| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,098,166 | T→A | 11.9% | I46F (ATT→TTT) | wzzB ← | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,098,166 | 0 | T | A | 11.9% | 207.3 / 3.2 | 74 | I46F (ATT→TTT) | wzzB | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Reads supporting (aligned to +/- strand): ref base T (42/21); new base A (3/7); total (45/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.76e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATA > NC_000913/2097932‑2098385 | aaGGTTCGATTGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑c < 2:255150/238‑1 (MQ=255)aaGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑c > 1:255150/1‑238 (MQ=255)aaGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGGGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACG‑GCCAAAAAACA‑AAAAG‑cc > 2:457413/1‑239 (MQ=255) ggTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAg > 1:649695/1‑239 (MQ=255) tcaaTGGTAAGTCTTTCTCGTTCTTCTTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTA‑AAGCGACCAATTAACTTCTCCTGCAAATCCGAAACTTTCGGTGCAGGCTATCCTTGGATAACATTCATAGCATTGTTTTAGCCAGCCATTTGCCCCCCGGCGGCCTGCGTGAAAACTTCTAGTTG‑CGTACACTTTTCCTTCGCTACT‑GCCAAATCTCC‑AAAAG‑CCAcgga > 2:851078/4‑238 (MQ=255) tCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATACAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTAACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAA‑CCAGGGc > 1:393124/1‑239 (MQ=255) aaGTTTTTCTCGTTCTTCCTGATTCTCCAGCGCTTTTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGCCTGAGTGATAATTGCT‑TTTGACTTCATTTTTCCCTACGCTACT‑CGCAAAAATCA‑AAAAG‑c > 2:142571/1‑225 (MQ=255) ttttcGTTCTTCCTTATTACCCAGCTTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGa < 2:911404/236‑1 (MQ=255) tttcggTTTTTCCTGGTTATCCCGGTTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCGGCAAAGCCGAAACTTTCGGTGCAGCCTGACCAGAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTGCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGa < 2:807811/234‑1 (MQ=255) ttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATTCTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGa < 2:191154/239‑1 (MQ=255) ttCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTAATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CAAGGGC‑AATAGCCAAACTGa > 1:247657/1‑239 (MQ=255) tATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTc > 1:676089/1‑239 (MQ=255) gTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTTTCATCTTgc > 1:756683/1‑238 (MQ=255) gTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCATTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCAACTTgcc > 1:472974/1‑239 (MQ=255) gaaTGCAGAGAAGGCAGAACAG‑AAGGCACCAGTTAACGTCGCATGAAAGTCCAATGCTTGCGTGGAAGCCTAACCAAAGATAACATGCATGTCATTGTTAGACACAGAAATTGGCCCCACGGCGGGCTAAGTGAGATTTGCT‑GTGGACGTCCATTTCTCCTGCGTCACT‑ACCAAATCACC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATAATGATTGTCTTTTGcccacgccac < 1:41433/237‑1 (MQ=255) aatgcaagaaaGGCA‑AACTGAAAGCCAACAATAAACGTCCCCTGAAAATCGTATACTTTGGGTGCAGCCTGCCCATAGAAAACATTCATGGCATTGTTATGGCCAGCATTTTGCCCCACGTCGGGCTGAGTAATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCA‑AATAG‑CCAGGGC‑AATAGCCACAATGACGAAAATGATGATTGTCATCTTGCCACGCCACaa < 1:471856/230‑1 (MQ=255) tGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCcaca > 1:1086989/1‑236 (MQ=255) tGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:959614/1‑237 (MQ=255) gaAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATTACGGAAATGATAATTGTCATCTTGCCACCCCAAAAATGCAcaa > 2:8656/1‑237 (MQ=255) gaAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTa > 1:1077938/1‑239 (MQ=255) gaAGGCAGAACTG‑AAGCCACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGCGTGATAATTTCT‑GTTGACGTCCATTTCTCCTTCCCTACG‑GCCAAATATCC‑AATAG‑CCCGGTC‑AATAGCCACAATGACGGAAATGATGATTTCCATTTTccaacgccaaacccacccaa > 2:884425/1‑228 (MQ=255) atcGACAAATTAGCGTCTCCGGCAAATCCGATCCTTTCGGGTCAGCCTGACAATAGATAACATTCATGGATTGGTTAAACCCAGCATTTGCCCCCACTGCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCCCCTTCGCTACT‑GCCAAATATCC‑AAAAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatcaaa < 1:216140/237‑1 (MQ=255) aGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGAGGATTGCCTTCTTTCCCCGACCCAACACAACTAGtaaa‑caaacaaaa > 2:747732/1‑238 (MQ=255) aCCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATACCATTCATGGCATTGTTCTAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGTGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACTCCACAACTGCACTAGTaaatcaatcaaatcaa > 1:424351/1‑239 (MQ=255) aCCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGCCATCTTGCCACGCCCCAACTGCACTAGTaaatcaatcaaataaa > 1:162296/1‑239 (MQ=255) ccAATTAACGTTTCCTGAAAATCCGATTTTTGCGGTGCAGCCTACCCAAAGAAAACATTCATGGTTTTGTTAAAGCCAGAAATTTGCCCCAGGTCGGGCCGGGTTATAATTGGT‑GTGGACGTCCATTTCTCCTCCGCTACT‑GCAAAATATCC‑AATAG‑CAAGGGC‑AATAGCCACAATGACGGAAATTATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatcaaatcaat < 1:140815/239‑1 (MQ=255) aaaCCCGAGACTTGCGGGTCAGCCTGACCATAGAAAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCGGAGTTATAATGGCT‑GTTGACGTCCTTTTCTCCTTCGCTACT‑GCAAAATATCC‑AATAC‑CCAGGGC‑AATAGCCAAAATGACGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGtt < 1:624360/239‑1 (MQ=255) ttttggggTGCGGCCTGACCATAGATAACTTTCTGTGCTTTGTTAGAGCCAGCAATGTGCCCCCTGGCGGGTGTAGGAATAATTGCT‑GTTGCCGCCCATTTCTCCTTCGCTTCT‑GCAAAATATCC‑AATAG‑CCGGGGA‑AATAGCCACAATGACGGAAATGATGATTTCCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGa < 2:89309/233‑1 (MQ=255) ggTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCa > 1:799976/1‑184 (MQ=255) cacccggcccaaaaaTAACTTTCAGGGCATTGTTAAAGCCAGCAATTTCCCCCACGGTGGGTTGAGGAATAATCTCT‑GTTGACGCCAATTTCCCCTTCGCTTCG‑GCCAAATTCCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACattatt < 1:187287/224‑1 (MQ=255) tttataagacaccgcttttgtGGTATTTTTAGACCCAGCATTTTCCCCCGGTTGGGGCAGAGTAATAAGTGCT‑GTTGACGTCCATTCCCCCTCCGCAACG‑CCAAAATACCC‑AAAAG‑CCGGGCC‑AAAAGCCACAATGACTGAAATGATGATTGTCATCTGCCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTAtttt < 2:344013/219‑1 (MQ=255) ttgacatcagacacgtttCAGGGCATTTTTACGCGCAGAAATTTGCCCCACGCCGGGCTGAGTAATAATTGGT‑GTCAGAGTCCATTTCGTCTGCGCTCCT‑CTCAAATATCC‑AATAG‑CCAGGAC‑AATAGCCAAAGTGACGGAAATGATTATTTTCATCTGGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTAtttt < 1:1006833/223‑1 (MQ=255) cATAGTTAACTTTCGTGGATTTGTTAAAGCCGACAATTGTCCCCACGTCGGACTGGTTGATATTTGCT‑GTTGACGCCCATTTCACCTTCGCTCCT‑GCCAAATATCC‑AATGG‑CCAGGCA‑AATAGCCAAAATGAAGAAAATGATGATTGTCATCTTGCCCCGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTAct < 1:949185/239‑1 (MQ=255) aaaaTAACATTCATGGCTTTTTAATAGCCAGAAATTCCCCCCGGGTCGGGCTGAGTGATAATTGTT‑GTTGACTTCCATTTCCCCGTGGCTATT‑GCCAAATATCC‑AATAG‑CCAGGGA‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTActct < 1:8656/236‑1 (MQ=255) aCATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTcttcat > 1:623120/1‑239 (MQ=255) aTGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCt > 1:539697/1‑239 (MQ=255) ggCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCAt > 2:334544/1‑135 (MQ=255) ggCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCAt < 1:334544/135‑1 (MQ=255) ttGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCtcat > 1:344013/1‑224 (MQ=255) tGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTc > 1:434441/1‑178 (MQ=255) gCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAACTCAATCTGTTCCGGGCCATGGTTTTGCCCAGACCAATTATTATTTTCACCTCTCTTCATTACCCTAAAGCACGGAAAtt > 2:591408/1‑239 (MQ=255) gCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTAACGGAAAtt > 1:532795/1‑239 (MQ=255) gCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTAACGGAAAtt > 2:712922/1‑239 (MQ=255) aGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTcc > 1:978601/1‑239 (MQ=255) cAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCCCAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCCGGGTTTGTCCCAGAAACATTATAATTTTTTACTCTCATCATTACCCTAACTGCAGGAAATTTCaaa > 2:288008/1‑239 (MQ=255) cAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCaa > 1:555257/1‑239 (MQ=255) tggcccccgggcGGGCTGGGGTATAATTGCT‑TTTGACGTCCATTTCTCCTTCCTTACG‑GCCAAAT‑TCC‑AAAAGCCCAGGGA‑AATAGCCAAAATGACGGAAATGATGATTTTCATTTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGt < 1:591408/226‑1 (MQ=255) gcccccggcggggctggtgtaTAATTGCT‑GTTGACGTCCATTTCTCCTGCGCTACG‑GCCAAATACCC‑AAAAC‑CCAGGGA‑AATAGCCAAAAGGACGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGG‑TTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCa < 1:716687/219‑1 (MQ=255) ccccccGTCGGGCTGATTTATATTTGCT‑GGTGACGTCCTTTCCTCCTTCGCTACG‑GCCAATTACCA‑AATAG‑CCAGGGA‑AATCGCCACAATGACGGAAATGAGTATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCa < 2:1077938/239‑1 (MQ=255) aCGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAAGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGCCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCCTTACCCTAACTGACGGAAATTTCCaaacccccaaagt > 2:397838/1‑228 (MQ=255) ggCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTTACGGAAATTTCAAAGTCCCCAAAGTTTATCg > 2:28330/1‑239 (MQ=255) ctggtgaatatTTGTT‑GTGCACGTCCATTTC‑CCTTTCCTACTGGCAAAATTCCC‑AATAG‑CCAGGGC‑AATAGCCAAAAGGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGa < 1:457413/231‑1 (MQ=255) atttGCT‑GTTGACGCCAATTTCCCTTTCGCTACT‑GCAAAATTGCA‑AATAG‑CCAGGGC‑AATACCCACAATGACGGAAATGTTTATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGt < 1:462514/237‑1 (MQ=255) aaTTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGt > 1:318311/1‑239 (MQ=255) aattcgttttGACTTCCATTCCCCCTTCGCGTCT‑GCAAAATACCC‑AATAG‑CCAGGGA‑AATAGCCAAAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGt < 1:57065/231‑1 (MQ=255) tGCT‑GTTGACGTCCTTTTCCACTTCGCTACT‑GCAAATTTTCA‑AAAGG‑CCAGGCA‑AATGACCACAATGACGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGaa < 1:747732/239‑1 (MQ=255) tttttttgcgcctctttttcccttccttACT‑GACAAATATCC‑AATAG‑CAGGGGA‑AATAACCAAAATGAAGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGaa < 2:1086989/219‑1 (MQ=255) gCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaat > 1:959868/1‑119 (MQ=255) gCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTCCTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTACCGAAAAACCTccggaaa > 2:547825/1‑233 (MQ=255) gCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAAt > 1:72788/1‑239 (MQ=255) tgccGTCCTGTTCCCCTCCGCTAC‑‑GCCCAATATCCAAATAG‑CCGGGCA‑AATGGCCAAATTGACGGAAATGATATTTGTCATCTGGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCta < 1:884425/235‑1 (MQ=255) gACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACattatt > 1:837479/1‑158 (MQ=255) gACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGCCATgg > 1:38673/1‑138 (MQ=255) gTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACatta > 2:827628/1‑153 (MQ=255) gTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AAGAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACatta < 1:827628/153‑1 (MQ=255) cATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATaa > 1:179898/1‑239 (MQ=255) aatttcccctgccttaaggcAAAAATCCAAAAAG‑CCGGGGA‑AAAAGCCACAATGAGGAAAATGATGATTGCCATTGTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTGCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATaa < 1:989088/220‑1 (MQ=255) ctcCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGAt > 1:575898/1‑239 (MQ=255) cGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGa > 1:963293/1‑225 (MQ=255) gCTACT‑ACAAAAT‑TTC‑AAAAA‑CCAGGGCAAATAGCCAAAATAAAGAAAATTGTGTTTGCCATCTGGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAaata < 2:318311/239‑1 (MQ=255) aaaTATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTc > 2:596606/1‑171 (MQ=255) aaaTATCC‑AATAG‑CCAGGGA‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTc < 1:596606/171‑1 (MQ=255) tatCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGtt > 1:412883/1‑183 (MQ=255) aaTAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAggc > 1:813272/1‑206 (MQ=255) | AAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTG‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCT‑GTTGACGTCCATTTCTCCTTCGCTACT‑GCCAAATATCC‑AATAG‑CCAGGGC‑AATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATA > NC_000913/2097932‑2098385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |