAGGGAGGAGGAAGACTA‑AAAAATGATGCGGGCAAATATTGCCGGTATGGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGAc < 1:1066140/236‑1 (MQ=255) gCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGGGAATATTTCCGCGATCAATTTTTACGACtagt > 1:190354/1‑239 (MQ=255) gttaCGGGGCCGGTTGCGGGATCCCAAAAAGGAGAGGGGAAACCTA‑AAAAATGATGCTGGAAAATATGGCCATTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACtag < 1:1034055/234‑1 (MQ=255) cTGACGAGGGCGGGGTGGGGTTGTCAAAAAGTGTAGAGAAAAACCC‑AAAAATGAGTGGGGAAAAGTTTGCCAGGAATGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACta < 2:807274/236‑1 (MQ=255) ataaCGGGGCCGGTTGCGGGATGCAAGAAAGTAAAGAGAAAACCCC‑AAAAATGGTGTCGGCAAATATTGCCAGTATTAAAATCCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACtag < 1:323788/234‑1 (MQ=255) ccGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGc > 1:318864/1‑238 (MQ=255) tggggaacccATAAAGTTATGAGAAAAACTA‑AAAAAGGTGTGGGGCAAATATTGCCAGTATTAAAACTCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAg < 2:698940/231‑1 (MQ=255) ccATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTCCTGGGCGAATATTTCCGCGATCAATTTTTACGATTAGTAGACCAGGCACGACAGCAAAAAtt > 1:758192/1‑239 (MQ=255) aaaggataaGAAAATCTA‑AAAAATGTTCCTGGAAATTATGCCCTTTATTGAACACCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAg < 2:250057/235‑1 (MQ=255) tgatgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACa > 1:671839/1‑87 (MQ=255) tgatgaGGAAAACTC‑AAAAATGATGCTGGAAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACa < 2:671839/87‑1 (MQ=255) ggatgaGGAAACCTA‑AAAAATGATGCTGGCAATTATTGCCATGATTGAAATACCGTCGATTTATTGCACG‑TATCTAGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTgg < 1:826305/238‑1 (MQ=255) tatgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTgg < 1:229785/237‑1 (MQ=255) gaagaGGAAAACCA‑AAAAAGGAGTCTGAAAAATATGGCCAGTATTGAAATCCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTgg < 1:1085394/235‑1 (MQ=255) gttgagAAAACACAAAAAATTATGGAGGAAAATTTTGCAAGTTTTAAAAACCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGGAAG‑AAGACAGCCATCCCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGc < 2:318864/234‑1 (MQ=255) atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGCCCAGGCACGACGGCAAAAATTTGCAGTGGcg > 1:123640/1‑238 (MQ=255) atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAggg > 1:957394/1‑234 (MQ=255) atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTg > 1:926281/1‑236 (MQ=255) atgaGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAA‑AAGACACCCATCTCCAGCGT‑TATGTC‑GTTAACAAAGAAACCTTGCACGGTAGTCAGGTTTTACGGCGAATTTTGCTTTGGAGATATTTCCTAAACAAATTTTTACGACTATAAGACCAGGCACGACGGCAAAAGTTTgaaagggcg > 2:826305/1‑231 (MQ=255) aGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATAccg > 2:1094563/1‑50 (MQ=255) aGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGtt > 1:659723/1‑239 (MQ=255) aGGAAAACTC‑AAAAAGGATGCTGGCAAATATTGCCAGTATTGAAATAccg < 1:1094563/50‑1 (MQ=255) aaaaCCA‑AAAAATGAAGCTGGAAAATATTGCAAAGATTGAAATTCCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTa < 1:483707/238‑1 (MQ=255) cTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTa > 1:250057/1‑234 (MQ=255) cTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTATGaa > 1:712665/1‑238 (MQ=255) | TGTCTGAAATTTCTCAAATTCTAAAAATCTCAACCAAACTTATCTGATAACAC‑TAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTC‑AAAAATGATGCTGGCAAATATTGCCAGTATTGAAATACCGCCGATTTATTGTACG‑TATCTCGAATGGCTACAAAAGCAAG‑AAGACAGCCATCTCCAGCGT‑TATGGC‑GTTAAAAAAGAAACCTTGCACGATCGTCAGTTTTTACCGCGAATTCTGCTGGGCGAATATTTCCGCGATCAATTTTTACGACTAGTAGACCAGGCACGACAGCAAAAATTTGCAGTGGCTGTTTATGAA > NC_000913/1747045‑1747514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |