| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 375,176 | A→G | 18.5% | intergenic (+295/‑283) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 375,176 | 0 | A | G | 18.5% | 123.1 / 2.8 | 64 | intergenic (+295/‑283) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| Reads supporting (aligned to +/- strand): ref base A (27/23); new base G (9/5); total (36/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGG > NC_000913/374950‑375411 | cTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGGCGCGTTAGCGTCGCATGAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc < 1:1277498/239‑1 (MQ=255) cgaagggtGGCGGGAGAATTTGTAGGGTTGATAAGGAGCGTTAGGGTCGCATCAGGGATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTAGCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGa < 1:368389/231‑1 (MQ=11) cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTTTCGGCCTGATaaac > 1:651517/1‑236 (MQ=255) cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCCTATCCGGCCTACCGGGGGGGCGGGAATTTTTAGGCCTGTTAAGAc > 1:710885/1‑239 (MQ=255) cGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGGGAATTTTTAGGCCTGAtcaaacc > 1:190341/1‑231 (MQ=255) aaTTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATCGCGCGGGAATTTGTAGGGCTGATAAGACGCGTTAGCGTCGCATTAGGCATCTGCGACCGCCTGCCGGATGCGGGGCGACCGCCTTCTGCGCGCTCCGCCTCGCGCGGGAATTTTTAGGCCAGATagatagcgccggcgcgggagg > 2:710188/1‑219 (MQ=11) ttAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGGGGGAATTTGTAGGCCTGAGAAGACGAGTTAGCGGCGCATCAGGCATTTGCGCACGAATGCCGGATGGCGGGTGAACGCCTCATCCGGCCTACGGTGAGCGCGGGAGTTTGTAGGCCGGTAAAAAAGCGTTACAGGCGCATAAgcgaatgcgcaagccatggcgga > 2:1269098/1‑217 (MQ=2) gttCGCCTGAGGGATCTGCGCGCGCCTGCCGGAGGCGGCGTGAACGCCTTATCCGGCTTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATgcg < 2:468862/237‑1 (MQ=255) gtgcccacgagggccttggggaggACGGCCGGGTGGGGGCTGACCGCCGTATCCGGCCTTCGGGTGGCGCGGGAATTTGTAGGCCTGATAAGACGGGTGAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATgcg < 2:890410/216‑1 (MQ=11) cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCg > 1:267682/1‑199 (MQ=38) cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCg < 2:267682/199‑1 (MQ=38) cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGTGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGGCGCATCAGGCATCTGCGCA‑CGACTGCCGGATgcggctgg > 1:265211/1‑236 (MQ=16) tGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCCTCCGGCACCTGCGCACGACTGCCGGATGCGGCCGGAACGCCTTATCCGCCCCACGGGTGGCGCGAGCATTTTTTGGCCTGTGCAAATCTGTGACCGTCGCACCACGCACCTTCGCA‑CACCTGCCgcgatagggggcaccgcccttcc > 2:676369/1‑217 (MQ=2) tGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGGGAATTTGTAGGCCTGATAAGACACGGTAGCGTGGCATAAGGCATCTGGGCA‑CGACGCCCGGGAGCGGGCGAAACGCCTTaa > 2:956119/1‑237 (MQ=11) tGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTTCGTA‑CGACGTCCGGATGCGGGGTAAACGCCTTAt > 1:1162204/1‑238 (MQ=255) gACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt < 1:1228931/238‑1 (MQ=38) cTGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACCCCTTATCCGGCCTACGGGGTGCGCGGGAATTTTTAAGCCCGATAAGAACCGGTTGCGGCCCATCAGGCATAT‑TGCACCCACCTCCGGATGCGGCAGAAACGCCTTaacgcgtaaccg > 2:1252399/1‑228 (MQ=11) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa < 1:894817/239‑1 (MQ=39) cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTa < 1:180996/147‑1 (MQ=255) cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGGGCGCGAGAATTTGTa > 2:180996/1‑147 (MQ=255) cgTGAACGCCTTATCCGGCCTACGGAGGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGGGCGCGGGAATTTGTAAGCCCGAGAAAACGCGTTAGCGTGCCATCCGGCATCTGCGCA‑CCACTGCGCGATGCGGCGTAAACGCCTTTACCGGCCCACGAGGGG‑CGCgggca > 2:443768/1‑237 (MQ=11) tCCGGCCCACGGATGGGTGGGGAATTGGTAGGCCTGATAAGACGCTTTCGCGTCGCATCAGGCATCTGCGCACGCCTGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGa < 1:676816/239‑1 (MQ=14) gCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGGAAAGCCCCTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGccgggtaca > 1:1256555/1‑232 (MQ=255) gCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGCCGCGAGCATTTGTAGGCCTGATAAGACGCGTTCTCGTCGCCTCAGGCAACTGCGCA‑CCACTGCCGGGTGCGGCGTAAACGCCCTATCCGGCCCACCGATGG‑CGCGGGAATTTgcatcccggcgaag > 2:1128675/1‑226 (MQ=14) cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGGATGGCGCGGGAATTTGTACGCATGATAAGACGCGTTCGCAGCGCATCAGGCATCTGGCCA‑CGACTGCCCGGTGCGGCGTGAACGCCCTCTTCGGCCTCCGGGGAG‑CGGGGGAActtttcgggcgggagagag > 2:822895/1‑223 (MQ=14) cTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTCGCGGCGCATCAGGCCTCTGGGCA‑CGCCTGCCGGATCCGGCGAAAACCCCCTACGCAGCCCACCGATGGCCGCGGGAAatttggggcagataaaaa > 2:668495/1‑224 (MQ=14) ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑c > 1:1102430/1‑160 (MQ=40) ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑c < 2:1102430/160‑1 (MQ=40) gggggAATTTGTAGGGCTGATAAGACGCGTTAGCGTCGGATCAGGCATCGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGt < 1:483787/236‑1 (MQ=255) gCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGC‑CGCGGGAATTTGTAGGCCTGTTAAAACGCGTTAGCGGCGCCTCAGGCATCt > 1:846650/1‑238 (MQ=255) aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATTTGCGCA‑CGACTGCCGGATgc > 1:732627/1‑151 (MQ=18) aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATgc < 2:732627/151‑1 (MQ=33) aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGGTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACCGCCGGATGCGGCGGAAACTCCTTATCCGGCCTACGGGTGGCCGCGGGAA‑TTGTAGGACCGATTAGACGCGTTCGCGTCCAATCAGGCACCTGCCAACGaacg > 2:704861/1‑236 (MQ=11) aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGCATTTGTAGGCCTGATAAGAGGCGTTAGCGTCGCATCAGGCATCTGCACACGaat > 1:1175219/1‑236 (MQ=255) gCATCGGGCACCTGCGCACGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTTCGGGTGGCGCGAGAATTTGGAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa < 1:253905/239‑1 (MQ=255) ccATCGGGCATCTGCGCACGGCTTCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa < 1:956119/238‑1 (MQ=255) cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGCGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTAGCATCAGGCATCTGCGCA‑CGCCTGCCGGATGCGGCGAAAACGCCTTACCCGGCCTACGGCTGG‑CGCGGAGATTTGTAGGCATGATAAGAAGCGTTAGCGTCGGATACAGCATCTGccaccgcccgacggaggggataaa > 2:253905/1‑216 (MQ=11) tcccagcACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCGGCACACGACTGCCGGATGCGATAAACGCCTTGt > 1:932481/6‑238 (MQ=255) cTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGTCCTGATAAGACGCGTTAGCGTTGCAACAGGCATCTGCACCCAACAGCCGGAGGCGACAAACGCCTTGTcc > 2:1255865/1‑239 (MQ=14) cTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTc < 1:668495/238‑1 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATCG‑CGCCGGCATTTGTCAGCCTGATAAGACGCGGTAACGTCCACTCCGGCCACTCCCCCCCCCCGCCGGATGCCATAAAAGTATTTTCCgggcc > 2:620853/1‑235 (MQ=11) tGCCGGTGGGGGAGTGAACGTCTTATCCGGCGTCGGGGTGGCGCGAGAATTTGTAGGGCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGGGGCGGAAACGCCTTATCCGGCCTACGGATGG‑CGGGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACAttt < 2:190341/239‑1 (MQ=14) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGCCTTTTCCGGCCTACAtt > 1:1018734/1‑238 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTc > 1:1155726/1‑238 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGAA‑CGACTGCCGGATGCGGGGTAACAGCCTTATCCGGCCTACGGATCG‑GCCTGGGATTAGTAGGCCTGAGAAGATCCGGTACCGCCGCACACGGACTCTGCACACGACCGCCCGAGGCGATAAAAGTCTTGTCCGGcccaaaatac > 2:304471/1‑230 (MQ=14) tgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGGAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCTACTGCGCA‑CGAGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc < 1:676369/237‑1 (MQ=255) gcggAACCCCTTATCCGGCCTACGGGTGGCCGGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc < 1:552341/235‑1 (MQ=255) tGAACGCCTTAACCGGGCCACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAg < 1:443768/238‑1 (MQ=255) cccctttttCCGGTCTGGGGGTGGGGGGGGAATTTGTAGGCCTGATAAGAGGGGGTAGGGGCGCATCAGGCATCTGCGAC‑CGACTGCCGGATGCGGCGTAAACGCCTTAGCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCa < 2:1224759/230‑1 (MQ=17) aCGGCTTAGCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCa < 1:822895/238‑1 (MQ=255) aCGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGTCATCTGCACACGCCTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTTGCCCGTAGGCAGTCAt > 1:1231537/1‑239 (MQ=255) cTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTaaa < 1:1255865/239‑1 (MQ=255) tttcccGGGCTTCGGGTGGCGCGGGAATTTGGAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTaaa < 1:1251375/234‑1 (MQ=255) gCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGCCTGCCGGATGCGATAAACTTCTTGTCCTGCCTACATTTCGCCCGTAGGCGGTCATTAAATAGTTTTg > 1:908779/1‑239 (MQ=255) cTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTc > 1:1128952/1‑196 (MQ=255) cTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTc < 2:1128952/196‑1 (MQ=255) aCGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTGG‑CGCGGGAATTTGTAGTCCTGATAAGACGCGTTATCGTCGCATCAGCCATCTGCACACGACGGCCGGATGCCATAAACCTCTTGTCCGGCCTACCTTTCCCCCGTAgtccacccttaaatatttttaatt > 2:340280/1‑215 (MQ=14) gggTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGTTAAACGTCTTGTCCGGCCTCAATTTCGCCCGTAGGCAGTCCTTAAATGGTTCTGTTTAcc > 1:724576/1‑238 (MQ=255) gggTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGGCGCAGCAGGCATCTGCGAA‑CGACTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTAcg < 1:340280/239‑1 (MQ=255) ggTGGCGGGGGAATTTGGAGGCCTGAGAAGGCGGGTTAGGTGCCGATCAGGCATCTGCGCA‑CGTCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTAcg < 2:265211/238‑1 (MQ=18) ggggggagaATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCgg < 1:1252399/233‑1 (MQ=255) ggCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGc < 1:582353/239‑1 (MQ=255) gggcgGGAATTTGTAGGCCCGATAAGGCGGGGTAGCGTCGCATCAGGGATCGGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGc < 1:1343364/236‑1 (MQ=255) gcgcGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGCTAAGACGCGTTAGCGTCGCATCCGGCATCTGCACCCCACTGCCGGATGGGATAAACGGCTTTTCCGGCTTCAATTTCGCCCGTAGGCATGCATTAAATCGTTTTGTTTatcgg > 2:403104/1‑232 (MQ=17) gcgcGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCCCACGACTGCCGGATGCGGTAAACGTCTTGTCCGGCCTCCATTTGGCCCGTAGGAGGCCATTAAATAGTTCTGATTAtgcg > 1:760855/1‑236 (MQ=17) ggagaATTTGTAGGCCTGATAAGACGCGTTAGCGGCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTgg < 1:56128/237‑1 (MQ=255) | CTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑CGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGG‑CGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCATTAAATAGTTCTGATTACGCGGCTGG > NC_000913/374950‑375411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |