| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,616,668 | A→G | 17.4% | M193V (ATG→GTG) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,616,668 | 0 | A | G | 17.4% | 120.4 / 4.7 | 51 | M193V (ATG→GTG) | bepA | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| Reads supporting (aligned to +/- strand): ref base A (4/37); new base G (8/2); total (12/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.94e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGCCCTGTTCCGTTATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATGCGCCCGATGGTGGTGCAGTCGTCGGA > NC_000913/2616444‑2616906 | tttgccTGTTCCGTTATTCCGATAACGAAAGTCAACTGGCTTCAGGTATGGCGCCCGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCAcc < 1:752437/235‑1 (MQ=255) tGCCCTGTTCCGTTATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGGTGGCGGGGCTTACCGGTGCACTGGC‑GGGGGA‑‑GCGGCCGGGGAGGATGAGATTGAccc > 1:629791/1‑239 (MQ=255) tGCCCTGTTCCGTTATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACCACGCC‑GGGAAC‑‑CGGGCAAGGGGGGGTCAGGTTCAcc > 1:933600/1‑238 (MQ=255) gTTCCGTTATGCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGGCCCCCACCGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCaaa < 1:212290/239‑1 (MQ=255) ttCCTTTTTTCCGATAACGAAAGTCAACGGGCTTCAGGTTTGGCGCCAGAAATCCCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCTGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCaaaa < 2:933600/239‑1 (MQ=255) ttCCGTTATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGGTCTATTTTACTGGCGATGGCCAGTCCGCGGGCGGGGGTGGCGGGCGTGACCGGGGCCATGGG‑GGGGACCGGCGCCGGGGGAGGA‑GAGTTTCACCCAACaaa > 2:502856/1‑239 (MQ=255) tCCGTTATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGGCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCaaaa < 1:1080026/238‑1 (MQ=255) ttATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGGTGGCGGGGCTTGCCGGGACACTGGC‑GGGGAC‑‑CCGGCCGGGGGGGGTCCGGTTTACCCCGCCAAATggaa > 1:418900/1‑236 (MQ=255) ttATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGGAGGCGGCGCTGACCGGTACACTGGC‑GGGGAA‑‑ACGGCCGGGGGCGATCAGtttttccccacacaagaaac > 1:745486/1‑222 (MQ=255) aTAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGGAC‑‑GCGTCCGGGGGGGATTCGGTTCACCCACCAAAATGGAACGGAAGCg > 1:288268/1‑239 (MQ=255) aTAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGGACACTGGC‑GGGGAT‑‑CGGTCCGGGGGAGGTACGTTTTTCCCCCCAAAAAGAACAGGaaagg > 1:742619/1‑236 (MQ=255) aaCGAATGTCAACTGGCTTCAGTTAGGGCGCACGAAATCTCCCACGTCCCCCAACGTCACCTGGCGCGAGCGATGGAATATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGa < 1:986265/239‑1 (MQ=255) aCGAAAGTCAAATGGCTTCAGTTAAGGCGCACGAAACCTCCCACGTCACCCAACGGCACCTGGCGCGAGCGGTGGAAGATCAGCAGCGCAGCGCGCCGCTGGCCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGAc < 1:689163/239‑1 (MQ=255) gAAAGTCAACTGGGTTCAGTTAGGGCGCACGAAATCTCCCCCGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCg < 2:894990/239‑1 (MQ=255) aGTCTACTTGCTTCAGTTATGGCCCACTAAATCTCCGCCGTCACCCAACGTCCCCGGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGGCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑At < 2:453374/239‑1 (MQ=255) aGTCAAGTGGCTTCAGTTAGGGCGCACGAAATCTCCCACGTCCCCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑At < 1:593910/239‑1 (MQ=255) aGTCAACTGGCTTTAGTTAGGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑At < 1:447067/239‑1 (MQ=255) aGTCAACTGGCTTCAGTTATGGCGCACGAAATCCCCCACGTCCCCCAACGTCCCCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGGCCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑At < 1:502856/239‑1 (MQ=255) aGTCAAATGGCTTCAGTTATGGCACACGAAATCTCCCACGGCCCCCAACGTCACCGGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑At < 1:1066497/239‑1 (MQ=255) ttCAGTTTTGGCGCACGAAATCCCCCACCGCCCCCAACGGCACCTGGCGGGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGGGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAgg < 2:1335090/239‑1 (MQ=255) aTGGCGCCAGAAATCCCCCACGGCCCCCAACCTCGCCGGGCGCGAGGGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCa < 2:745486/239‑1 (MQ=255) gcACGAAACTTCCCACGTCCCCCAACGTCACCGGGGGGAGGCGATGGAAGATCAGCAGGGCGGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCt < 2:418900/239‑1 (MQ=255) cacacaaTCTCCCACGGCCACCAACCTCACCCGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCGGACCTGGGGCGGCGCGTTAGGTTCTATTTGACTGGAGATGGCCAGTCCGCAGGCGGGGATGGCGGAGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTc < 1:1082467/234‑1 (MQ=255) cACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGGAA‑‑GCGTGAGGGGGTGACCAGATTTTCCCAGCCAAAACAAAAGGGAACGGGCCGC‑CTTGGTGGTTCTGTGCTGCaaaaccc > 1:552431/1‑234 (MQ=255) aTCCCCCACGTCCCCCAACGTCCACGGGCGCGAGCGATGGAAGATCAGCAGCGTAGCGCGCCGCTGCCCGGGGTCGGCGCGTTAGGTTCTATTTTACGGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGAtt < 1:477732/239‑1 (MQ=255) aCCCAACGTCACCGGGCGCGAGCGAGTGAAGATCAGCAGCGCAGCGCGCCGCTGCCCTGGGTCGGCGCGTTAGGTTCTATTTTACGGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAgg < 1:583076/238‑1 (MQ=255) ggcggTGGAAGGTCAGCAGGGCAGCGGCGCGTTGACCGGGGGCGGCGGGTTAGGTTCTATTTGACTGGGGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGaa < 1:579374/237‑1 (MQ=255) aaGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACa < 1:1345349/154‑1 (MQ=255) tCAGCAGCGCAGCGCGGCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATc < 1:1159624/239‑1 (MQ=255) cgcgcaggcgggcgttGACCTGGGTCGGCCGGTTAGGTTCTATTTTACTGGCTATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTTCACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCCCCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGgc < 1:329798/223‑1 (MQ=255) ctttgttgtttttttCCGGGCGTTGGCCGGTCCGCAGGCGGGGATGGAGGCGGTGAGCGGGACGCTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTa < 2:515588/227‑1 (MQ=255) gatggcacatCCGCAGGCGGGGATGGCGGCGCTGACCGTTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCCCCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGAGTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGaa < 1:442172/229‑1 (MQ=255) gATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGaa < 1:1206694/238‑1 (MQ=255) gATGGCCAGTCCGCAGGCGGGGATGGCGGCGCCGACCGGTAAACTGGCGGGGAAC‑‑CCGCCGGGGGGGGATCGGTTTACCCCCGCAAAA‑AAAAAGGAAACGGGCCGCAATTGGTTTTCGTGGCCTCCACGCCCCGGGGTCCGAT‑CGCCGGCGGAGCCAACCCTCCTCCGAAAAAAAATCGGTCAGGAGCGGTGATACTCCCCCCCGCCCGGAAAttttttatatccccccctgcccggaa > 2:495670/1‑217 (MQ=255) cAGTCCGCGGGCGGGGATGGCGGCGCTGACCGGTACACGGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAgtcgt < 1:226762/238‑1 (MQ=255) ccggggggggATGTCGGGGCTGACCGGGACACTGGC‑GGGAAC‑‑GGGTCAGGGGATGAACAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAg < 2:288268/233‑1 (MQ=255) tGGGGGCGCTGACCGGTACACTGGC‑GGGAAT‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCaa < 1:1203503/238‑1 (MQ=255) gtatgtgtataagagacagacgggC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATGCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCaa < 1:279116/216‑1 (MQ=255) cagcgcTGGACGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCg < 1:742705/236‑1 (MQ=255) cggcgtaaccgggtccatGGC‑GGGAAC‑‑GCGTCAGGGGGAGAACAGTTTCACCCAGCAAAATGAACAGGAAGGGGAACGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGAAGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCATCGCGCCCG‑CCGGAAATTTGATTTACTCACCCGTGGCCGGAAAGTCGTCTGGCAGATGCCCCCAACCGTg < 2:1241711/222‑1 (MQ=255) ggTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGAt < 1:495670/239‑1 (MQ=255) ggTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGCGCTAATCAGAt < 1:316385/239‑1 (MQ=255) tACACTGGC‑GGTAAC‑‑CCGTCAGGGGAAGATACGTTTTACCCCGCCAAATTAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTACTGCAACGCTCGGGATTCGATCCCCAGGCGACGCCAACCTTACTCGCAAAATTACTCGCTCAGGCGCGCTATTCCCCACGCCCC‑CCCGGCACTTTTTTTACACTACCCCTGCCCGAAAGTCGCCTGGCAGAGGcccccgcacaggctaaagcaaagg > 2:94178/1‑218 (MQ=255) tACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTGCTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATg < 1:979385/238‑1 (MQ=255) gtcacaggggggggAC‑‑GTGTCAGGGGGTGTTCAGTTTCCCCCCACAAAACGAACCGGGAGCGGACCGA‑CTTGGTATTCAGGTGCTGCAACGCTCGGGATTCGACCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CTGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTAGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATg < 2:545980/229‑1 (MQ=255) ggggaagcggggggacaggtgcAGGGGATGGCCATTTTCCCCCACCAAAAGTAACAGGAAGCGCACCGC‑ATTGGTATTCAGGTGCTGCACCGCTCGGGATTCGATCCGCAGGCCATGCCAACCTTCCTCGAAAAATTACTCGATCATGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCTCCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGAt < 2:251746/218‑1 (MQ=255) cagggggggAAC‑‑GGGTCGGGGGATGATCAGTTTCCCCCACAAAAATGAACAGGAAGTGGACCGC‑TTTTGTATCTAGGTGCTCCAACGCTCGGGCGTCGATCCCCAGGCGATGCCACACTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCTCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATGCGcc < 2:1363961/233‑1 (MQ=255) gC‑GGGAAC‑‑GCGTCAGGGGGTGATCAGTTTCACCCAGCAAAAAGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGGGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAAACTTCCTCGAAAAATTACTCGATCAGGCGCGTTCCTCCTCCCCCCCC‑CCGGAAATTTTTTTGAATCACCCGTTGCCGGAAAAGCGTCTGGCCGAGGCCCCCAACCgcggcaaccagcatggcccgac > 2:1253528/1‑218 (MQ=255) cggctaaGGGGATTATCAGTTTCACACAACAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATGCGCCCGATGgtggtg < 1:1079866/233‑1 (MQ=255) gTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATTCGCCCCCTggtggt > 1:1363961/1‑235 (MQ=255) ggATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATGCGCCCGATGGTGGTGCAgtcgt < 1:130092/237‑1 (MQ=255) atgatCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGCGCTGCAACTCTCGGGATTCGACACCCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCCCGTTACTCCTCACGCCCG‑CCGGAAATTTTATTGACTCACCAGTTGCCGGAAAGTCCCCCGGAAGATCCCCGCTAACGAGCTCATATGACGAGCCCgccgggggggcggcccgcgga > 2:180359/1‑219 (MQ=255) | CTGCCCTGTTCCGTTATTCCGATAACGAAAGTCAACTGGCTTCAGTTATGGCGCACGAAATCTCCCACGTCACCCAACGTCACCTGGCGCGAGCGATGGAAGATCAGCAGCGCAGCGCGCCGCTGACCTGGGTCGGCGCGTTAGGTTCTATTTTACTGGCGATGGCCAGTCCGCAGGCGGGGATGGCGGCGCTGACCGGTACACTGGC‑GGGAAC‑‑GCGTCAGGGGATGATCAGTTTCACCCAGCAAAATGAACAGGAAGCGGACCGC‑ATTGGTATTCAGGTGCTGCAACGCTCGGGATTCGATCCGCAGGCGATGCCAACCTTCCTCGAAAAATTACTCGATCAGGCGCGTTACTCCTCGCGCCCG‑CCGGAAATTTTATTGACTCACCCGTTGCCGGAAAGTCGTCTGGCAGATGCCCGCAACCGTGCTAATCAGATGCGCCCGATGGTGGTGCAGTCGTCGGA > NC_000913/2616444‑2616906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |