Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 388,319 | C→G | 16.3% | R175R (CGC→CGG) | tauD → | taurine dioxygenase, 2‑oxoglutarate‑dependent |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 388,319 | 0 | C | G | 16.3% | 167.9 / 2.4 | 73 | R175R (CGC→CGG) | tauD | taurine dioxygenase, 2‑oxoglutarate‑dependent |
Reads supporting (aligned to +/- strand): ref base C (44/12); new base G (2/11); total (47/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.78e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGACATTTATTGAAACGCCACCCGCAGGGGCGATTCTGGCAGCTAAAGAGTTACCTTCGACCGGCGGTGATACGCTCTGGACCAGCGGTATTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACCGCGTGACCC > NC_000913/388098‑388554 | gtgACATTTATTGAAACGCCACCCGCAGGGGCGATTCTGGCAGCTAAAGAGTTACCTTCGACCGGCGGCGGTAAGCCCTGGGGCAGCGGGCTTACCGGCCATGAGGCGGCCTATTTTTCCTTCCGCCCGCGTCCGGGTGGGGTGCGGGGGGAGCATGGATTTCCGTAAACCTTTCCC‑GAATA‑ACAATAACGCAAAAC‑CCAGGAGGGACATCCACCCATGCGGGCGGCGGGCGG‑CGaaaa > 2:38600/1‑239 (MQ=255) aTTTATTGAAACGCCACCCGCAGGGGCGATTCTGGCAGCTAAAGAGTTACCTTCGACCGGCGGTGGTACGCCCTTGGCCCGCCGTATTTTGGCCTTTGAGGCGGTCTCTCTTTCCTTCCCCCCGCCGCTGAGTGGGCTGGCGGCGGGGGCT‑GGTTTTCCTTAATCCATTCCGGGCTACCACATACC‑CAAAAC‑CCACGAGGAACAACAACCCTGGCCGGGGGCGGTG‑G‑CGaaaaaaacc > 2:372987/1‑234 (MQ=255) aCCTTCGACCGGCGGTGATACGCTCTGGACCAGCGGGAATGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGGGTGGGCTGGGGGCGGGGCCT‑TATTTCCCTAAAACGGTTCCGGAATA‑CAAATACCGCCAAAA‑CCAGGAGGAACATCCACCCTGGGCAGCGGCGGGA‑G‑AGCAAAA‑CCCGCCGCTGGCACACCCGGCGGGGCGCAcacgccccggcagagggaaaaacg > 2:367770/1‑216 (MQ=255) ttgttctctctGGGCCGGGGGTTTTGCGCCTTATGGGGCGCTTTCTGTCCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGGGGAGCAT‑GATTCCCGTAAATCGTCCCCGGAATA‑CAAATCCCGAAAAAC‑CGAGGAGAAACACCAACGCGGGCGGGAGGGGGTC‑G‑CGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGtgaatg < 2:1299756/232‑1 (MQ=255) agcgcctctGGACCAGGTGTTGTGAGGGCGTTGGGGCGCTCTCTTTTCCCTTCGCCCGGCTGTGGGGGGGGTCGGGCGGGGATCAT‑GTTTCCCGTAAATCGTTCCGGAAAAA‑CAAAGACCGAAAACC‑CGGGGAGGAACAACAACCGTGGCGAGAGGCGGTC‑G‑AGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGtgaatga < 2:1219549/233‑1 (MQ=255) tGGACCAGCGGTATTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACAACCGGTGGTGCGAACGCATCCGGTGACCGGTAA‑ACCGGCG‑CTG‑TTTGTGAATGAAGGCTTtat > 1:256765/1‑238 (MQ=255) cgggggTTTTGGGGCCTTGGGGGCCTTCTTTGTTCCCCTCCGCAAGTGGCTGGGGGGGCTGGGGGGGGAGCTT‑GATTCCCGAAAATCGTCCCCGGAAAA‑CAAATCCCGAAAGAC‑CGAGGAGGAACATAAACGCTGGGGCGGGGCGGTC‑G‑CGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTAcgc < 2:353209/235‑1 (MQ=255) gCGGTATTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCt < 1:810553/166‑1 (MQ=255) gCGGTATTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCt > 2:810553/1‑166 (MQ=255) cGGTATTGCGGCCTATGAGGCGCTCTTTGTTCCCTCCCGCCGGCTGCTGAGTGGGCTGCGGGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATCCCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGt < 1:681528/192‑1 (MQ=255) cGGTATTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGACAAA‑CCCGCCGTTGCTAACTCCGGGGGTGCGAAAGCATCCGGGGAGCGGTAA‑AAAGGCG‑CGG‑TTTGTGAATGGAGGCTTtaacaggggaa > 2:1279787/1‑230 (MQ=255) cGGTATTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGATCGGTAA‑ACAGGCC‑GTG‑TTTGTGAATGAAGGCTTTACAAcgttct > 1:1219549/1‑235 (MQ=255) aTTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCCAACGCATCCGGTGAGGGGTAACAAAGGC‑‑CGG‑GTTTTGGATGAAGGCTTtactacccacattgg > 2:561400/1‑230 (MQ=255) aTTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGCTGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGGG‑CTG‑TTTTGGAATGAAGGCGTtaatatgtgcaatgt > 1:453391/1‑229 (MQ=255) tGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTtgt > 1:124894/1‑210 (MQ=255) tatactgagcTATCTGTTCCCTCCCGCCACCTGATGACTGGGCTGCGTGCGGAGCAT‑GATTTCCGGACAGCGTTCCCGGAATA‑AAAATACCGCAAAAC‑CGAGTAGGAACATCAACGCTGGCGCGAGGCTGTC‑C‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCAAACGCACCGGGTGGGGGGGAA‑GAAGGCGACTG‑‑TTGTGCATGAGGGCTTTAACACGCGAATGGGTGaagggat > 2:139904/9‑233 (MQ=255) tATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAg > 1:1311401/1‑239 (MQ=255) tATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAg > 1:1159711/1‑239 (MQ=255) tGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGACAAA‑CCAGCCGTTGCTACATCCGGTGGGGCGAACGCAACCGGTGAGGGGTAA‑ACAGGCG‑CTG‑TTTTTGTATGAAGGCTTTACACGGCGAAttgttgttggtggcg > 2:609194/1‑233 (MQ=255) ttttCCCTCCCGCCGGGGGGTGGGTGGGGTGGGGGCGGAGCAT‑GTTTACCGAAAATCGTACCCGGAACA‑CAAATCCCGAAAAAC‑CGGGGAGGAACACCAACGGGGGCGGGGGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCg < 2:569888/237‑1 (MQ=255) ttCCCTTCCGCCAGCTGCTGAGTGGGCTGCGGGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGAAATA‑CAAATCCCGCAAAAC‑CGAGGAGGAACATCAACGCGGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGaa < 1:375749/239‑1 (MQ=255) ttCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGGCtg > 1:548005/1‑238 (MQ=255) tCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAA‑AGAGCGAAGCCTTg > 1:732532/1‑239 (MQ=255) tCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑C‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGGCCGAACGCGTGCGGGGAGCGGTAA‑ACAGGCG‑CCGTTTTGTG‑AGGAAGGCTGTCCTACGCGAATTGTTGCTTGGAGCGACAAag‑agcacgaggacttt > 2:39049/1‑227 (MQ=255) cGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGCAAAA‑CCCGCCGTTGCTACATCCGGGGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑GTTGTGACTGAAGGCTTTACTCCGCGCATTGTTGATGTGGGCGAG‑Aag‑agaggcgagcccgtgat > 2:870272/1‑226 (MQ=255) cGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTTAGCGGGAAAA‑GGAGCGAAGCCTTGt > 1:569888/1‑238 (MQ=255) cGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑GGAGCGAAGCCTTGtt > 1:123999/1‑239 (MQ=255) cGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTAAGCGACTTGTTTATGTGGGCGGGAAAG‑AGAGCGAAGCATtttt > 2:999807/1‑239 (MQ=255) tcttgtgggTGGGGTGCGGGGGGGACAG‑GTTTTCCGTAAATCGGTCCCGGAATA‑CAAATACCGAAAAAC‑GGAGGAGGAACATCAACGCTGGCGCGGGGCGGGC‑G‑CGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGtt < 2:1159711/231‑1 (MQ=255) gctgctGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAACTCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGGAGGCTTTACTACGCGAATTGTTGAGGTGAGCGGGAAAG‑AGGGCGAAGCCATGTTAAGtt > 2:915643/1‑239 (MQ=255) gctgctGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAggt > 1:1062139/1‑237 (MQ=255) tgcgtgcgGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATCCCGCAAAAC‑CGAGGCGGAACATCAACGCTGGCGCGAGGCGGCC‑G‑CGCAAAA‑CCCGCCGTTCCTACATCCGGTGGTGGGACCGTATCCGGTGAGCGGGAA‑TCCGGCC‑CCG‑TTTCTGAATGAACGTTTTACTACGCGCATTTCTGCTGTGTGCGTGCAGC‑AGGGGGAAGACTTGTTAAATTTTTTTTTTGtccca > 2:271188/1‑237 (MQ=255) tgcgtgcgGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGGGCGAACGCATCCGGGGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCat > 2:1008279/1‑239 (MQ=255) cgtgcgGAGCCT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGTTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATACGGGGATGCGAACGCATCCGGTGCGCGTGTA‑ACAGGCG‑CCG‑TTGGTGAATCAAGGCTTTACTATGGTAATTGTTGAGGTGGGGGGGGAAG‑GAAGGGAGGCGATCTTAAGTTTTTTGTTTGACAatac > 2:1242190/1‑238 (MQ=255) gtgcgGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGGGAATGAAGGCTTTACTACGCGAATTGTTGATGTGGGGGGGAAAG‑AGAGGGAAGCCTTGTTAAGTTTTTTTTTTGCCCAAATc > 2:315456/1‑239 (MQ=255) gtgcgGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGCGAGCGGTAA‑ACAGGCG‑CTG‑CTTGTGAATGCAGGCTTTACTACCGGACATCGTGATGTGAGCGGGAAGGAAGAG‑GAAGCCTTGTTAAGTTTTTTTTTTGCCCaaaaa > 2:420968/1‑235 (MQ=255) aT‑GATTCCCGAAATTCGTTCCGGGAATA‑CAAATCCCACAAACC‑GGAGGAGAAACATCAACGCGGGGGCGAGGCGGTC‑G‑CGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAAcc < 1:315456/238‑1 (MQ=255) aT‑GATTCCCGAAAATCGTCCCCGGAAAC‑CAAATCCCGAAAACC‑CGAGGAGGACCATAAACGCTGGCGCGAGGCGGCG‑G‑CGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAAcc < 1:322152/238‑1 (MQ=255) tCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CAAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCCTCCGGTGAGCGGTAA‑ACCGACG‑CTG‑TTTGTGAGTGAAGGCGTTACTACGCGAATTGTTGATGTGAGCGAGAAGG‑AGAGCGAGGCCTTGTTGAGTTTTTTGTGTGCCCAAATCGCCAAACCGGAGttg > 2:1058005/1‑238 (MQ=255) gaaaaTGGTTCCGGGAATA‑CAAATCCCGAAAACC‑CGGGGAGGAACATAACCGCGGGGGGGGGGGGGTC‑G‑CGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAg < 1:561400/237‑1 (MQ=255) gTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTTAGCGGGAAAG‑AGACGGAAGCCTGGTTAATTTTTTTTTTTGCCCATATAACCAAACAGGGGTTTCAg > 2:84022/1‑239 (MQ=255) tCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTgcgctg > 1:943716/1‑238 (MQ=255) tCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGGgcgctg > 1:1354955/1‑238 (MQ=255) ccGGAAAA‑AAAATCCCACAAAAC‑CG‑GGGGGAAAAACAAAGCGGGGCGGAGGGGGGC‑C‑CGAAAAACCCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTgcgctggcg < 2:1354955/239‑1 (MQ=255) aca‑CAAAGCCCGAAAAAC‑GGGGGAGAAACCACCACTGTGGCGAGGGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGcgctggcgctgg < 1:1206123/236‑1 (MQ=255) aTA‑CAAATACC‑CAAAACGCGGGGAGAACCAGAAACGCTGGCGCGAGGGGGTC‑G‑AAAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCgctggcgctggc < 1:925972/239‑1 (MQ=255) aTA‑AAAATACCGCAACAC‑GGGGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CAAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGcgctggcgctgg < 1:356670/238‑1 (MQ=255) tcccccAAAAC‑ACAGGAGGCACATCAAGGGTGGCGGGAGGCGGTC‑G‑GAAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTCGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCaaa < 1:1058005/234‑1 (MQ=255) ccGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTAc < 1:1095068/65‑1 (MQ=255) ccGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTAc > 2:1095068/1‑65 (MQ=255) ccGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGGGCTGGCAACAAAATg > 1:431563/1‑239 (MQ=255) ccGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGGGGCCTGGGCCTGGCAACCaaaga > 2:661588/1‑237 (MQ=255) cAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGGGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCCCTGGCCACCAAACGata > 1:614804/1‑239 (MQ=255) cAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGCAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGCCGCTGGCAACCAAATGata > 1:217565/1‑239 (MQ=255) cAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCCAACCGGAGTTTCAGGTGCGTTGGCGCTGGCAACCacacaaaa > 1:1037688/1‑232 (MQ=255) cAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTAATACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGGGTTTCAGATGCGCTGGCGCTGGCAACCAATTGaaa > 1:15332/1‑237 (MQ=255) aaC‑CGGGGGGGAAAACAAACGGTGGGGGGGGGGGGGC‑GCCGAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATAtt < 2:943716/239‑1 (MQ=255) cc‑cGGGGGGGAACATCCACGGTGGGGGGGGGGGGGG‑G‑GGAAAAACCCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGGGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTg < 2:123999/238‑1 (MQ=255) c‑cGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGGGCTGGCAACCAAATGATATTGCg > 1:774518/1‑239 (MQ=255) gaACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGCGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGCGTTTCAGGTGCGCTGGCGCTGGCAACCAAATAAAATTTGGATTTGGGa > 2:538144/1‑239 (MQ=255) gaACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGa > 1:946928/1‑239 (MQ=255) aCATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATa > 1:87625/1‑239 (MQ=255) cctgtGGCGTGGGGGGGTC‑G‑CAAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACcgcg < 1:372987/235‑1 (MQ=255) aggggggCGGGAGGGGGTC‑G‑CAAAAAC‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACcgcg < 1:999807/234‑1 (MQ=255) accggggCGGGAGGCGGTG‑T‑CAAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTTAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACcgcg < 1:735352/234‑1 (MQ=255) aCGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGGTTTACTACGAGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGGTTTTTGTTTGCCCATATCCCCAAACCGGAGTTTCAGGTACGCTGGCGCTGGCAACCAAATGATAATCCGATTAGGGAGAACcgcg > 2:244623/1‑239 (MQ=255) aCGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGGGACGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGGCGGCTGGCGGTGGCACCCAAAAGATATTGCGATTTGGGAACACcgcg > 2:343179/1‑239 (MQ=255) aCGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCCCCAAACCGGAGTTTCAGGTGCGCTGGGGCTGGCCAACCAATTCTATTGCGGTTTggggacaccccg > 2:375869/1‑230 (MQ=255) gcgggCGCGAGGCGGAC‑G‑CG‑AACA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACcgcg < 1:38600/233‑1 (MQ=255) gCTGGGGGGAGGCGGTC‑G‑AAAAAAC‑CCCGCCGTTGCTACATCCGGTGGGGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACcgcg < 1:112170/237‑1 (MQ=255) tgggCGGGGGGGGGTC‑G‑GAAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACcgcg < 1:169983/234‑1 (MQ=255) cTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCCCCAAACCGGAGTTTCAGTGTCGCTGGGGCTGGCAACCAAATAAAATTGCGATTTGGGTAAAcccggga > 2:288436/1‑233 (MQ=255) tGGCGCGAGGGGGTC‑G‑CAAAAAA‑CCCGCCGTTGCTACATCCGGGTGTGCGAACGCAGCCGGGGAGGGGTAA‑ACTGGCG‑CTG‑TTTGTGAAGGAAGGCTTTACTACGCGAATTGTTGATGTGATCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACcgcg < 1:673876/235‑1 (MQ=255) gcgcGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGCATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTTCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGAACCCAAATGATATTGCGATTTTGGAAAACCGCGGGGccc > 2:1017803/1‑239 (MQ=255) gcgcGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGAt > 1:1203118/1‑115 (MQ=255) gcgcGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGCAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGGGTTTCAGGTGGGCTGGCGGCGGGAACCAAATGGTATTGCGAATTGGGATAAACGCGTGAcca > 2:1218870/1‑238 (MQ=255) | GTGACATTTATTGAAACGCCACCCGCAGGGGCGATTCTGGCAGCTAAAGAGTTACCTTCGACCGGCGGTGATACGCTCTGGACCAGCGGTATTGCGGCCTATGAGGCGCTCTCTGTTCCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCAT‑GATTTCCGTAAATCGTTCCCGGAATA‑CAAATACCGCAAAAC‑CGAGGAGGAACATCAACGCTGGCGCGAGGCGGTC‑G‑CGAAAAA‑CCCGCCGTTGCTACATCCGGTGGTGCGAACGCATCCGGTGAGCGGTAA‑ACAGGCG‑CTG‑TTTGTGAATGAAGGCTTTACTACGCGAATTGTTGATGTGAGCGAGAAAG‑AGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACCGCGTGACCC > NC_000913/388098‑388554 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |