| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,718,257 | A→C | 14.6% | S90R (AGT→AGG) | yfiF ← | putative methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,718,257 | 0 | A | C | 14.6% | 153.4 / 4.0 | 65 | S90R (AGT→AGG) | yfiF | putative methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (30/23); new base C (5/7); total (35/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTCCGTGCCTGACGCTTTTGTCAATTCCGCTTCATCCACCACATGGTACGCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCGGACATACATCACTTTG > NC_000913/2718020‑2718491 | ttCCTTGCCTTGCGCTTTTTTCAATTCCGCTTCATCCCCCACATGGTACGCTTTGCTGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCAc < 2:933443/239‑1 (MQ=255) tGCCTGACGCTTTTGTCAATTCCGCTTCATCCACCACATGGTACGCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCCGGTTTCTTCCGCACGCTGACGACAGCAA‑ACCTCCCGCTCACAAAAAACTTTACCAccact > 2:967747/1‑234 (MQ=255) gCCTGACGCTTTTGTCAATTCCGCTTCATCCACCACATGGTACGCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATg < 1:678619/238‑1 (MQ=255) gACGCTTTTGTCAATTCCGCTTCATCCACCACATGGTACGCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACCCTGACGCC‑CCCACACTTCCGGTCCAATAAAACATTTACCACGGAAGcgcac > 2:684615/1‑235 (MQ=255) ttttGTCCATTCCCCTTCATCCACCACATGGTACGGTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACCCTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGa < 1:751242/238‑1 (MQ=255) ttttGTCAATTCCGCTTCATCCACCACATGGTACGGTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAACCGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGAt < 1:926463/239‑1 (MQ=255) aTTCCGCTTCATCCACCACATGGTACGCTTTGCGGTCTGCTCCCATCCAGCGCCACGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCATGCACGGACAATCTCTTCCGGACGGCTCTGGCACAGTGCCTGACACGCCTATTCGCCGCAGACGAGGGTTTCTTCTGCACGCTGACGAA‑GCAACACTTCCGGGTCAATATAACTTTTTCACCCGAAGCCACCggttatggacttt > 2:1070462/1‑227 (MQ=255) ggTACGCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑CCAACCCTTCCGGATCAATAAAACTTTTACCCCTGATGCCACCCGGGTCGGCCTTTTCCGGCgcaccactcaccgg > 2:129133/1‑225 (MQ=255) tACGCTTTGCGGTTTGCTGCCATCCAGCGAAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑gcg < 1:927699/238‑1 (MQ=255) gCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCCCGCTGACGCC‑GCAACACTTCCGGATCAATAAAACTTTTACAACTCATGCCACCGTGAACGGCCTTTTCCGGCGTCCCATCACCCG‑Ccgcgcg > 1:1065765/1‑239 (MQ=255) gCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGCCCTTTTCCGGCGTCTCATCACCCG‑Gcgcgcg > 1:49771/1‑239 (MQ=255) ttGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGCCATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGAACCCTGACGCC‑CAAACACTTCGGTATCAATAAAACTTTTACCCCCGTAGCCACCGTGACAGCCCTTTTCCGGCTCGTCACAACCCG‑ACGCTCgggc > 2:648912/1‑238 (MQ=255) ttGCGGTTTGCGGCCATCCAGCGCAAAGCTACTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGCCATGCATTTTAGCCGTAGACGCGGGGTTCTTCCGCACGCTGACGCC‑GCAACACGTCAGGGTCAATAAAACGTTTACCCCTGATGCCACCGTTACCCGCCTTTTGCGGCTACTCCTTACCCC‑GGGCACGGG‑a > 2:1066815/1‑239 (MQ=255) tGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCgggga > 1:880769/1‑237 (MQ=255) gctgcCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCCCGCTGACGCC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCCCCTCACCCG‑GCCCGCGGG‑AAACCTTgg > 2:760000/1‑237 (MQ=255) ctgcCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTACGCCCGCTGACGCC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGCTCCGCCTTTTCCGGCGCCCCATCACACC‑CCCCCCGGG‑AAACCGGgcg > 2:702948/1‑238 (MQ=255) tgcCATCCAGCCGAAAGGTTATTTAAAGCGCGGCGTTACACCCTGGATAAACCAGGCGCGAACAATCGCGTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATGTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTgcgc < 1:120991/238‑1 (MQ=255) ttcttTAAAACGCGGGGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTTCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACt < 1:702948/239‑1 (MQ=255) ttAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCg < 1:681705/239‑1 (MQ=255) aaCGCGGCTTTACCCCTGGGATAACCCAGGCCGGAAACATCGCTTCCGGACGGCTTTGGAAAAGTCCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCCCGCTGACGAC‑GCAACACTGCCGGATCAATAAACCTTTTACCACTGATGCCGCCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCa < 2:880769/239‑1 (MQ=255) aaCGCGGCGTTACCCTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCa < 1:614710/239‑1 (MQ=255) aCGGGGCGTTCCCCTTTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCAc < 1:252680/239‑1 (MQ=255) aCGCGGCGTTACCCTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCAc < 1:967747/239‑1 (MQ=255) ggcgTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCCCGCTGACGAC‑GCACCACTTCCGGATCAATAAAATTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGCCCCATTACCCG‑GCGCGCGGG‑AAACCGTCCCCCCCTGCGAACCCTCCCCCTTACggcccggggg > 2:614710/1‑231 (MQ=255) acacTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGAct < 1:133632/239‑1 (MQ=255) tctGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCCCTTGCGGTCACGGGGCTGACTCTGt > 1:278677/1‑239 (MQ=255) tGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGCTGCCACCGGGATCGGCCTTTTCCGGCGCCTATTTACCCGTGCG‑GCGGGAAAACCGGGC‑CCACGGCGAACCTTCCCCCTTTCCGTCACcgggtgaacacctatg > 2:435902/1‑227 (MQ=255) tGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGttt > 1:170619/1‑239 (MQ=255) gATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGGGATCGGCCTTTTCCGGCGGCCCATTAACCA‑GCGCGCGGG‑AAACCGTGCGCCCCGGCCAACTCTCCCACTTGCGGTCACGGGGcggcccccgcttc > 2:150308/1‑226 (MQ=255) ccAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGGGCGCCACGGCGAATCTTCCCCCTTCCGGTCACGGGGCGGACTCTGTTTTTCATccc > 1:681834/1‑237 (MQ=255) gcgcGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGCCCCTGTTTGTCATCccgggc > 1:241147/1‑239 (MQ=255) gcgcGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCccggcc > 1:855577/1‑237 (MQ=255) gcgcGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCCCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACGCTGTTTGTCATAccgggc > 1:246921/1‑239 (MQ=255) gcgcGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGGCTCATCACCCG‑GCGCGCGGG‑AAACCGGGCGCCACGGCGAATCTTCCCCCTTGCGGTCACGGGCGCGCCTCTGTTTgcactaccgggg > 2:720771/1‑228 (MQ=255) ccttCGCTTCCGGACGGCTAGGGAAAATTGCCTTGCATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGGTGGCGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCTCCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCGTCCCGCTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGa < 2:1065765/236‑1 (MQ=255) gTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTAATCGCGGGCGGGGCGCCGGCCACCGCCCGCACgagggttt > 1:305856/1‑231 (MQ=255) gTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCCGCTTGTCATCGCGGGCCGGGCGACGGACACCGCAAGACCGACAtttt > 1:985224/1‑236 (MQ=255) gTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTCCGCCACGGCGGATCTTCCCCCTTGCGGTCACGGGGCTGACTCTGTTTTGCATCGCGGGGGGGGCGCGGGCCCACCCCAGACCGAGATTTTccg > 2:651423/1‑238 (MQ=255) gTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGGGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGCCATCGCGGGCGGGGTGACGGCCCCCGCCACGACGGAAtttt > 1:820040/1‑236 (MQ=255) ccTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTTCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGCCAGCACGACATTTTCCT‑gg > 1:206028/1‑238 (MQ=255) cATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGGC‑GCAACACTTCCGGATCAATAAAACTTTTACCACGGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGAcgccc < 1:435902/239‑1 (MQ=255) gCCGTAGCCGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTcc < 1:720771/239‑1 (MQ=255) gTAGACGCGGGTTTCTTCCGCACGGCGACGAC‑GCAACCCTTCCGGATCAATAAAACTTTTACCCCTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCgg < 1:108813/239‑1 (MQ=255) tAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGGCTCTGTTTGTCATCCGGGGCGGGGGGACGGCCACCGCCACCCAGGACTTTTCCTGGGAGGCCAGCCCCC‑TTCCCGGt > 2:392546/1‑239 (MQ=255) cttcCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTgg < 1:651423/239‑1 (MQ=255) cGCACGCTGCCGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCCCTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCCTCGCGGGCGTGGCGACGGCCACCGTCCGGACGAGATTTTCCT‑GGGCGCCCCCCCCCTTTCCCCGGCCCCGGGTCGTggttga > 2:1062516/1‑235 (MQ=255) gcccGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCCCCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACg < 1:129133/236‑1 (MQ=255) ggcgcc‑gCAACCCCTCCGGATCAAAAAAACTTTTCCCCCTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTTCGGCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCa < 2:855577/234‑1 (MQ=255) cgccccaccccTTCCGGATCAATAAACCTTTTACCCCTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGa < 1:684615/229‑1 (MQ=255) cgacccaccctttCCGGTTCAATAAAACTTTTCCCCCTGATGCCACCGTTATCGGCCTTTGCCGGCGTCTCATCCCCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAACCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGa < 2:241147/228‑1 (MQ=255) ccacagacatcctCCGGAATAATAAACCTTTTCCCCCGGATGCCCGCCTGTTCGGCCTTTTCCGGGGGTCCCTCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCCAAACTGCCCTCTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑TGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGa < 2:753763/227‑1 (MQ=255) ttCAATAAAACTTTTCCCCCTGATGCCCCCGTGATCGGCCTTTCCCGGCGGCTCATCCCCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCGGa < 2:883390/238‑1 (MQ=255) aTCAATAAAACGTTTCCCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCGCCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCgg < 1:904902/238‑1 (MQ=255) aTCAAATAAACTTTTACCACGGATGCCCCCGTGAGCGGCCTGTTCCGGCGTCTCATCCCCCG‑GCGCGGGGG‑AACCCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGGTTGGCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCgg < 1:1062516/238‑1 (MQ=255) aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGAcgcccg < 1:880940/177‑1 (MQ=255) aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGAcgcccg > 2:880940/1‑177 (MQ=255) aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCGGacata > 1:883390/1‑239 (MQ=255) aTAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGCTGTGGGTACGTTTATCAGAATCATCATCCCTGCGGacaa > 2:598726/1‑237 (MQ=255) tAAAACTTTCACCCCTGGTGCCACCGTGTTCGGCCTTGTCCGGCGTCCCATCGCCCG‑GCGCGCGGG‑AAACCGTTGGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTTACTCTGTTTGCCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCGGacatac < 2:246921/239‑1 (MQ=255) aaaaCTTTTCCCAACGACGCCCCCTTGTCTGGCCTTTTCCGGCGTCCCCCCCCCCG‑GCACGCGGG‑AATCCGTCCCCCACGGCGAATCTTCCCACTTGCGGCCACGGGGCTGAATCTGTTTTGCAGCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCGGacataca < 2:985224/239‑1 (MQ=255) ttttACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTgg < 1:563067/197‑1 (MQ=255) ttACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGT‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGATTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGTTTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGGTTATCATAATCATCATCACTCCGGACATACATCACttt > 1:722382/1‑239 (MQ=255) ttACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACCCGGGTTGTGGGTACGTTTATCCGAATCATCATCCCTCCGGACATACATCCCtt > 1:176661/1‑238 (MQ=255) aCCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCCCTTGCGGTCCCGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGCCGGCCCCCGTCAGCACGCGATTTTCTT‑GTCCGCCCCCCCCCTTTCCCGGTACCCGGGTTTTGGTTCCGTTTTTCAGAACCCTCATCCCAGCGGCCCACCATCCCTTTg > 2:623193/1‑238 (MQ=255) aCCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGCTCGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGGTGTGGGGACTTTTTTCAGAATCACCATCCCTGCGGCCAAAAATCACTTTg > 2:618114/1‑238 (MQ=255) | TTCCGTGCCTGACGCTTTTGTCAATTCCGCTTCATCCACCACATGGTACGCTTTGCGGTTTGCTGCCATCCAGCGCAAAGCTTCTTTAAAACGCGGCGTTACACTCTGGATAAACCAGGCGCGAACAATCGCTTCCGGACGGCTCTGGAAAAGTGCCTGACATGCATTTTCGCCGTAGACGCGGGTTTCTTCCGCACGCTGACGAC‑GCAACACTTCCGGATCAATAAAACTTTTACCACTGATGCCACCGTGATCGGCCTTTTCCGGCGTCTCATCACCCG‑GCGCGCGGG‑AAACCGTGCGCCACGGCGAATCTTCCCACTTGCGGTCACGGGGCTGACTCTGTTTGTCATCGCGGGCGGGGCGACGGCCACCGTCAGCACGAGATTTTCCT‑GGACGCCCGCCCCCTTTCCCGGTACGCGGGTTGTGGGTACGTTTATCAGAATCATCATCACTGCGGACATACATCACTTTG > NC_000913/2718020‑2718491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |