Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,563,177 | T→C | 17.9% | intergenic (+62/‑413) | yffP → / → yffQ | CPZ‑55 prophage, uncharacterized protein/CPZ‑55 prophage, uncharacterized protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,563,177 | 0 | T | C | 17.9% | 154.4 / 4.9 | 73 | intergenic (+62/‑413) | yffP/yffQ | CPZ‑55 prophage, uncharacterized protein/CPZ‑55 prophage, uncharacterized protein |
Reads supporting (aligned to +/- strand): ref base T (6/51); new base C (12/4); total (18/55) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.24e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAAATCAACGCAAACCTGCCGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGT > NC_000913/2562954‑2563415 | cAAATCAACGCAAACCTGCCGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGACGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGCACAACGCGCCCGTAGCCGACGCCAGCGGCAAGACTGGG‑GG‑AC‑ATCTACCCCCCCCC‑A‑CGCCcaaaaaa > 2:749859/1‑237 (MQ=255) caagcAACGCAAACCTGGCGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATcc < 1:724685/235‑1 (MQ=255) atcatggCAAACCTGCCGGTTGGCGGCCTTCCCAACCGTGACACAGGGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCt < 1:930316/233‑1 (MQ=255) accAACGCAAACCTGGCGGTCGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCt < 1:590833/237‑1 (MQ=255) aTCAACGCAAACCTGCCGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCt < 1:749658/239‑1 (MQ=255) cGCAAACCTGCCGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCACCTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCCGCGGCAAGACTGCC‑GG‑TCAATTTCCCCCCCCCT‑C‑CGCGAAAAA‑CCCTcccac > 1:347980/1‑238 (MQ=255) aCCTGCCGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCCAGACTGACGGG‑CC‑ATTTCCCCCCCCCA‑C‑CGCGAAAAAcccccacaccaac > 1:928363/1‑229 (MQ=255) ccGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑CTTTTCCCCCTCCT‑A‑CCCCGAAAAACCCTCCCAACCAcccccca > 1:367849/1‑235 (MQ=255) tCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGCC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑ACCGAAAAAATCCTCCCAACTACCCTG‑CAAAATTTCCacagt > 1:197210/1‑234 (MQ=255) tggcctagagCGAACTGGCAAACTGTTCCAACGCGATTACTTTTCTGAGGATAGCCATGCCAACGAGCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTa‑ca < 1:186536/232‑1 (MQ=255) tGACCCAGGGCGAACTGGCAAACTTTTCCAACGCGAGTACTTTTCTGAGGATAGCCATGGCAACGATCCGAAGTTGGGTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTa‑cac < 2:302577/239‑1 (MQ=255) acacAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTTCCCCCTCCT‑ACCGCTAAAAACCCCGCACACAAACCCTC‑AAAATTTCCCAATTTTcctgcaccg > 1:706541/1‑230 (MQ=255) acacAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATcc < 2:905252/197‑1 (MQ=255) acacAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATcc > 1:905252/1‑197 (MQ=255) acacAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑GC‑CTTTTCCCCCCCCTCC‑CGCG‑AAAACCCCTCCAAACTACCCCGCCACATTTTCC‑CATTTTACCTa‑cacc > 1:990577/1‑237 (MQ=255) agCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGAACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGTC‑GGCAC‑TTTTCCCCCCCCTC‑A‑CCGGAAAAAACCC‑CCCAACTACCCCT‑CCAAATTTCCCGCTTTCACCTA‑CACCCCCCaca > 1:512243/1‑237 (MQ=255) gCGAACTGGCAAACTGTTCCAACGGGATGACTTTTCTGAGGTTAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAATCGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCaa < 1:499181/237‑1 (MQ=255) aCTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCACCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGAC‑GG‑GC‑CTTTACCCCCCCCC‑C‑CCCGACAAATCACCCACACCAACCCCG‑CCAAATTTCACGATTACaaccaaccacaccaaaaaaaa > 2:499181/1‑219 (MQ=255) aCTGGAAAACTGTTCCCACCTGGTGGCTTTTCTGGGGAAACCCATGCCCACGATCCGAAGTTGGTTGGGGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATa < 2:648668/238‑1 (MQ=255) ctggcaagtttgtCCAACGCGATGGCTTTTTTGAGGATAGCCATGCCAGCGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCCCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATaaa < 2:367849/227‑1 (MQ=255) cttttCCAACGCGATGACTTTTCTGAGGATAGCCCTGCCACCGATCCGAATTTGGGTGGTTATGATTACGTCCCCCAGGCCCCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCCGCAAGACTGCC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAgg < 2:858926/236‑1 (MQ=255) ttttccaagggtgtgggttttCGGAGGATAGCCAAGCCAAAGATGCGAAGTTGGTTGGTGAGGGTTACGTCCCCCGGGCACCGGAGAAAATCAACTAAATGTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATGTTCCAGATTTCACGTA‑CAAGCGCCAAAAATAAAGGCCCAGGc < 2:189744/222‑1 (MQ=255) tGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGGCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGc < 1:328737/239‑1 (MQ=255) tGTTCAAAAGCGATGACTTTTCTGAGGAAAGCCATGCCAACGAACCGAAGTTGGTTGGTGATGATTAAGGCCCCCAGGCCCCGGAGCAAATCAACTGAATTTTCGGACAAACGGGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACGGCCCTG‑CAAATTTTCCAGATTTCTCGTA‑CTCGCGCCAAAAATAAAGGCCCAGGc < 2:706541/239‑1 (MQ=255) ctgtCCAACGGGATTACTTGTCTGAGGAAAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTGCGTCCCCCAGGCACCGGAGCAAATCAACTGAAGTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGc < 1:886152/236‑1 (MQ=255) ttCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCCCTCCT‑A‑CCCGAAAAATACCTTCCAACTAACCTG‑CAAATTTTCCAGCTTTCACGGA‑CACCCGCCAAAAATAAAAGCCCAGGCaa > 1:897986/1‑238 (MQ=255) aaccggttGATTTTTCTGAGGATTGCCATGCCAACGATCCGAAGTTGGTTGGTGATGAGTACGCCCCCCAGGCACCGGAGCAAATCAACTGAATTTGCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAg < 2:880646/232‑1 (MQ=255) aCGCGTTGGTTTTTCTGAGGATAGCCATGGCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCCCCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGc < 1:12475/239‑1 (MQ=255) cgATGCCTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGGGATGATTACGTCCCCCAGGCGCCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACGGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAAGCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAAc < 1:572884/239‑1 (MQ=255) gATGTCTTTTTGGGGGATAGCCAGGCCAAAGATCCGAAGTTGGTTGGTGATGATTACGGCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTGCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAAc < 2:60534/238‑1 (MQ=255) gggggaaggCCCTGCCAACGACCCGAAGGTTGTTGGTGATGATTCCGTCCCCCAGGCCCCGGAGCAACTCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCt < 2:387244/231‑1 (MQ=255) ggCCCTGCCCAGGAGCCGAAGGTGGTTGGTGATTATTACGTCCCCCAGGCACCGGAGCAAATCAAATGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTcac < 2:2315/238‑1 (MQ=255) aGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCCCCC‑A‑CCCG‑AAAATACCCCCCAACTAACCTG‑CACATTTTCCCGATTTCACGTACCACCCCCCAAAAA‑AAAAACCCAAGGAGGTAGAAAAC‑CACCCGGGCCCTTTCcaca > 2:342820/1‑239 (MQ=255) ccATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCtt < 1:826934/231‑1 (MQ=255) cAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCg < 1:606955/239‑1 (MQ=255) cccgccccgactttggttgtTTATGATTACGTCCCCCAGGCACCGGAGAAAATAAACTGAATTTTCGGGCAAACCCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGc < 2:1019209/227‑1 (MQ=255) aaCGGTCCGAAGTTGGTTGGGGATGACTACGTCCCCCAGGCCCCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGGAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGc < 2:661723/239‑1 (MQ=255) gATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCCCCT‑C‑CCCGCAAAATACCCCCCAACAACCCTG‑CCAATTTTCCAGATTTCTCCCA‑CAACCGCCCCAAACAAAAACCCCGACAGTTTGAAACC‑CCCCCCGGcccctttcccaaaacccttc > 2:826934/1‑219 (MQ=255) tCCGAAGGTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGa < 1:777695/237‑1 (MQ=255) ccGAAGTTGGTTGGGGATGATTCCGTCCCCCAGGCACCGGAGCAAAGCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACa < 2:166247/238‑1 (MQ=255) gAAGTTGGTTGGGGATGATTACGCCCCCCCGGCACCGGAGCAAAACAACTGAATTTCCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATta < 2:897986/239‑1 (MQ=255) gAAGGTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATta < 1:737764/239‑1 (MQ=255) gttggtGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑AATTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑AACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCCGGCCTTTCTCACAATCCCCCCTGCCATTAT‑ATTAc > 1:105885/1‑238 (MQ=255) gtGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCCCCT‑A‑CCGGAAAAATCCCCCACAACCACCCCG‑CCAATTTTCCAGATTTTCCGTT‑CCACCGCCAAAAAAAAAAGCCCAAGCGATTATCAACCATACCGGGGCCTTTCTCAAAACcccccgcgcaattaaaccaccc > 2:867564/1‑219 (MQ=255) ggatgatTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAACCGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATc < 1:834860/237‑1 (MQ=255) atgatTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑ttt < 1:446246/239‑1 (MQ=255) tgatTCCGCCCCACAGGCCCCGGGGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑ttt < 1:1023737/238‑1 (MQ=255) gttccccAGGCCCCGGAAGAAATCAACCGGAATTTCGGAAAAACGGGCGCGTAGCCGACGGCAGCGGCAAGGCTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTc < 1:51467/236‑1 (MQ=255) gTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCCCCCCC‑A‑CCCCAAAAAACCCCCCCCACTACCCCC‑CCAATTTTCCCGATTTCACGTA‑CACCCGCCAAAAAAAAACGCCCCGGCCGTTAGCAACC‑CAACCCGGCCCTTCTACCAAACCCCCCCGACCTTAT‑AACACCCCcc‑ttttccttttt > 2:70312/1‑238 (MQ=255) ctCCCCCAGGCACCGGAGCAAATCAACGTAATTTTCGAACAAACGCGCGCGGAGCCGAAGTCAGCGGCAAGCCTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTc < 2:512243/238‑1 (MQ=255) ccccAGGCCCCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTc < 1:892011/236‑1 (MQ=255) ccccAGGCACCGGAGCAAATCAACGGAATTTTCGGACAAACGCGCGCGTAGCCGACGGCAGCGGCAAGACTGGC‑GG‑TC‑ATTGCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAAGCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAgg < 1:873334/239‑1 (MQ=255) cGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑CTTTTCCCGCCCCC‑A‑CGCGCAAAATCCCTCACAACTACCCCT‑CAAATTTTCCAGCTTTCACGGA‑CACCCCCCAAACATAAACGCCCCAGCAGTTTGCAACC‑TACCCCGGCCTTTTCCCCCAACCCCCCCGCCACTAT‑AAAACCCACCTTTTCCGTTTTcgtaggggaagag > 2:467223/1‑227 (MQ=255) cGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCCCCT‑A‑CGCGAAAAAACCCTCACAACCAACCTG‑CCAAATTTCCAGATTTTACGGA‑CAAGCCCCAAAAATAAAAACACAGGCAGTTAGCAAAC‑TACCCCGGGCTTTCTCCCAAAACCCCCCGCCATTATAATACCCCCCC‑TTCCCGTTTTCA‑GTGGGGGAccc > 2:892011/1‑237 (MQ=255) aaTCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCG‑AAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGgccgc < 1:342820/239‑1 (MQ=255) aTCAACTGAATTTTCGGACAAACCCGCGCGGTGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAGTAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGgccgc < 1:467223/239‑1 (MQ=255) cattgtaTTTTCGGACAAACGCCCGTGTAGCCGACGTAAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCCA‑CAAATTTTCCAGATTTCACGGA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGa < 2:523866/233‑1 (MQ=255) aaacgAATTTGCGGACAACCGCGCGTCTAGGCGAAGCCACCGGCAAGGCCGGC‑TG‑GC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAAGTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGa < 2:834625/235‑1 (MQ=255) aaCTGAATTTTCGGACAACCCCGCGCGGAGCCGACGTCAACGGCAAGACTTGC‑CG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTTCCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGa < 1:349009/239‑1 (MQ=255) ttccGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTGCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGcac < 1:145655/236‑1 (MQ=255) cggaacaaccccggcgTACCCGGCGTCAGCCGCAAAACTGGC‑CG‑TC‑TTTTCCCCGCCCCT‑A‑CGCGAAAAATCCCGCACAACTACCCTG‑CAAATTTTCCAGATTTCCCGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAAt < 2:870042/226‑1 (MQ=255) ccccccgcgcgtgggccgcctCAGCGGCAAGGCTGGC‑GG‑TC‑ATTTCCCCCCTCCT‑A‑CGGGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGAtt < 2:808451/219‑1 (MQ=255) aaccccccgcgTTGCCGACGTCAGCCGCAAGACTGGC‑GG‑TC‑AATTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGAtt < 2:105885/232‑1 (MQ=255) aaaCGCGCGCGTAGCCGACGTTCGCGGCAAGCCTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAAGCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGAtt < 1:804200/239‑1 (MQ=255) aaaCCCGCGCTTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGAtt < 1:422892/239‑1 (MQ=255) gTAGCCGACGTCAGCGGCAAGGCTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGa < 1:1034474/238‑1 (MQ=255) gccgaatgctgCGGGAAGTCTGGC‑GG‑TT‑CTTTCCCCCCTCCT‑G‑CGCCAAAAATCCCCCACCACTTCCCTG‑CAAATTTTCCAGATTTCCCGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TCCCCGGGCCTTGCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACa < 2:347980/228‑1 (MQ=255) cGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACAtt < 1:623949/238‑1 (MQ=255) gTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TCCCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAAt < 1:70312/239‑1 (MQ=255) tGGG‑GG‑TC‑ATTTCCCCGCCTCT‑A‑CGGCAAAAACCCCCTACAACACCCCCG‑CAAATGTGCCAGATTTCACGTA‑CCCGCGCCAAAAATAAAGGCCCAGGCATTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAAGTGATTAATTTCTGAACATTCAAATCAACTCCCACCaaa < 2:818806/239‑1 (MQ=255) gg‑TT‑ATTTCCCCCCCCCT‑A‑CGCGAAAAATCCCCAACAACCCCCCCG‑CAAATTTTCCAGATTTCACGTA‑CACGCCCCAAAAATAAAGGCCCAGGCAGTTACCAACC‑TCCCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGcc < 2:587830/238‑1 (MQ=255) cgataTTTCCCCCGTCCT‑A‑CGCGAAAAAACCCTCACAACTACCCGG‑AAAATTTGCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGcc < 1:494157/234‑1 (MQ=255) ccccGCCCCC‑A‑CGCGAAAAACCCCTCACAACGACCCTT‑CAAATGGGCCAGATTTCACGGA‑CACGCGCCAAAAAGAAAGGCCCAGGCAGGGAGCAACC‑TACCCGGGCCTTTCGCACAAGCCCCGCTGACAGGAG‑ATCACCCAGC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACAtt < 2:763327/208‑1 (MQ=255) tCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGACAAAAATAAAGGCCCAGGCAGTTAGCAAAG‑AAAACGGGCCTAGAAAAAAATCCCCGAGGAGATTAT‑ATCACCAACC‑TTTACGTCCGCAGGTGGGAGCAAGTAGGCCGCCGACGAGGAACAATTGTAAAAAGCTTGAACTCGAAAAGCACCTCCACCCAAAGCCACCAAGAAGGGAggg > 2:248204/1‑238 (MQ=255) | CAAATCAACGCAAACCTGCCGGTTGGCGGCCTTCCCAACGTTGACACAGAGCGAACTGGCAAACTGTTCCAACGCGATGACTTTTCTGAGGATAGCCATGCCAACGATCCGAAGTTGGTTGGTGATGATTACGTCCCCCAGGCACCGGAGCAAATCAACTGAATTTTCGGACAAACGCGCGCGTAGCCGACGTCAGCGGCAAGACTGGC‑GG‑TC‑ATTTCCCCGCTCCT‑A‑CGCGAAAAATCCCTCACAACTACCCTG‑CAAATTTTCCAGATTTCACGTA‑CACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACC‑TACCCGGGCCTTTCTCACAATCCCCGCTGACATTAT‑ATCACCCATC‑TTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGT > NC_000913/2562954‑2563415 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |