| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,120,818 | A→G | 27.5% | L246P (CTC→CCC) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,120,818 | 0 | A | G | 27.5% | 109.4 / 13.1 | 63 | L246P (CTC→CCC) | wcaJ | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| Reads supporting (aligned to +/- strand): ref base A (10/34); new base G (15/3); total (26/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.41e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CACACTTTGATCGGCTTGCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCCCACCACTTCAAACCCTAACCA > NC_000913/2120581‑2121053 | cgcatttggacgggCTTGCCATCCCTCCCGTAGGGGTGCGAGCGGAAAAACACCGGCCCTGGTGAACTGAGTTTCACCGCAAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGgag < 1:510250/227‑1 (MQ=255) catcttgggacgtcTTGCCAGTCATGCCGTAGCGGTTCTGGCGGAAAATACCCGGCCCTGACGAACTGGGTTTCCCCGCCAGAGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGgaga < 1:589306/226‑1 (MQ=255) aTCGGCTTGCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGGAAGCGGCGTGTTGTAAAGCGGCACCACCGGGACGCCGTTCCTCTCTTCGA‑GGGGTGGATGGGGAATGTTgga > 1:934668/1‑237 (MQ=255) gCTTGCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAACGGCGTGTCGTAAAGCGGACCCCCCGGTACGCCGTTCATTTCTTCCA‑GGCGGGGATGGGGAATGTTGAAGGTa > 1:947276/1‑239 (MQ=255) ttGCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAACGGCGTGTCGTAAAGGGGCCCCACCGGTACGCCGTTCATCTCTTCGA‑GGCGGGAATGGGGAATGTTGAAAGGaaa > 1:275251/1‑239 (MQ=255) gCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGTCAGCACAATGTCTTCCGGACGTTTGAGCAGGCGGTTAAACCCGGAAAGCGGGGGAGCGTAAAGCGGCACCCCCGGTACGGCGCTCACCTCCTCGAGGGCGCGAA‑GGAGAAGGCTGCAGGGaaaaa > 2:661488/1‑237 (MQ=255) atGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGGGTCGTAAAGCGGCACCACCGGTACGCCGGTCATCTCTTCGA‑GGCGTGAATGGGGAATGTTGAAGGGAAAAACGTCggg > 1:247344/1‑239 (MQ=255) tGCCGTAGCGGGTCGGGCGGAAAATACCCGGCCTTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCgggg < 1:1083219/239‑1 (MQ=255) ggcggtggCGAGTCTGGCGGAAAATACCCGGCCCGGGTAAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCgggg < 1:863602/232‑1 (MQ=255) cGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAACGGCGTGTCGTAAAGCGGCCCCACCGGTACGCCGTTCATCCCTTCCA‑GGGGGGAGTGGGGAATGTTTAAGGGAAAGACCTCGGGGGTc > 1:407794/1‑239 (MQ=255) tAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAAACCCGGAAAGCGGCGTGTCGGAAAACGGCCCCACCGGTACGCCGTTCATCTCTTCCA‑GGCGTGAATGGGGAATTGTTAAGGGAAAGACGGCGGGGGTcag > 1:1087918/1‑239 (MQ=255) gaggcaGTCTGGGCGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATcag < 1:399014/234‑1 (MQ=255) gtgTCGGGGGGAAAATACCCCGCCCGGGGGAACTGGTTTTACCCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCagcagc < 2:247344/237‑1 (MQ=255) ttcaggCGGAAATAAACCGGCCCTGGTGAATGGAGTTTCCCCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAgcagca < 1:757851/234‑1 (MQ=255) tCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGGGTCGGAAAGGTGCACCACCGGTACGCCGTTCATCTCTTCGC‑GGCGGGAATGGGGAATGTTGAAGGTAAAGACGTCGGGGGTCaacagccac > 2:855197/1‑236 (MQ=255) tCTGGCGAAAAATACCCGGCCCTGGTGACCTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCAc < 1:165824/238‑1 (MQ=255) ggCGAAAAATACCCGGCCCTGGTAAACTGGGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGaa < 1:715521/239‑1 (MQ=255) gTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGGATGGGGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGGGGGGTCCGCCCGTTGa > 1:573972/1‑239 (MQ=255) accggttttCCCCGCCAGCGCAATCCAGCAACGCCCCGGGGAGATCAGGAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGa < 2:1087918/233‑1 (MQ=255) cTGAGTTCCACCGCCAGCGCAATACAGCACAGCCCCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGAc < 1:429265/239‑1 (MQ=255) gccAATACCGACCAACACCGGGGGGGGCCGGAGCAGATAAGGCGCCGCCAGCAAAATGGCATCCTCGCGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGGGTGCCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGGCCAGTTTTTTCACTcgcg < 2:395733/237‑1 (MQ=255) agcacCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGGA‑AAGGGGGGGGCCGCCCGTTGTTGGGCCAGGTTTTTCCCCCGCGCGCCGCCGCCCAt > 1:941945/1‑239 (MQ=255) cacCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGGAAGCGGCGTGTCGTAAAGCGGCACCACCGGGACGCCGTTCATCCCTTCGA‑GGCGTGAATGGCGAATGTTTACGGGAAAAAGGTCGGGGGTCAGAGGGACCGGA‑CAGGGGGGTTTCGCCAGTTGGTTGGCCAGTTTTTTTACTcccggccccggccccactt > 2:68273/1‑224 (MQ=255) cacCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGgag > 1:701813/1‑141 (MQ=255) cacCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGgag < 2:701813/141‑1 (MQ=255) cacCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGGGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑AAGGGGGGGTCCGCCAGTTGATGGACCAGtttttttccccgccccccgccggccattt > 1:955612/1‑216 (MQ=255) cacCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGGGTCCGCCCGTTGATGGACCAGGTTTTTTCCTCGCGCGCGGTGGCACAttt > 1:588820/1‑239 (MQ=255) cacCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGCGTCGTAAAGCGGCACCACCGGTAAGCCGGTCATCTCTTCGA‑GGCGTGAATGGGGAATGTTGAAGGGACAGACGTCGGGGATCAGCACAACCGAA‑AAGAGGGTGTCCGCCAGTGGGGGGACAAGTTTTTTCACCAGCGCGCCGGCGcacaatg > 2:177755/1‑236 (MQ=255) cccGGGGAGATCAGCCGCAAAATAAGCGGCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGGAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTg < 2:559389/238‑1 (MQ=255) ccGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTg < 1:855197/238‑1 (MQ=255) gggggcgtCAGCAGCAGAAAAAGGCGCGCCAGGCCAAGTTCTTCCGCACGTTTGGGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCAt < 2:1072072/232‑1 (MQ=255) gggAGATCAGCAGCAGCATAAGCGTCGCCAGCACAATATCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGGAAGCGGCGTGGCGTAAAGGGGCACCACCGGTACGGCGGTCCACTCTTCGT‑GGCGGGAAAGGGAGATGTTTACGGGAAAGACCGCCGGGGTCCACAGCCCCCAACCAGGGGGT‑TCCGCCAGTGGGCGGGCCCGTGTTTTCCCTCCCCCGcccgcggcaaatttg > 2:60296/1‑223 (MQ=255) gggAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGGGTCGTAAAGCGGCACCACCGGTACGCCCTTCCTCTCTTCGA‑GGCGTGAATTGGGAAAGGTGCAGGGAAAGACGTCGGGGGTAAGCGGCCCCGAA‑CAGGGGGGGTCCGCCACTTTGTTGAGAAGGGTTTTTACTCGCccgccgccgaccaagtgcgcc > 2:507305/1‑227 (MQ=255) ggtgttccccaggcagatgagggTCGCCCGCACAATGTTTTCCGCCCGTTTGCGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAACGCGGCTCCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATcg < 2:455973/217‑1 (MQ=255) ggAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATc < 1:292315/238‑1 (MQ=255) gagaTCCGCAGCAAAATAAGCCTCCCCAGCACAATGTCTTCCGCACGTTTGAGCAGGGGGTTAACCCCGGAAAGGGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATcg < 2:955612/238‑1 (MQ=255) gagaTCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATcg < 1:316474/238‑1 (MQ=255) aTCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCAc > 1:410012/1‑167 (MQ=255) aTCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCAc < 2:410012/167‑1 (MQ=255) ccacaaaaTAAGCTTCCCCAGCACAATGTTTTCCGCACGTTTGGGCTGGCGGTGAACCCCGGAAAGGGGCGTGTCGTAAAGCGGCCCCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGGCGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGa < 2:931371/233‑1 (MQ=255) gcagAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGAGGCGTGTCGTAAAGCGGGCCCACCGGTACGTCCTTCCTCTCTTTGA‑GGCGTGAATGGGGAATGTTGAAGGGCAAGACGCCGGGGATCCGCCGCGCCCAA‑CAGGGGGGGTTCGCCACCTGAGTGACCAGATTTTTTTCCCTCGCGCCCGCGCACCCTTGCATccccctaaaaaag > 2:517542/1‑227 (MQ=255) ggaaacagcgtccccgcgacaATGGCTTCCGCAGGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTGCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGAc < 2:588820/218‑1 (MQ=255) tCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGGGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGGTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGGTTTAGACG‑TTTTGaag > 1:931371/1‑234 (MQ=255) gCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCTCGCCGTCGCACATTTGCATCGCGATATAGCCG‑TTATGAATCtttc > 1:198788/1‑236 (MQ=255) tttCCGCCCGTTTGAGCAGGGCGTTAACCCCGGAAAGGGGCGGTTCGTAAAGCGGCCCCTCCGGTACGCCGTTCATCTGTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTc < 2:275251/237‑1 (MQ=255) cccGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCCCCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGAcc < 1:68273/237‑1 (MQ=255) cggtggTTAACCCGGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCCCCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCa < 1:517542/234‑1 (MQ=255) gCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGGACGCCGTTCATCTCTTCGA‑GGCGTGAATGGGGAATGTTGAAGGTAAAGACGGCGGGGATCAGCAGCACCGAA‑CAGGGGGGGTCCGCCCGTTGATGGGCCAGTTTTTTCACCCGCGCGCCGTCCCCACTTTGCATCGCGCAATAAACGCTTTTAAATTTTCCCCCCTTCcgctcccccccccccctggtgtggg > 2:788789/1‑217 (MQ=255) ccctgagagccgcgggtctttAAAGGGGCACGCCCGTGATGCAGTTCACTCCTTCCG‑GGCGGGACTGGAGAATTGTGAAGGTAAAGGCGTCGGGGATCAGCAGCACCGAA‑CAGGTGTTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACACTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGcc < 2:410019/219‑1 (MQ=255) ccccGGAAAGCGGGGTTTCGTAAAGCGGCACCACGGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGcc < 2:407794/239‑1 (MQ=255) ccccGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTTAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGcc < 1:788789/239‑1 (MQ=255) gAAAGCGGCGTGTCGTAAAGCGTCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGCATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGCA‑CAGGTGGGTTCCGCCAGTTGGTGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCCCTTTCGCGTCCTCCACCAACTGTTCCAAGTTAACCGCCCAGTc > 2:518093/1‑239 (MQ=255) ttaaggggcccccgcGGTTCGCCGTTCATCTTTTGGG‑GGCGTGAATGGGGAATGGTGAAGGTAAAGACGTCGGGGGTCAGCAGCCCCGAA‑CAGGGGGTGTCCGCCAGGTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACgccgcc < 2:573972/225‑1 (MQ=255) aaaGCGGCACCCCCGGTACGCCGTTCATCTCTTCGA‑GCCGTGAATGGAAAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACgccgcc < 1:644095/238‑1 (MQ=255) aaaGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACgccgcc < 1:887180/238‑1 (MQ=255) cGGTACTCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGt < 1:726797/239‑1 (MQ=255) ccGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCCCGTCCTCGACCACCTGTTGCAGGTTACCCCCCCAGTCGTTCGAAACCCCCCCCGCTTTCGGGCGGTGGTaac > 2:254285/1‑237 (MQ=255) tctcttTTCGG‑GGCGTTATGGGGAAATGTTTAAGGGAAAGGCGTCGGGGATCAGCAGCCCCGAA‑CGGGTGGGGCCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCcca < 2:934668/237‑1 (MQ=255) cccttttCGC‑GGCGGGAATGGAGAATGTTGAAGGGAAAGCCGTCGGGGTTCCGGACCCCCGAA‑CAGGGGGGTGCCGCCAGTTGATGGACCCTTTTTTTCCCTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCccac < 2:941945/234‑1 (MQ=255) actcgTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCccacc < 1:254285/238‑1 (MQ=255) ttCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCTTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGCCGTTCGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCCCACCACtt > 1:337331/1‑239 (MQ=255) cGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGCTATAGACG‑TTATGAATCTTGCCCGCTTTCCGGTCCTCGACCCGCGGTTGCAGGTTACCCGCCCAGTCGTTAGAAACCCCGCCCCGTTTCGGGTGGAGGTAAACGCCACCCACTCCa > 2:449307/1‑239 (MQ=255) cGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGCCCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCCCCCGGCTTCGGGTGGGGGTAAAccccccccccccca > 2:356716/1‑233 (MQ=255) gA‑GGGGTGAATGGAGAATGGTGAAGGTAAAGACGGCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCCCACCACTTCaa < 1:356716/239‑1 (MQ=255) ggggCGTGAATGGATAATGTTGAAGGTAAAGGCGGCGGGGATCAGCAGCCCCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTCTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCCCACCACTTCaa < 1:556639/237‑1 (MQ=255) tGGGGAATGGTTAAGGTAAAGGCGGCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCTGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCCCACCACTTCAAACCCTAACCa < 1:456335/239‑1 (MQ=255) tGGAGATGGTTGAAGGTAAAGCCGTCGGGGATCAGCAGCCCCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCCCACCACTTCAAACCCTAACCa < 1:147043/239‑1 (MQ=255) | CACACTTTGATCGGCTTGCCATCCATGCCGTAGCGAGTCTGGCGGAAAATAACCGGCCCTGGTGAACTGAGTTTCACCGCCAGCGCAATACAGCACAGCACCGGGGAGATCAGCAGCAGAATAAGCGTCGCCAGCACAATGTCTTCCGCACGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCGTAAAGCGGCACCACCGGTACGCCGTTCATCTCTTCGA‑GGCGTGAATGGAGAATGTTGAAGGTAAAGACGTCGGGGATCAGCAGCACCGAA‑CAGGTGGTGTCCGCCAGTTGATGGACCAGTTTTTTCACTCGCGCGCCGTCGCACATTTGCATCGCGATATAGACG‑TTATGAATCTTGCCCGCTTTCGCGTCCTCGACCAGCTGTTGCAGGTTACCCGCCCAGTCGTTAGAAACGCCGCCCGGTTTCGGGTCGTGGTAAACGCCCACCACTTCAAACCCTAACCA > NC_000913/2120581‑2121053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |