BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	540,546	C→T	11.6%	intergenic (+38/‑19)	allB → / → ybbY	allantoinase/putative uracil/xanthine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	540,546	0	C	T	11.6%	264.6 / 4.3	124	intergenic (+38/‑19)	allB/ybbY	allantoinase/putative uracil/xanthine transporter
Reads supporting (aligned to +/- strand): ref base C (37/68); new base T (13/2); total (53/71)
Fisher's exact test for biased strand distribution p-value = 3.48e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 131 total aligned reads displayed.

TTCGTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGA  >  NC_000913/540308‑540779

ttCGTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑tc                                                                                                                                                                                                                                                     <  1:1055972/239‑1 (MQ=255)

  cGTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑tct‑c                                                                                                                                                                                                                                                  <  1:96430/239‑1 (MQ=255)

        cattcaGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTTCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTa                                                                                                                                                                                                                                           <  1:378437/239‑1 (MQ=255)

        cattcaGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCACCAGTAATCTGGCCCCTGCAATGCCCGCCCTTGCGGCGGGC‑AA‑tcctcgggta                                                                                                                                                                                                                                             >  2:579687/1‑231 (MQ=255)

        caatcaGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATAGCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTa                                                                                                                                                                                                                                           <  1:1266443/236‑1 (MQ=255)

               ccGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCTTCCTTTCGGGGGGA‑CT‑TTT‑CC‑CGTTaatggggg                                                                                                                                                                                                                                    >  2:378437/1‑233 (MQ=255)

               ccGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TTT‑CC‑GGTTTAG‑gggtg                                                                                                                                                                                                                                   >  1:40282/1‑239 (MQ=255)

                   aTAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGCAATCTGGCCCCTCCAATGCCCGTCCTTGCGCCGGGC‑AG‑TAT‑CC‑gctgagagggggtttt                                                                                                                                                                                                                                >  2:388235/1‑224 (MQ=255)

                    tAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAACCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑GT‑TCT‑CC‑GGTGAAG‑GTGTGCTTAt                                                                                                                                                                                                                              >  1:823784/1‑239 (MQ=255)

                       cagcTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATAAGCCGTAATCTGGCTCCTGCAATGCCCGTCCTTGCGGCGGG‑‑AC‑TCTCCC‑CGTTAAG‑gtgggggtttttt                                                                                                                                                                                                                           >  2:1009880/1‑229 (MQ=255)

                        agcTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑t‑t                                                                                                                                                                                                                         <  1:1278883/238‑1 (MQ=255)

                           tttGTTTTTTCCAATTACGGTTTGGAATATCGCCCCAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑t‑t                                                                                                                                                                                                                         <  2:278132/233‑1 (MQ=255)

                               ttCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑tct‑c                                                                                                                                                                                                                                                  <  1:168195/210‑1 (MQ=255)

                                   tACCAATGGCGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGt                                                                                                                                                                                                             <  1:579687/239‑1 (MQ=255)

                                    aCCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGTCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TTT‑CC‑CGTTATG‑GGGTGGTTTTG‑T‑TTCATTTTTCa                                                                                                                                                                                                               >  1:997764/1‑236 (MQ=255)

                                         tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCACTTTATCCTTAAACATCAGCAGTATTCTGGCCCCTGCAATGACCGTCCTTGCGGCGGGG‑AT‑TTTCCC‑GGTTATG‑GAGGGTTTTTG‑tctcattttcgcggaagcg                                                                                                                                                                                                         >  2:305822/1‑221 (MQ=255)

                                         tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAACCATCAGAAGTAATCTGGCCCCTCCAATGCCCGTCCTTGCGGCGGGG‑CT‑TGA‑CCAGGTAAAG‑GTGGGtttttttttattttcagaacaacc                                                                                                                                                                                                           >  2:209131/1‑217 (MQ=255)

                                         tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCCGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TTC‑CC‑CGGTAAG‑GGGGGTTTTTG‑T‑TCAATTTTGCGGT‑cgacc                                                                                                                                                                                                       >  1:1317139/1‑234 (MQ=255)

                                         tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TAT‑CC‑GGTTAAT‑GTGGGGTTCTT‑T‑TCCACTTTTCAGtgcgcc                                                                                                                                                                                                        >  1:51650/1‑233 (MQ=255)

                                         tGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGGAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑ATCTCC‑CC‑GGTTAGG‑GGGGGTTTATG‑‑‑TCAAttttttcttaccca                                                                                                                                                                                                        >  2:78156/1‑228 (MQ=255)

                                            cGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTTCGGCGGGC‑AT‑TTT‑CC‑GGTTAAG‑GTGGGGTTATG‑T‑TTAAtttttcgttgaaccgcca                                                                                                                                                                                                    >  1:693047/1‑225 (MQ=255)

                                             gATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTACG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGaa                                                                                                                                                                                                 <  1:960318/239‑1 (MQ=255)

                                               tCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGCAATCTGGCCCCTGCAATGCCCGTCCTTTCGGCGGGG‑AC‑TTT‑CC‑GGGTATG‑GGGGGTTTTTA‑TGTCAAttttcgaaaagccccgaaa                                                                                                                                                                                                   >  2:779106/1‑223 (MQ=255)

                                               acTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑c                                                                                                                                                                                                           <  1:1378120/227‑1 (MQ=255)

                                                cTGGAATTTCCCCACAAACTCACCCCTTTTGTTTGCCGTACCATTGGCGGGCGTAGCACGAAAACCATCTTACGTGGTTATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGACGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑Gc                                                                                                                                                                                             <  2:693047/239‑1 (MQ=255)

                                                cTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAACACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑Gc                                                                                                                                                                                             <  1:199321/239‑1 (MQ=255)

                                                       aaccccACAAAGTCAGCCCGTATGTTGGCCTTTCCATTGGCGCGCGTATCCCGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCTCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTAt                                                                                                                                                                                      <  1:1009880/235‑1 (MQ=255)

                                                         cGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGG‑CT‑TCT‑CC‑CGTTTAA‑GGGTGTTTTTG‑T‑TTAAATTTGCCAT‑CAGACCCCCAAA‑Gccgtttaca                                                                                                                                                                                     >  2:962702/1‑232 (MQ=255)

                                                         cGCCACAAAGTCAGCCCGTATGTTCGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTTAGTGTGGGTTT‑TG‑G‑TCAATTTTGCAGtacgacgggcaagcccgtgttca                                                                                                                                                                                       >  1:73907/1‑217 (MQ=255)

                                                           ccACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TTT‑CC‑CGTTTAG‑GGGTGTTTATG‑T‑TCAATTTTTCGGG‑CAG‑CCGCGGAA‑ACCCGTTTTCC‑gg                                                                                                                                                                                 >  1:372403/1‑239 (MQ=255)

                                                           ccACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGGGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCTAT‑TTC‑CC‑GGTAAAG‑G‑GGGGTTATG‑T‑TCTATTTTGACGT‑CGG‑CCGGGAGA‑AACTGTTAttcga                                                                                                                                                                                  >  1:429436/1‑235 (MQ=255)

                                                                 aGTCACCCCTTTTTTTGGCCGTACCCTTGGCGCGCGTATCACGAAAACCATCTTACGTGGGGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCa                                                                                                                                                                           <  2:478623/239‑1 (MQ=255)

                                                                      gCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑gt                                                                                                                                                                                                                                      <  2:854873/181‑1 (MQ=255)

                                                                      gCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑gt                                                                                                                                                                                                                                      >  1:854873/1‑181 (MQ=255)

                                                                      gCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGGGTTTTTT‑G‑TCAATTTTGCAGTCCAC‑CCGC‑AAA‑GCCCGttgtacggggttcaggggg                                                                                                                                                                       >  1:1233793/1‑222 (MQ=255)

                                                                                 ggCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TCT‑CC‑CGTTAAG‑GTGGGTTTATG‑T‑TCAATTTTTCAGT‑CAG‑CCCCGGAA‑ACCCGTTATAA‑GGCTTTTAGT‑GGTGTTTCtttttt                                                                                                                                                          >  1:729088/1‑239 (MQ=255)

                                                                                     gTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTTTG‑T‑TCAATTTTTCAGT‑CAG‑CCGCGCAA‑ACCCGGTATCA‑GGATTTTTGG‑TGGTTTTCtttttttttt                                                                                                                                                      >  1:997606/1‑239 (MQ=255)

                                                                                      ttccgttgggcggcgTATTCCAAAAACCATCTTACGTGGTTATTTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTg                                                                                                                                                     <  2:1350423/227‑1 (MQ=255)

                                                                                      tccctttgggcggcgTATCACGAAATCCCTCTTACGTGGTGAGGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAAGCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTg                                                                                                                                                     <  2:75173/227‑1 (MQ=255)

                                                                                       tccATTGGGGCACGTATCACGAAAATCAACTTACGTGGTGATTGGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTg                                                                                                                                                     <  1:518518/237‑1 (MQ=255)

                                                                                       aCCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑tct‑c                                                                                                                                                                                                                                                  <  2:325295/154‑1 (MQ=255)

                                                                                           tttgcgcgcGTATTCCGAAAACCCTTTTGCGTGGTTGTGTGGATTACGACATTGAACAGGGGTTCCCTGGTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAACCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAaca                                                                                                                                                <  2:394844/236‑1 (MQ=255)

                                                                                            tgggcggcgTTTCACGAAAACCATCTTACGTGGTGATGTGATTTACGCCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAacac                                                                                                                                               <  2:862854/233‑1 (MQ=255)

                                                                                            tGGCGCCGGTTTCAAGAAAACCATTTTACGGGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAacac                                                                                                                                               <  2:729088/239‑1 (MQ=255)

                                                                                                 cgcgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGGTCAG‑GGGTGTTTATG‑T‑TCCATTTTGCCGT‑CAG‑CCGCGAAA‑GCCTGTTATCG‑AGGTTTTTGT‑GGTTTTTCTTTATTTTTTGCCACAAGGttt                                                                                                                                          >  1:679891/1‑238 (MQ=255)

                                                                                                 cgcgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AA‑TCT‑CC‑CGGTAAG‑GGGGGGTTATG‑G‑TCAAATTTTCAGT‑CAG‑CCCCGAAA‑GCCTGTTTTTA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAAAACGGGtg                                                                                                                                          >  1:950964/1‑239 (MQ=255)

                                                                                                   cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGG‑AT‑TCT‑CC‑GGTTAGA‑GGGGGTTTATG‑T‑TTAATTTTGCAGT‑CAC‑CCCCGCAA‑GCCTTTTTTTC‑GGGTTTCTGTGGGTTTTTTTTTTTTTTTTTCAACAGGGtgtg                                                                                                                                         >  2:406543/1‑236 (MQ=255)

                                                                                                   cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TTC‑CC‑GGGTAAG‑GGGGGGTTTTGTT‑TCATTTTTGC‑GT‑CAG‑CCCCGAAACGCCTTTTTTCG‑GGTTTTAGGG‑GGTTTTTTTTTTTTTTTTGAAAAAGGGTtgg                                                                                                                                         >  2:1156894/1‑238 (MQ=255)

                                                                                                   cgTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTTAG‑GGGGGTTTATG‑T‑TCCATTTTTCCGT‑CAG‑CCGCGCAA‑GACCGTTATCA‑GGGTTTTAGT‑GGTTTTTCTTTTTTTTTTTCTACACCGGtgtg                                                                                                                                        >  1:65955/1‑239 (MQ=255)

                                                                                                      aTCCCGAAAACCCTCTTGCGGGGGGATGTTATTTTCGGCATTTAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAAGCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGtt                                                                                                                                     <  2:1272716/239‑1 (MQ=255)

                                                                                                        cccGAACACCATCTTTCGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTTTTGCGCGGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTtcc                                                                                                                                   <  2:674317/237‑1 (MQ=255)

                                                                                                               cccATTTTTCCTGGTGATGTGATTTACGACATTGAACGGGGCTTCCCTGGTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                            <  2:657563/238‑1 (MQ=255)

                                                                                                               aCCATTTTACGTGGTGATGTGATTTACGGCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                            <  1:220315/239‑1 (MQ=255)

                                                                                                               aCCATCTTACGTGGGGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                            <  1:1029272/239‑1 (MQ=255)

                                                                                                                  aTCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGCAA‑GACTGTTTTCC‑GGGTTTCCTT‑GGTTTTTCTTTATTTTTTGTAAAACGGTTGTGGTTCCTCCCACGcc                                                                                                                          >  1:1261000/1‑237 (MQ=255)

                                                                                                                     ttACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAGACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GGGTGTTTATG‑T‑TCAATTTTTCAGG‑CAG‑CCGCGAAA‑GCCTGTTATTT‑GGATTTCAGG‑GGGTTTTCTTTTTTTTTTTCAACAAGGTTTTGTGTCCTCCTACGGCACtt                                                                                                                      >  2:531921/1‑239 (MQ=255)

                                                                                                                      tcctgggtgggttgttttACGACTTTGAACGGGGCTTCCCTGTTGCGCCCAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACttt                                                                                                                     <  2:1252467/224‑1 (MQ=255)

                                                                                                                           ggtgATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TCT‑CC‑GGTTTAG‑GTGTGGTTTTG‑T‑TCAATTTTTCCGT‑CAG‑CCGCGAAA‑GCCTGTTTTCT‑GGGTTTCAGT‑GGGTTTTTTTTTTTTTTTTCAACCCGGTTTTGTTTTCCCCCCCGCCACTTTCTgtt                                                                                                                >  2:701133/1‑237 (MQ=255)

                                                                                                                            gtgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGGTAAG‑GGGTGTTTTTG‑T‑TCAATTTTGCAGT‑CAG‑CCCCGAAA‑GCCCGTTATCA‑GGATTTACGT‑GGGTTTTCTTTATTTTTTTCAACACGGGTTTGGGTCCTCCTCCCCGACTTTCTGCtt                                                                                                               >  1:1080003/1‑239 (MQ=255)

                                                                                                                               atgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTtcctc                                                                                                                                 <  1:934171/218‑1 (MQ=255)

                                                                                                                                tgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TCT‑CC‑GGTTTAG‑GGGTGGTTATT‑T‑TTAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGGTATCA‑GGATTTCAGT‑GGTTTTTTTTTATTTTTTTCAACACCGGTGTGGTTCCTCCTACCCTACTTttttcttttcc                                                                                                           >  1:32387/1‑238 (MQ=255)

                                                                                                                                       tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑CGTTAAG‑GTGGGTTTTTG‑T‑TCAATTTTTCAGT‑CAG‑CCCCGAAA‑GCCCTTTATCA‑GGGTTTTCGT‑GGGTTTTCTTTTTTTTTTTCAACACGGTTTGTGTTCCTCCTTACCTTCTTTCTTTTTTTCAGTTTcc                                                                                                     >  1:414693/1‑238 (MQ=255)

                                                                                                                                         cGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGt                                                                                                                                      <  1:1364628/203‑1 (MQ=255)

                                                                                                                                            cATTGAACAGGGCTTCCATGTTTCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCa                                                                                                  <  1:1005280/236‑1 (MQ=255)

                                                                                                                                                gAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCGTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc                                                                                           <  1:406543/239‑1 (MQ=255)

                                                                                                                                                gAACAGGGCTTCCCGGTTGGGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTTCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGc                                                                                           <  1:527335/239‑1 (MQ=255)

                                                                                                                                                      ggCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCTCCC‑GGTTAAG‑G‑GTGGTTATT‑T‑TCCATTTTTCCGT‑CAG‑CCGCGAAA‑ACCTGTTATCAGGGATTTC‑GT‑GGGTTTTTTTTTTTTTTTTCACACCGGTTGTGGTTTCCCCTACCCTCCTTTTTTCtttttcgtttgcccaaaagaccctgct                                                                                      >  2:583211/1‑215 (MQ=255)

