New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3820552 =	181 (1.590)	4 (0.040)	3/416	NT	2.2%	coding (618/1683 nt)	ligB	DNA ligase, NAD(+)‑dependent
	?	NC_000913	= 3820548	179 (1.610)					coding (622/1683 nt)	ligB	DNA ligase, NAD(+)‑dependent
Rejected: Frequency below/above cutoff threshold.

GATGGCGTTGCGGTAACCCTGGTTTATCGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTGTGCCGCAAACCGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCT‑‑‑TG‑AT‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3820794‑3820552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tg‑at‑‑gCGCCAGGACGATAGCGACACGCTGAATTCTCTGGGCGTTTTTGTCTGGGCATGGCCGGATGGACCGCAGTTAATGTCTGATCGTTTAAAAGAGCTGGCTACCGCAGGTTTTACTCTAACGCAGACGTATACCCGTGCGGTGAAAAATGCTGATGAAGTTGCGCGCGTACGCAATGAGTGGTGGAAAGCGGAATTACCCTTCGTCACCGATGGCGTAGTTGTACGAGCGGCGAAAGAGC  <  NC_000913/3820548‑3820311                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tATGGCGTTGCGGTAACCCTGGTTTATCGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTGTGCCGCAAACCGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCT‑‑‑T                                                                                                                                                                                                                                                       <  2:267385/238‑1  ATGGCGTTGCGGTAACCCTGGTTTATCGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTGTGCCGCAAACCGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGAAAAAGTTGCTGGCT‑‑‑TG                                                                                                                                                                                                                                                      >  1:976093/1‑239  ATGGCGTTGCGGTAACCCTGGTTTATCGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTCTGCCGCAAACCGTTAGCGGGCCTTTAGCCAACAGTACGCATCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAGGTGTCTGGAT‑‑‑TG                                                                                                                                                                                                                                                      >  2:337198/1‑239      CGTTGCGGTAACCCTGGTTTATCGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTGTGCCGCAAACCGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCT‑‑‑TG‑AT‑‑G                                                                                                                                                                                                                                                <  1:316983/238‑1                     GGTTTATCGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTGTGCCGCAAACCGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGGAATATTTCTCCAGCGCGAGGGGCATATCCAACAAAAAATGGGGGGAATAAATGCCCGCGCCAAAGGTGGTGGCT‑‑‑TG‑AT‑‑Gaagggcgaggaggaaa                                                                                                                                                                                                                                >  2:591771/1‑223                            CGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTGTGCCGCAAACCGTTAGCGGGCCTTTAGCCACCAGTACGCTTCCGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCCACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCT‑‑‑TGCATAAGCGCCAGGACAAGAACGACA                                                                                                                                                                                                                             >  2:539377/1‑238                                                                                                                            ACCGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCT‑‑‑TG‑AT‑‑GCGCCAGGACGATAGCGACACGCTGAATTCTCTGGGCGTTTTTGTCTGGGCATGGCCGGATGGACCGCAGTTAATGTCTGATCGTTTAAAAGAGCTGGCTACCGCAGGTTTTACTCTAAC                                                                                                                         >  1:762447/1‑239                                                                                                                              CGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCT‑‑‑TG‑AT‑‑GCGCCAGGACGATAGCGACACGCTGAATTCTCTGGGCGTTTTTGTCTGGGCATGGCCGGATGGACCGCAGTTAATGTCTGATCGTTTAAAAGAGCTGGCTACCGCAGGTTTTACTCTAACGC                                                                                                                       <  2:762447/239‑1                                                                                                                                                              AGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCTTGATG‑AT‑‑GCGCCAGGACGATAGCGACACGCTGAATTCTCTGGGCGTTTTTGTCTGGGCATGGCCGGATGGACCGCAGTTAATTTCTGATCGTTTAAAAGAGCTGGCTACCCCAGGGTTTACTCTAACCAAGAGTAATACCCCGGGGGGGAAAAAAGCg                                                                                          >  2:469199/1‑238                                                                                                                                                                                                                                                  TG‑AT‑‑GGGCCAGGGCGATGGCGAACCGCTTAATTCTCTGGGCGGTTTTGTCTGGGCATGGCCGGATGGACCGCAGTTAATGTCTGATCGTTTAAAAGAGCTGGCTACCGCAGGTTTTACTCTAACGCAGACGTATACCCGTGCGGTGAAAAATGCTGATGAAGTTGCGCGCGTACGCAATGAGTGGTGGAAAGCGGAATTACCCTTCGTCACCGATGGCGTAGTTGTACGAGCGGCGAAA      <  1:1310437/239‑1                                                                                                                                                                                                                                                         GCGCCAGGACGATAGCGACACGCTGAATTCTCTGGGCGTTTTTGTCTGGGCATGGCCGGATGGACCGCAGTTAATGTCTGATCGTTTAAAAGAGCTGGCTACCGCAGGTTTTACTCTAACGCAGACGCATACCCGTGCGGTGAAAAATGTTGATGAAGTTGCGACCGTACGCAATTAGGGGTGGAAAGCGGATATACCCTTCGTCACCGATTGGGAAGTTGTACGAGCGGGGAAAGAac  >  2:300752/1‑237                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GATGGCGTTGCGGTAACCCTGGTTTATCGGGACGGGAAACTGAACAAAGCAATCAGTCGCGGTAATGGCCTGAAAGGCGAGGACTGGACGCAGAAAGTTAGCTTAATTTCCGCTGTGCCGCAAACCGTTAGCGGGCCTTTAGCCAACAGTACGCTTCAGGGGGAAATATTTCTCCAGCGCGAGGGGCATATCCAACAACAAATGGGGGGAATAAATGCCCGCGCAAAAGTTGCTGGCT‑‑‑TG‑AT‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3820794‑3820552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tg‑at‑‑gCGCCAGGACGATAGCGACACGCTGAATTCTCTGGGCGTTTTTGTCTGGGCATGGCCGGATGGACCGCAGTTAATGTCTGATCGTTTAAAAGAGCTGGCTACCGCAGGTTTTACTCTAACGCAGACGTATACCCGTGCGGTGAAAAATGCTGATGAAGTTGCGCGCGTACGCAATGAGTGGTGGAAAGCGGAATTACCCTTCGTCACCGATGGCGTAGTTGTACGAGCGGCGAAAGAGC  <  NC_000913/3820548‑3820311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.