                                                                                                                                                       tcTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCt                                                                                      <  1:538914/236‑1 (MQ=255)

                                                                                                                                                           cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TTT‑CC‑GGGTTAG‑GGGGGTGTATT‑T‑TTCATTTTGCAGT‑CAG‑CCGCCGAA‑GCCTGGTTTCA‑GGATTTTATG‑GGTTTTTCTTTATTTTTTGCAACACGGGTGGTGTGTCTCCCACGCTCCTTTCTTCTTTTCAGTTTCCGCCAAAGAGCCCCCTTACGc                                                                                 >  2:1197987/1‑238 (MQ=255)

                                                                                                                                                           cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TCT‑CC‑TGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCCGT‑CAG‑CCGCGGAA‑CCCTGTTATAA‑GGGTTTCTTG‑GGTTTTTTTTTTTTTTTTTCAACACGGTTGTGGGTCTCCCTCCGCTACTTTTTTCTTTTTTGTTTTCGCACAGGAGcactcttaccc                                                                                 >  2:495442/1‑228 (MQ=255)

                                                                                                                                                           cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTa                                                                                                                                                                                                                                           <  2:1053747/92‑1 (MQ=255)

                                                                                                                                                           cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTa                                                                                                                                                                                                                                           >  1:1053747/1‑92 (MQ=255)

                                                                                                                                                           cccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GGGGGGTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTTGTATCA‑GGATTTCCGT‑GGGTTTTCTTTTTTTTTTTCAACACGGTTTGGGTTCTCCCTAGCACACTTATTTCTTTTTAGTTTCCGCAAAGTAGcgcgtttaacc                                                                                 >  2:679232/1‑228 (MQ=255)

                                                                                                                                                            ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATTCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc                                                                               <  1:305822/239‑1 (MQ=255)

                                                                                                                                                            ccTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc                                                                               <  1:661808/239‑1 (MQ=255)

                                                                                                                                                            ccTGTGGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTc                                                                               <  1:388235/239‑1 (MQ=255)

                                                                                                                                                             cTGTTGCGCCCAAAGTCTAATGTTTTCTTGAACATCAGCAGTAGTCTGGACCCTGAAATCCCCGTCGCTCCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTACG‑T‑GGAATTTTGCAGT‑CAG‑GCGCGAAA‑GCCTGGTATCA‑GGATTTCCGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTCGCCGCAAAGTAGCCTGCTTACGCTCa                                                                              <  2:1052035/239‑1 (MQ=255)

                                                                                                                                                                ttGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑CT‑TCT‑CC‑GGTTCAG‑GTGTGTTTTTG‑T‑TCAATTTTGCAGG‑CCG‑CCGCGCAA‑GCCCGTTTTCA‑GGTGTTCAGT‑GGTTTTTCTTTTTTTTTTTCAACCCGGTTGTTGTTCCTCCTCACCTCCCTTTTTCTTTTTAGTTGCCCCCAAAGAGTCTCCTTACGCCCACGc                                                                           >  2:1374872/1‑239 (MQ=255)

                                                                                                                                                                              taaTTTATCCTTAAACTTCAGCAGTAATCTGGCCCCTGCAATGCCCGTGCTTGCGGCGGGC‑AT‑TCG‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCt                                                              <  1:836241/237‑1 (MQ=255)

                                                                                                                                                                              cAATTTATCCTTAAACCTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCt                                                              <  1:160095/238‑1 (MQ=255)

                                                                                                                                                                                       cTTAACCCTCAGGAGTAATCTGGCCCCTGGAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCATTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa                                                    <  1:1346637/239‑1 (MQ=255)

                                                                                                                                                                                       cTTAAACCTCAGCAGTAAGCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑TT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATT‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa                                                    <  1:779106/239‑1 (MQ=255)

                                                                                                                                                                                       cTTAAACAGTAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa                                                    <  1:203772/239‑1 (MQ=255)

                                                                                                                                                                                                    attattcgggCCCCTGCAATTCCCGTCTTTCGGGCGGGC‑AT‑TTC‑CC‑GGTTAAG‑GTGGGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCt                                          <  2:1267629/228‑1 (MQ=255)

                                                                                                                                                                                                      tAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCC‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTGCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAata                                                                       <  1:732519/205‑1 (MQ=255)

                                                                                                                                                                                                       aaTTTGGCCCCTGCATTGCCCGTCCTTGCGGCGGGC‑CT‑TCC‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCg                                       <  2:128078/236‑1 (MQ=255)

                                                                                                                                                                                                        agttGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCa                                                    <  1:677710/219‑1 (MQ=255)

                                                                                                                                                                                                         tCTGGCCCCGGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAg                                  <  1:317415/239‑1 (MQ=255)

                                                                                                                                                                                                                  tGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTTTG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTTCCGCAAAGGAGCCTGCTTACGCTCACGCAATATGCTTTTTTTGCTACCGCACCGGCCTGCTTCGCTCAGGCGgttttc                         >  1:826301/1‑237 (MQ=255)

                                                                                                                                                                                                                  tGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TTCATTTTTCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGGTTTCAGT‑GGGTTTTCTTTATTTTTTGCAACACGGGTGTGGTTCCTCCTACGCTCCTTTCTGCTTTTTTGTTTCCGCCAAGAAGCCTGCTTACGCTCACCCCATATGCTTTTTTTTCTACCGCACTGGCCTGCTTctttctcttaaaaaa                          >  2:677710/1‑224 (MQ=255)

                                                                                                                                                                                                                  tGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg                                                                                                                            <  1:241919/140‑1 (MQ=255)

                                                                                                                                                                                                                       tGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CCGGGTTAAG‑G‑GGGGTTATG‑T‑TTCATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGGTATCA‑GGGGTTCAGT‑GGTTTTTTTTTATTTTTTTCCACACGGGTTTGGGTCCTCCTACGCTACTTTCTTCTTTTTAGTTGCCCCACAGTAGCCCGCTTACTCTCCCCCACTAAGCTTTTCTTGTTCCCCCACCGGCCCGCTTCGCTCCGGCGgttttctggc                     >  2:213432/1‑232 (MQ=255)

                                                                                                                                                                                                                            gTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GGGTGGTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCCCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgt                >  1:350094/1‑238 (MQ=255)

                                                                                                                                                                                                                             tCCCTGCGGCGGGC‑AT‑TCT‑CG‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCATCACGGTTGTGGTTCCTCCTACGCTACGTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCAtcgtcg              <  1:150251/239‑1 (MQ=255)

                                                                                                                                                                                                                              ccTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTTTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc             <  1:422194/239‑1 (MQ=255)

                                                                                                                                                                                                                              ccTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCCGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgc             <  1:640780/239‑1 (MQ=255)

                                                                                                                                                                                                                               cttggcgcggGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTTTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg            <  1:1004925/233‑1 (MQ=255)

                                                                                                                                                                                                                               cTTGCGGCGGGC‑CT‑TGT‑CC‑GGTTTAG‑GTGTGTTTATG‑T‑TCAATTGTGCAGT‑CAG‑CCGCGAAA‑GCCTGGTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg            <  1:407384/239‑1 (MQ=255)

                                                                                                                                                                                                                               cTTGCGGCGGGC‑AT‑TTT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg            <  1:213432/239‑1 (MQ=255)

                                                                                                                                                                                                                               cTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTcgcg            <  1:583211/239‑1 (MQ=255)

TTCGTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGC‑AT‑TCT‑CC‑GGTTAAG‑GTGTGTTTATG‑T‑TCAATTTTGCAGT‑CAG‑CCGCGAAA‑GCCTGTTATCA‑GGATTTCAGT‑GGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGA  >  NC_000913/540308‑540779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`